mRNA_M-pyrifera_M_contig80492.18852.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80492.18852.1
Unique NamemRNA_M-pyrifera_M_contig80492.18852.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: L8H8M4_ACACA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8M4_ACACA)

HSP 1 Score: 153 bits (386), Expect = 6.770e-42
Identity = 76/166 (45.78%), Postives = 107/166 (64.46%), Query Frame = 1
Query:    4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 501
            V+SRDL+WEP  GQ  LF  DPPR    DI I +LRPGQ I+++ R  K  G +HAK+SPV+TA Y++ P +  V+  +G+E    ++LV +CPM VF+IE+SGKA V ++  CTMCREC+RE  W   + L      F F++E+     PP+VL + A+ +  AK
Sbjct:  175 VYSRDLIWEPVGGQAELFADDPPRPVHDDILIAKLRPGQEIEVECRCAKGEGKEHAKWSPVSTAYYRLLPDIKFVKDFKGQE---AKKLVAKCPMNVFDIEDSGKAYVKNQRNCTMCRECIREDGWDKRIKLLRVKDHFIFSIESTG-ILPPNVLFEEAVKVFMAK 336          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A5A8E2J9_CAFRO (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2J9_CAFRO)

HSP 1 Score: 145 bits (365), Expect = 3.790e-38
Identity = 86/182 (47.25%), Postives = 108/182 (59.34%), Query Frame = 1
Query:    4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG-----KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAKSRLLQKQVRAA 534
            V+SRD+ W PQ GQE  F   P     GDI + +L PGQ I L+A AVK  GADHAKFSPVATA+Y++AP V L    EG   ++   LV  CPMGVF+IE+ G     +AVVA    CTMCREC+R   W   V L   +  F F VE+   A P   LV+ AL + A K+R  ++ + AA
Sbjct:  155 VYSRDITWGPQGGQEERFADRPVEPVEGDIVLAKLLPGQTICLEAHAVKGTGADHAKFSPVATASYRLAPEVELP--GEGFVGDDARSLVATCPMGVFDIEDVGSSTGPRAVVAQPRACTMCRECLRPAGWAQRVRLRKVNDHFLFRVESTG-ALPAATLVEMALEIFAEKARNAKEALEAA 333          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT)

HSP 1 Score: 138 bits (347), Expect = 3.200e-36
Identity = 79/170 (46.47%), Postives = 108/170 (63.53%), Query Frame = 1
Query:    1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 501
            +V+SRDL W PQ  QE  FGS  P  E  DI + +LRPGQ+I L+A   K  G DHAKFSPVATA+Y++ P+V L+E+ EG +    + LV+ C +G+F+IE+ G    AVV  +  CTMCR C+REP+W   + L      F F+VE+V    P  +L++ AL +LA K
Sbjct:  147 SVYSRDLEWVPQGNQEERFGSIRPVHE--DILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTD---AKRLVEECQIGLFDIEDIGGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLE-ALNVLAEK 310          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: UPI000644A843 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A843)

HSP 1 Score: 138 bits (347), Expect = 5.220e-36
Identity = 75/178 (42.13%), Postives = 109/178 (61.24%), Query Frame = 1
Query:    1 TVWSRDLVWEPQEGQEALFGSDP-PRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAKSRLLQKQVRA 531
            TV+S+DL W P E Q+ +F  D  PR    DIPI +LRPGQA+++Q    K+ G +H K+SPV TA+YK+ P +T+  +  GE+    E+L   CPM VF+IE+SG+A  A    CTMCREC+R+P  +P V L      F F++E+V    P   L K+A+ +L  K   ++  +R+
Sbjct:  188 TVYSKDLKWVPTEDQQEIFDEDDKPRPAVDDIPIVKLRPGQALEVQCYCEKNIGREHIKWSPVGTASYKIMPLITVSPKVTGEK---AEKLKNSCPMKVFDIEDSGQAFAARPLNCTMCRECIRDPEMEPLVKLERIRDHFIFSIESVGTLEPKS-LFKQAIQILIDKCVTVENSLRS 361          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A2ER03_TRIVA (RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2ER03_TRIVA)

