mRNA_M-pyrifera_M_contig80477.18846.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80477.18846.1
Unique NamemRNA_M-pyrifera_M_contig80477.18846.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: A0A3D1GCV2_9BACT (Exodeoxyribonuclease V subunit alpha (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GCV2_9BACT)

HSP 1 Score: 285 bits (728), Expect = 4.470e-89
Identity = 156/317 (49.21%), Postives = 207/317 (65.30%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKIIEALYLRDKRTSFALATPTGKAAQRLNESLSVEELKFSINPATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNSTNEFSKSLFSGFSSNKDSKNKVTPINDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPF--LVDKKNGFTFKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            AVLLS IK  +I+SGGPGTGKT T+++II      D      LA PTGKAAQR+NESL           A T+H LL + GTS NF +NE N L +++VI+DEASM+D+ +W+ LIRALS +TRLILLGD+ QL SVEAGSIL DIC +S N FS ++       +   +  + +NDCII LTKS+RF   SGI   S+ I  G S  V  +L SD+YP++T   P NE ++S+I+ +   PF   V  K    F  +  YQIL ALRKG  GVE+LN++ E  +KK +  + + EWYEGRP++ITRN+ +L+V+NG
Sbjct:  109 AVLLSQIKPFMILSGGPGTGKTHTVKQIIRTSLKNDPEMKIGLAAPTGKAAQRMNESLGDTNTGIK---AVTLHSLLGARGTSYNFSFNESNPLSYELVIVDEASMMDLPMWVHLIRALSGSTRLILLGDQYQLESVEAGSILGDICEHSDNSFSSNIVRYLDDRRIQISDSSSLNDCIITLTKSFRFGNDSGIYQLSESIKKGDSNRVEEILHSDAYPDVTLVGPGNEAVDSLIENYATKPFRKAVYSKKYLDF--YYEYQILSALRKGKNGVEKLNQIIEHHIKKSIGIAQTNEWYEGRPVMITRNNRILQVKNG 420          
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: A0A3M8G526_9BACT (Exodeoxyribonuclease V subunit alpha n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G526_9BACT)

HSP 1 Score: 267 bits (683), Expect = 8.840e-82
Identity = 152/315 (48.25%), Postives = 205/315 (65.08%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKIIEALYLRDKRTSFALATPTGKAAQRLNESLSVEELKFSINPATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNSTNEFSKSLFSGFSSNKDSKNKVTPINDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPFLVDKKNGFTFKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            A  L  +KD V+I+G PGTGKT+TI+KI+ AL  ++   + A A PTGKAA R+N+SL     +F I  ATTIHKLL      G   Y +K  L  DV+IIDEASMLD++LWI++IRAL ++ +LI LGDKNQLASVEAGSIL DIC ++ N FS  L S    NK   N    +ND IIELTKS+RF+  SGI   ++ I +  +  V++LL S  YP++     ++E ++ ++Q + I  F    K+G  F+  N+ +ILCA ++GPFG + +N L E  +K   K    + WYEGRPILITRN++LLKV NG
Sbjct:  161 ATKLVFLKDFVVITGSPGTGKTYTIKKIVRALLDQNPDLNIAFAAPTGKAADRMNQSLVDFSEEFQIPRATTIHKLLAIGFRPGRTSY-KKELLDIDVLIIDEASMLDLSLWIQMIRALPDSCKLIALGDKNQLASVEAGSILGDICFDNDNTFSSGL-SNKIENKQVGNSTNKLNDSIIELTKSHRFEDSSGIAELAEAIKTENTGLVLDLLHSSEYPQLLMSEVNSEGLDLVLQDYGITHFDDFVKSGHLFEVLNKKKILCAFKQGPFGSDSINNLIETEIKSHYKIPAYQNWYEGRPILITRNNNLLKVYNG 473          
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: A0A521AGM4_9BACT (DNA helicase/exodeoxyribonuclease V, alpha subunit n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521AGM4_9BACT)

