mRNA_M-pyrifera_M_contig80492.18852.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: L8H8M4_ACACA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8M4_ACACA) HSP 1 Score: 153 bits (386), Expect = 6.770e-42 Identity = 76/166 (45.78%), Postives = 107/166 (64.46%), Query Frame = 1 Query: 4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 501 V+SRDL+WEP GQ LF DPPR DI I +LRPGQ I+++ R K G +HAK+SPV+TA Y++ P + V+ +G+E ++LV +CPM VF+IE+SGKA V ++ CTMCREC+RE W + L F F++E+ PP+VL + A+ + AK Sbjct: 175 VYSRDLIWEPVGGQAELFADDPPRPVHDDILIAKLRPGQEIEVECRCAKGEGKEHAKWSPVSTAYYRLLPDIKFVKDFKGQE---AKKLVAKCPMNVFDIEDSGKAYVKNQRNCTMCRECIREDGWDKRIKLLRVKDHFIFSIESTG-ILPPNVLFEEAVKVFMAK 336
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A5A8E2J9_CAFRO (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2J9_CAFRO) HSP 1 Score: 145 bits (365), Expect = 3.790e-38 Identity = 86/182 (47.25%), Postives = 108/182 (59.34%), Query Frame = 1 Query: 4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG-----KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAKSRLLQKQVRAA 534 V+SRD+ W PQ GQE F P GDI + +L PGQ I L+A AVK GADHAKFSPVATA+Y++AP V L EG ++ LV CPMGVF+IE+ G +AVVA CTMCREC+R W V L + F F VE+ A P LV+ AL + A K+R ++ + AA Sbjct: 155 VYSRDITWGPQGGQEERFADRPVEPVEGDIVLAKLLPGQTICLEAHAVKGTGADHAKFSPVATASYRLAPEVELP--GEGFVGDDARSLVATCPMGVFDIEDVGSSTGPRAVVAQPRACTMCRECLRPAGWAQRVRLRKVNDHFLFRVESTG-ALPAATLVEMALEIFAEKARNAKEALEAA 333
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT) HSP 1 Score: 138 bits (347), Expect = 3.200e-36 Identity = 79/170 (46.47%), Postives = 108/170 (63.53%), Query Frame = 1 Query: 1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 501 +V+SRDL W PQ QE FGS P E DI + +LRPGQ+I L+A K G DHAKFSPVATA+Y++ P+V L+E+ EG + + LV+ C +G+F+IE+ G AVV + CTMCR C+REP+W + L F F+VE+V P +L++ AL +LA K Sbjct: 147 SVYSRDLEWVPQGNQEERFGSIRPVHE--DILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTD---AKRLVEECQIGLFDIEDIGGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLE-ALNVLAEK 310
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: UPI000644A843 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A843) HSP 1 Score: 138 bits (347), Expect = 5.220e-36 Identity = 75/178 (42.13%), Postives = 109/178 (61.24%), Query Frame = 1 Query: 1 TVWSRDLVWEPQEGQEALFGSDP-PRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAKSRLLQKQVRA 531 TV+S+DL W P E Q+ +F D PR DIPI +LRPGQA+++Q K+ G +H K+SPV TA+YK+ P +T+ + GE+ E+L CPM VF+IE+SG+A A CTMCREC+R+P +P V L F F++E+V P L K+A+ +L K ++ +R+ Sbjct: 188 TVYSKDLKWVPTEDQQEIFDEDDKPRPAVDDIPIVKLRPGQALEVQCYCEKNIGREHIKWSPVGTASYKIMPLITVSPKVTGEK---AEKLKNSCPMKVFDIEDSGQAFAARPLNCTMCRECIRDPEMEPLVKLERIRDHFIFSIESVGTLEPKS-LFKQAIQILIDKCVTVENSLRS 361
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A2ER03_TRIVA (RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2ER03_TRIVA) HSP 1 Score: 137 bits (344), Expect = 9.250e-36 Identity = 73/163 (44.79%), Postives = 103/163 (63.19%), Query Frame = 1 Query: 4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLL 492 + S LVW P EGQ FG+ P DIPIT++ PGQ I L RA+K G+DHAKF PV TA Y++ P + + + E+++ ++L+ +CPMGVF+IE+S K VV +CT CREC+R P+ +V+L + + FTVE+V P +VLVK AL +L Sbjct: 167 ILSSHLVWMPYEGQREKFGNVAPL--HADIPITKILPGQTIHLYCRAIKGIGSDHAKFQPVCTAFYRLVPSIQVKDEINSSEKKQ-QKLISKCPMGVFDIEDS-KLVVRSPRKCTTCRECIRNPSLAHYVSLGKEANHYEFTVESVG-VRPAYVLVKEALQIL 324