HSP 1 Score: 137 bits (344), Expect = 9.250e-36
Identity = 73/163 (44.79%), Postives = 103/163 (63.19%), Query Frame = 1
Query:    4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLL 492
            + S  LVW P EGQ   FG+  P     DIPIT++ PGQ I L  RA+K  G+DHAKF PV TA Y++ P + + +     E+++ ++L+ +CPMGVF+IE+S K VV    +CT CREC+R P+   +V+L  +   + FTVE+V    P +VLVK AL +L
Sbjct:  167 ILSSHLVWMPYEGQREKFGNVAPL--HADIPITKILPGQTIHLYCRAIKGIGSDHAKFQPVCTAFYRLVPSIQVKDEINSSEKKQ-QKLISKCPMGVFDIEDS-KLVVRSPRKCTTCRECIRNPSLAHYVSLGKEANHYEFTVESVG-VRPAYVLVKEALQIL 324          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A7S4PFF0_9EUKA (Hypothetical protein n=2 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PFF0_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 1.500e-35
Identity = 76/176 (43.18%), Postives = 106/176 (60.23%), Query Frame = 1
Query:    4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGK----AVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAKSRLLQK 519
            ++S DLVW P   QE  F S P ++   DI +  L PGQ I L ARA K  G DH KFSPV TA Y++ P ++L       E+E  EELV++CPM VF+IE+ GK    AVV+    CT+CREC+REP WQP + ++ + + F FT+E+   A  P ++   AL +   K  +++K
Sbjct:  189 IYSGDLVWHPLGSQEEDFESTPIKMVHDDILLAILGPGQEIHLTARAEKGVGEDHVKFSPVCTAFYRILPEISL---NVDIEDELAEELVEKCPMRVFDIEDLGKTKKKAVVSRPRNCTVCRECIREPEWQPRIDISRNKQHFIFTIESTG-ALAPELIFHMALKVFLEKLEVIKK 360          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.530e-35
Identity = 76/167 (45.51%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLL 492
            +V+SRDL W PQ  QE  FG+  P  E  DI I +LRPGQ+I L+A   K  G DHAKFSPVATA+Y++ P V L E  EG++    + LV+ C MG+F+IE+ G    AVV  +  CTMCR C+REP W   + L      F F+VE+V    P  +L +   +L+
Sbjct:  156 SVYSRDLEWVPQGNQEERFGAIRPVHE--DILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDD---AKRLVEECQMGLFDIEDMGGVPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMIKPEELLPEALNVLM 317          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: M4C0R7_HYAAE (RPOLD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0R7_HYAAE)

HSP 1 Score: 134 bits (336), Expect = 2.530e-35
Identity = 75/159 (47.17%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVL 468
            +V+SRDL W PQ  QE  FG   P  E  DI I +LRPGQ+I L+A   K  G DHAKFSPVATA+Y++ P+V L+E+ EG      + LV  C  GVF+IE+ G    AVV  E  CTMCR C+REP W   + L      F F++E+V    P  +L
Sbjct:   78 SVYSRDLEWVPQGNQEERFGLIRPVSE--DILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGVN---AKRLVDECRTGVFDIEDIGGVPTAVVKDERSCTMCRNCIREPGWNERIRLGRQSDHFIFSIESVGMIKPEELL 231          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 133 bits (334), Expect = 5.410e-34
Identity = 79/170 (46.47%), Postives = 103/170 (60.59%), Query Frame = 1
Query:    1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 501
            +V+SRDL W PQ  QE  FGS  P  E  DI I +LRPGQ+I L+A   K  G DHAKFSPVATA+Y++ P+V   E+ EG +    + LV+ C MG+F+IE+ G    AVV  +  CTMCR C+REP W   + L      F F+VE+V       +L + AL +LA K
Sbjct:  184 SVYSRDLEWVPQGNQEERFGSIRPVHE--DILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGAD---AKHLVEDCQMGLFDIEDIGGVPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMMKAEELLPE-ALGVLAEK 347          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A7S2ZMZ7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMZ7_9RHOD)