HSP 1 Score: 265 bits (676), Expect = 1.520e-80
Identity = 151/335 (45.07%), Postives = 219/335 (65.37%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKII--EALYLRDKRTSFALATPTGKAAQRLNESLSV----------EELKFSINPATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNSTNEFSKSLFSGFSS----NKDSKNKVTPINDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPFLVDKKNGFT----FKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            A+ LS +KD+V+ISGGPGTGKT+T+  II  +A+   D +   ALA PTGKAA+RL ES+            EE++     A T+HKLL +      F+Y+ KNKLP+D+V++DEASMLDI +W+RL++AL E+T+L++LGDK+QLASVE+GSIL DIC+   N FS  +    +       DS ++   INDC++ LTKSYRF ++SGIG F+  +N   +EE + LLKSD Y ++ +   SN+ ++++I  + +  F  +  +G          N+ +ILCALR+GPFGVEQ+N  AE+ ++       S+EWY GR ++ TRN S+LKV+NG
Sbjct:  164 ALCLSFLKDMVVISGGPGTGKTYTVLNIIAAQAMAASDDKFRIALAAPTGKAARRLIESIEAGKAQLPEPVQEEIEIP-ETALTVHKLLGAGYRQNQFRYHTKNKLPYDLVVVDEASMLDITMWVRLVQALDEDTKLVVLGDKDQLASVESGSILGDICAGD-NSFSVPVTQQIARITGMQIDSVDEHPVINDCVVFLTKSYRFGEESGIGKFANAVNRSDTEEALKLLKSDRYDDLNWQGLSNKNMKALIDTYAVQHF--ENYSGHAENEQLAQSNQRKILCALRRGPFGVEQINREAERKIRHRKGLLQSQEWYAGRIVMSTRNDSVLKVKNG 494          
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: A0A2D8CD07_9BACT (Exodeoxyribonuclease V subunit alpha n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CD07_9BACT)

HSP 1 Score: 260 bits (665), Expect = 6.330e-79
Identity = 149/332 (44.88%), Postives = 210/332 (63.25%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKIIEALYLRDKRTSF--ALATPTGKAAQRLNESLSV------EELKFSI---NPATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNSTNEFSKSLFSGFSSNKDSKNKVTP----INDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPF--LVDKKNGFTFKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            AV LS +KD+V++SGGPGTGKTFT+  II A  L      F  ALA PTGKAA+RL ESL        ++++  +   + A T+HKLL S+    +F +NE+N LP+D+VIIDEASMLD+N+W+RLIRA+  NT+LI+LGDK+QLASVEAGSIL DIC    N FS  +    S  + +   +      INDCI+ LTKSYRF + SGI  F+  +N    +  I +L+  +  ++ +  P++E +E++++ + +N       K       + N+ +ILCALRKGPFGVEQ+N   E  +K+         WYEGR ++ TRN +LL++RNG
Sbjct:  163 AVQLSFLKDIVVVSGGPGTGKTFTVLNIIAAHLLSKPEGDFRIALAAPTGKAARRLAESLEAGKNNLPDKMQGEVQIPDSAQTVHKLLGSDFRGASFSFNEENPLPYDLVIIDEASMLDMNMWVRLIRAIGSNTKLIVLGDKDQLASVEAGSILGDICGGD-NSFSDRIAKSISQIQGTNIPIVKDQPSINDCIVFLTKSYRFGENSGIQKFAAAVNESNPDLAIKILQDSNLTDLNWLEPTSENMETIVRDYAVNHHAEFQKKPQDQRLSASNKKKILCALRKGPFGVEQVNGKVESIIKRKHNILAGRIWYEGRIVMATRNDALLRIRNG 493          
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: A0A2D9FTQ6_9BACT (Exodeoxyribonuclease V subunit alpha n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FTQ6_9BACT)

HSP 1 Score: 254 bits (649), Expect = 1.550e-76
Identity = 151/332 (45.48%), Postives = 207/332 (62.35%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKIIEALYLRDKRTSF--ALATPTGKAAQRLNESLS------VEELKFSIN---PATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNSTNEFSKSLFSGFSSNK----DSKNKVTPINDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPF--LVDKKNGFTFKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            AV+LS +KD V+I+GGPGTGKT T+  II A        SF  ALA PTGKAA+RL ES+        +E +  +N    A T+HKLL +N    +F++NE+N LP+D+VI+DEASMLDINLW+ L RA+   T+LI LGDK+QLASVEAGSIL D+C    N FSKS+    S  K     +  + + INDC++ LTKSYRF + SGI   S+ IN   + EVI++L+   YP++ +   S E +  +   F +N +    ++      K+  R +ILCA+RK P GVE LN+  E S+K+      S  WY GRP++ TRN  +LK++NG
Sbjct:  165 AVILSFLKDFVVITGGPGTGKTHTVLSIILAHARLHSENSFHIALAAPTGKAARRLLESIESRKEGLADEFRDKVNIPETALTVHKLLAANHRGTSFRFNEQNPLPYDLVIVDEASMLDINLWVHLTRAIGPKTKLIALGDKDQLASVEAGSILGDLCQGD-NTFSKSIVESLSKVKGGMVQTSAENSSINDCVVFLTKSYRFGEDSGIQKLSQAINRSDAREVISILEDKKYPDVQWLPYSAENLAKVKNDFGLNHYESYTEEDPLAMMKAAGRRKILCAIRKSPAGVEVLNKDIEASIKRSQGMLQSNVWYHGRPVMATRNDPVLKIKNG 495          
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: A0A6A8Q7D1_9BACT (Exodeoxyribonuclease V subunit alpha n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q7D1_9BACT)