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A7S4PFF0_9EUKA (Hypothetical protein n=2 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PFF0_9EUKA) HSP 1 Score: 137 bits (344), Expect = 1.500e-35 Identity = 76/176 (43.18%), Postives = 106/176 (60.23%), Query Frame = 1 Query: 4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGK----AVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAKSRLLQK 519 ++S DLVW P QE F S P ++ DI + L PGQ I L ARA K G DH KFSPV TA Y++ P ++L E+E EELV++CPM VF+IE+ GK AVV+ CT+CREC+REP WQP + ++ + + F FT+E+ A P ++ AL + K +++K Sbjct: 189 IYSGDLVWHPLGSQEEDFESTPIKMVHDDILLAILGPGQEIHLTARAEKGVGEDHVKFSPVCTAFYRILPEISL---NVDIEDELAEELVEKCPMRVFDIEDLGKTKKKAVVSRPRNCTVCRECIREPEWQPRIDISRNKQHFIFTIESTG-ALAPELIFHMALKVFLEKLEVIKK 360
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA) HSP 1 Score: 136 bits (343), Expect = 1.530e-35 Identity = 76/167 (45.51%), Postives = 101/167 (60.48%), Query Frame = 1 Query: 1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLL 492 +V+SRDL W PQ QE FG+ P E DI I +LRPGQ+I L+A K G DHAKFSPVATA+Y++ P V L E EG++ + LV+ C MG+F+IE+ G AVV + CTMCR C+REP W + L F F+VE+V P +L + +L+ Sbjct: 156 SVYSRDLEWVPQGNQEERFGAIRPVHE--DILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDD---AKRLVEECQMGLFDIEDMGGVPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMIKPEELLPEALNVLM 317
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: M4C0R7_HYAAE (RPOLD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0R7_HYAAE) HSP 1 Score: 134 bits (336), Expect = 2.530e-35 Identity = 75/159 (47.17%), Postives = 95/159 (59.75%), Query Frame = 1 Query: 1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVL 468 +V+SRDL W PQ QE FG P E DI I +LRPGQ+I L+A K G DHAKFSPVATA+Y++ P+V L+E+ EG + LV C GVF+IE+ G AVV E CTMCR C+REP W + L F F++E+V P +L Sbjct: 78 SVYSRDLEWVPQGNQEERFGLIRPVSE--DILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGVN---AKRLVDECRTGVFDIEDIGGVPTAVVKDERSCTMCRNCIREPGWNERIRLGRQSDHFIFSIESVGMIKPEELL 231
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM) HSP 1 Score: 133 bits (334), Expect = 5.410e-34 Identity = 79/170 (46.47%), Postives = 103/170 (60.59%), Query Frame = 1 Query: 1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 501 +V+SRDL W PQ QE FGS P E DI I +LRPGQ+I L+A K G DHAKFSPVATA+Y++ P+V E+ EG + + LV+ C MG+F+IE+ G AVV + CTMCR C+REP W + L F F+VE+V +L + AL +LA K Sbjct: 184 SVYSRDLEWVPQGNQEERFGSIRPVHE--DILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGAD---AKHLVEDCQMGLFDIEDIGGVPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMMKAEELLPE-ALGVLAEK 347
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A7S2ZMZ7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMZ7_9RHOD) HSP 1 Score: 133 bits (334), Expect = 5.510e-34 Identity = 77/166 (46.39%), Postives = 99/166 (59.64%), Query Frame = 1 Query: 4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 501 V+S L W P Q +FGS PP+ DI I +LRPGQ I L+ AVK DHAK+SPVATA Y+M P++ L++ EG + +EL + CP F+IEESGKAVV+ S CTMCREC+R W V L+ F F++E+ A P L RAL +L K Sbjct: 178 VFSSMLEWVPIGEQAEVFGSKPPKPVNDDILIAKLRPGQEIDLEVLAVKGISKDHAKWSPVATAFYRMLPQIELLQSIEGAD---AKELKEMCPSNCFDIEESGKAVVSRPSTCTMCRECIRHGDWGEKVRLSRVRDHFIFSIESTG-AIAPEDLFMRALQVLVDK 339 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig80492.18852.1 >prot_M-pyrifera_M_contig80492.18852.1 ID=prot_M-pyrifera_M_contig80492.18852.1|Name=mRNA_M-pyrifera_M_contig80492.18852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKback to top mRNA from alignment at M-pyrifera_M_contig80492:277..906- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig80492.18852.1 ID=mRNA_M-pyrifera_M_contig80492.18852.1|Name=mRNA_M-pyrifera_M_contig80492.18852.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig80492:277..906- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig80492:277..906- >mRNA_M-pyrifera_M_contig80492.18852.1 ID=mRNA_M-pyrifera_M_contig80492.18852.1|Name=mRNA_M-pyrifera_M_contig80492.18852.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig80492:277..906- (Macrocystis pyrifera P11B4 male)back to top |