HSP 1 Score: 133 bits (334), Expect = 5.510e-34
Identity = 77/166 (46.39%), Postives = 99/166 (59.64%), Query Frame = 1
Query:    4 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 501
            V+S  L W P   Q  +FGS PP+    DI I +LRPGQ I L+  AVK    DHAK+SPVATA Y+M P++ L++  EG +    +EL + CP   F+IEESGKAVV+  S CTMCREC+R   W   V L+     F F++E+   A  P  L  RAL +L  K
Sbjct:  178 VFSSMLEWVPIGEQAEVFGSKPPKPVNDDILIAKLRPGQEIDLEVLAVKGISKDHAKWSPVATAFYRMLPQIELLQSIEGAD---AKELKEMCPSNCFDIEESGKAVVSRPSTCTMCRECIRHGDWGEKVRLSRVRDHFIFSIESTG-AIAPEDLFMRALQVLVDK 339          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H8M4_ACACA6.770e-4245.78DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A5A8E2J9_CAFRO3.790e-3847.25DNA-directed RNA polymerases I and III subunit RPA... [more]
D0NVB2_PHYIT3.200e-3646.47DNA-directed RNA polymerases I and III subunit RPA... [more]
UPI000644A8435.220e-3642.13hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A2ER03_TRIVA9.250e-3644.79RNA polymerase Rpb3/Rpb11 dimerisation domain cont... [more]
A0A7S4PFF0_9EUKA1.500e-3543.18Hypothetical protein n=2 Tax=Paramoeba aestuarina ... [more]
A0A662X4Y9_9STRA1.530e-3545.51DNA-directed RNA polymerases I and III subunit RPA... [more]
M4C0R7_HYAAE2.530e-3547.17RPOLD domain-containing protein n=1 Tax=Hyaloperon... [more]
H3GV90_PHYRM5.410e-3446.47DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A7S2ZMZ7_9RHOD5.510e-3446.39Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80492contigM-pyrifera_M_contig80492:277..906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue3.5e-31
Seed eggNOG ortholog4792.ETI55259
Preferred namePOLR1C
KEGG rclassRC00055,RC00523,RC02795
KEGG koko:K03027,ko:K08059,ko:K13196,ko:K14163,ko:K18715
KEGG TC1.I.1
KEGG ReactionR00435,R00441,R00442,R00443,R03661,R05578
KEGG Pathwayko00230,ko00240,ko00860,ko00970,ko01100,ko01110,ko01120,ko03020,ko04612,ko04623,ko05169,map00230,map00240,map00860,map00970,map01100,map01110,map01120,map03020,map04612,map04623,map05169
KEGG ModuleM00121,M00181,M00182,M00359
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015074,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070893,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.RNA polymerases D
EggNOG OGs3Q78X@4776,COG0202@1,KOG1521@2759
Ec32 ortholog descriptionDNA-directed RNA polymerase, insert domain
Ec32 orthologEc-14_004750.1
EC6.1.1.15,6.1.1.17
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03021,ko03041
Exons2
Model size576
Cds size576
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.5931237-CDS-M-pyrifera_M_contig80492:276..5901622816710.5931237-CDS-M-pyrifera_M_contig80492:276..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80492 277..590 -
1692278134.1306798-CDS-M-pyrifera_M_contig80492:276..5901692278134.1306798-CDS-M-pyrifera_M_contig80492:276..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80492 277..590 -
1622816710.6051323-CDS-M-pyrifera_M_contig80492:644..9061622816710.6051323-CDS-M-pyrifera_M_contig80492:644..906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80492 645..906 -
1692278134.1434636-CDS-M-pyrifera_M_contig80492:644..9061692278134.1434636-CDS-M-pyrifera_M_contig80492:644..906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80492 645..906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80492.18852.1prot_M-pyrifera_M_contig80492.18852.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80492 277..906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80492.18852.1

>prot_M-pyrifera_M_contig80492.18852.1 ID=prot_M-pyrifera_M_contig80492.18852.1|Name=mRNA_M-pyrifera_M_contig80492.18852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVK
SNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFE
IEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEA
TPPHVLVKRALLLLAAKSRLLQKQVRAARSDRGEGGEEEGE*
back to top