HSP 1 Score: 248 bits (632), Expect = 4.710e-74
Identity = 139/325 (42.77%), Postives = 203/325 (62.46%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKIIEALYLRDKRTSF--ALATPTGKAAQRLNESLSVEELKFSIN-----PATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNSTN---EFSKSLFSGFSSNKDSKNKVTPINDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPFLVDKKNGFTFKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            A+ LS ++DL+ ISGGPGTGKT  +  II AL        +  A+A PTGKA++RL++S+   +   +        A T+HKLL S+     FKY E NKLP+D++I+DEASMLDI++W+RL+RA++E+ +L++LGDK+QLASVEAGSIL D+C    +   E ++ L             +  IND ++ LTKSYRFD  SGI   +K IN   +   I LLKS+SY ++     S + I+S+I ++V++ +     +     S N  +ILCALR GPFGVE++N L EK +KK    +  +EWY  R ++  RN+ ++K+RNG
Sbjct:  165 ALTLSFMRDLLFISGGPGTGKTHAVLNIITALKTAKGGEDYRIAMAAPTGKASRRLSDSIQKGKNPITSQVDIPEEAVTVHKLLGSDYQGSTFKYGEHNKLPYDLIIVDEASMLDIHMWMRLVRAIAESAKLVILGDKDQLASVEAGSILGDVCMGENSFSVEAARCLLEVLGMEAPVNENLPVINDNMVFLTKSYRFDHTSGIKRLAKAINGSNAAGAIELLKSESYADLKLLSVSTQNIQSVIDEYVLHHYEQYSSHNDALGSSNGKKILCALRAGPFGVERINALGEKKIKKREGITAGQEWYPERIVMSKRNNPIVKIRNG 489          
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: UPI000377C07B (exodeoxyribonuclease V subunit alpha n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI000377C07B)

HSP 1 Score: 243 bits (621), Expect = 2.070e-72
Identity = 145/332 (43.67%), Postives = 205/332 (61.75%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKII--EALYLRDKRTSFALATPTGKAAQRLNESLSVEELKFSIN---------PATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNSTNEFSKSLFSGFSS----NKDSKNKVTPINDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPF--LVDKKNGFTFKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            A++LS +KDLV+I+GGPGTGKT T+  II   A   +D+    ALA PTGKAA+RL ES+     +   N          A T+HKLL S+    +FKY+E N LP+D+VIIDEASMLDINLW RL +A++  T+LI+LGDK+QLASVEAGSIL D+C    N FSK      +     + + +     INDCI+ LTKSYRF++ SGI   ++ IN G S++VI+LL+ + YP+I +   + E I  + + F ++ +    D+       + N  +ILCA+R+   GVE +N   E  +K+      +EEWY GRPI+ T+N    +++NG
Sbjct:  165 ALILSFLKDLVVITGGPGTGKTHTVLSIIAAHAQLHKDEVFHIALAAPTGKAARRLMESIEEGRKRLPKNLSAKVTIPETALTVHKLLGSDFRGSSFKYDENNPLPYDLVIIDEASMLDINLWGRLTKAIASGTKLIVLGDKDQLASVEAGSILGDLCQG-RNSFSKETAKAVAKVTGGSVEIEETAPSINDCIVFLTKSYRFEEGSGIQKLAESINKGDSKQVISLLEENKYPDIKWLPGTPENISYITKAFGVHHYRKYADETPQRMQTTANEKKILCAIRRSSVGVESINNRIESEIKREAGFLQNEEWYHGRPIMATKNDPATRIKNG 495          
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: UPI000CD81D3B (exodeoxyribonuclease V subunit alpha n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD81D3B)