mRNA from alignment at M-pyrifera_M_contig80492:277..906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80492.18852.1 ID=mRNA_M-pyrifera_M_contig80492.18852.1|Name=mRNA_M-pyrifera_M_contig80492.18852.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig80492:277..906- (Macrocystis pyrifera P11B4 male)
ACGGTGTGGTCGAGGGACCTGGTGTGGGAGCCGCAGGAGGGGCAGGAGGC GCTGTTTGGAAGCGATCCGCCTCGAGTGGAATTTGGAGATATACCCATCA CCAGACTAAGACCAGGCCAAGCCATCAAGCTGCAAGCGCGTGCTGTGAAG AGCAACGGAGCAGACCACGCCAAATTCTCCCCAGTAGCCACTGCCGCCTA CAAGATGGCCCCACGTGTGACTCTGGTGGAACGGAAGGAAGGGGAGGAGG AGGAAGAAGGGGGTGGTGAGGGTGGTGGTGAGGGTGGTGGTGGGTTTTGG GGTGGGGAGAGGGGAGAGGAGTTGGTGAAGCGGTGTCCTATGGGGGTGTT TGAGATCGAAGAGAGCGGCAAGGCGGTGGTGGCGCACGAGAGCCGGTGCA CCATGTGCAGGGAGTGCGTCAGAGAGCCAGCGTGGCAGCCGCACGTCGCG CTGGCTCTCGACCACCGCACCTTCCACTTCACCGTGGAAGCCGTGTCGGA AGCCACCCCGCCCCACGTCCTCGTCAAGAGAGCCCTGCTGCTCCTCGCAG CCAAATCCAGACTCCTCCAGAAACAGGTGCGCGCCGCAAGAAGCGACAGA GGCGAAGGGGGGGAAGAGGAGGGGGAATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80492:277..906-

>mRNA_M-pyrifera_M_contig80492.18852.1 ID=mRNA_M-pyrifera_M_contig80492.18852.1|Name=mRNA_M-pyrifera_M_contig80492.18852.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig80492:277..906- (Macrocystis pyrifera P11B4 male)
ACGGTGTGGTCGAGGGACCTGGTGTGGGAGCCGCAGGAGGGGCAGGAGGC
GCTGTTTGGAAGCGATCCGCCTCGAGTGGAATTTGGAGATATACCCATCA
CCAGACTAAGACCAGGCCAAGCCATCAAGCTGCAAGCGCGTGCTGTGAAG
AGCAACGGAGCAGACCACGCCAAATTCTCCCCAGTAGCCACTGCCGCCTA
CAAGATGGCCCCACGTGTGACTCTGGTGGAACGGAAGGAAGGGGAGGAGG
AGGAAGAAGGGGACGGTGTGGTCGAGGGACCTGGTGTGGGAGCCGCAGGA
GGGGCAGGAGGCGCTGTTTGGAAGCGATCCGCCTCGAGTGGAATTTGGAG
ATATACCCATCACCAGACTAAGACCAGGCCAAGCCATCAAGCTGCAAGCG
CGTGCTGTGAAGAGCAACGGAGCAGACCACGCCAAATTCTCCCCAGTAGC
CACTGCCGCCTACAAGATGGCCCCACGTGTGACTCTGGTGGAACGGAAGG
AAGGGGAGGAGGAGGAAGAAGGGGAGGAGTTGGTGAAGCGGTGTCCTATG
GGGGTGTTTGAGATCGAAGAGAGCGGCAAGGCGGTGGTGGCGCACGAGAG
CCGGTGCACCATGTGCAGGGAGTGCGTCAGAGAGCCAGCGTGGCAGCCGC
ACGTCGCGCTGGCTCTCGACCACCGCACCTTCCACTTCACCGTGGAAGCC
GTGTCGGAAGCCACCCCGCCCCACGTCCTCGTCAAGAGAGCCCTGCTGCT
CCTCGCAGCCAAATCCAGACTCCTCCAGAAACAGGTGCGCGCCGCAAGAA
GCGACAGAGGCGAAGGGGGGGAAGAGGAGGGGGAATAGAGGAGTTGGTGA
AGCGGTGTCCTATGGGGGTGTTTGAGATCGAAGAGAGCGGCAAGGCGGTG
GTGGCGCACGAGAGCCGGTGCACCATGTGCAGGGAGTGCGTCAGAGAGCC
AGCGTGGCAGCCGCACGTCGCGCTGGCTCTCGACCACCGCACCTTCCACT
TCACCGTGGAAGCCGTGTCGGAAGCCACCCCGCCCCACGTCCTCGTCAAG
AGAGCCCTGCTGCTCCTCGCAGCCAAATCCAGACTCCTCCAGAAACAGGT
GCGCGCCGCAAGAAGCGACAGAGGCGAAGGGGGGGAAGAGGAGGGGGAAT
AG
back to top