HSP 1 Score: 236 bits (603), Expect = 9.670e-70
Identity = 139/339 (41.00%), Postives = 205/339 (60.47%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKIIEALYLRDKRTS----FALATPTGKAAQRLNESLS---------VEELKFSINPATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNSTNEFSKSLFSGFS-----SNKDSKNKVTPINDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPFLVDKKNGFTFKSFNRY------QILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            A+ LS IKDLV+ISGGPGTGKT+T+  II A  +  K  +     ALA PTGKAA+RL +S+           + L   +  A T+HKLL ++     FK+++ N LP+D++I+DEASMLDI++W+RLIRA+  +T+L++LGDK+QLASVEAGSIL D+C   TN FS  +          S   S+   + IND ++ LTKSYRF + SGI   +  IN   +++V+ LL+S +YP++ +F P     E ++ ++ I       K+   F+   R       +ILCA+RK   GV+ +N   E  +K+      S EWY+GR ++ T+N S +++RNG
Sbjct:  163 ALCLSFIKDLVVISGGPGTGKTYTVLNIIAAHTVASKNNNEDFKVALAAPTGKAARRLVDSIEDGKDSLPDKFKHLLGEVTEAQTVHKLLGASYRGNRFKFDQNNHLPYDLIIVDEASMLDIHMWVRLIRAIGPDTKLVVLGDKDQLASVEAGSILGDLCGG-TNSFSNEVAETIEQMIGVSLPISEAGTSSINDSLVFLTKSYRFKENSGIHKLAGAINDQDADKVLELLQSKNYPDLHWFEPDQSSFEKILHRYGIT----HHKDYVAFQDERRIDASHKKKILCAIRKTKLGVDSINNAVEIGIKRKNSLITSTEWYDGRLVMATKNDSTIRIRNG 496          
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: A0A2D4ZYL0_9BACT (RecBCD enzyme subunit RecD n=7 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A2D4ZYL0_9BACT)

HSP 1 Score: 233 bits (593), Expect = 1.420e-68
Identity = 136/318 (42.77%), Postives = 194/318 (61.01%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKIIEALYLRDKRTSFALATPTGKAAQRLNESLSVEELKFSINPATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNSTNEFSKSLFSGFSSNKDS---KNKVTPINDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPFLVDKKNGFTFKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            A +L+L K  ++ISGGPGTGKT+T++KII+AL +++     A+  PTGKAA+RLNES+S E        A T+HKLL + G +G FK+N+ NKL  D+VI+DEASMLD+ +WI LIRAL ++ RLI+LGDK+QL+SVEAGS+L DIC  S N FS        +N  S    N V  +ND I+ L K+YR  + +GI   +  IN    E +  +L+   + +I    P++ V+  +IQ +          +    K  N  Q LC+ ++G FG E LN L E  +K  L+     EW+EGR IL+T+N ++  + NG
Sbjct:  158 ATVLALFKSFLVISGGPGTGKTYTVKKIIKALKVQNPDVRIAITAPTGKAAERLNESVSDENEDIE---AITLHKLLGA-GFNGEFKFNKDNKLFHDIVIVDEASMLDLRMWIGLIRALKKSARLIVLGDKDQLSSVEAGSVLGDICFKSDNTFSNQTLELLKNNGLSVTGSNSVNNLNDNIVLLNKTYRSKESTGIPQLASAINEQDFESIDGILEGSEHIDIV--QPTSSVLSELIQTY----------SNEKIKGLNETQFLCSNKRGVFGTEHLNLLIENKIKDTLRIPSKIEWFEGRRILVTKNDAINGISNG 459          
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Match: A0A445MRK2_9DELT (RecBCD enzyme subunit RecD n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=A0A445MRK2_9DELT)

HSP 1 Score: 230 bits (587), Expect = 4.090e-67
Identity = 150/338 (44.38%), Postives = 207/338 (61.24%), Query Frame = 1
Query:    1 AVLLSLIKDLVIISGGPGTGKTFTIRKIIEALYLRDKRTS---FALATPTGKAAQRLNESL--------SVEELKFSIN-PATTIHKLLQSNGTSGNFKYNEKNKLPFDVVIIDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDIC-SNSTNEFSKSLFS------GFSSNKDSKNKVTPINDCIIELTKSYRFDKKSGIGIFSKLINSGQSEEVINLLKSDSYPEITFFH-PSNEVIESMIQQFVINPF---LVDKKNGFTFKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRPILITRNSSLLKVRNG 945
            A + +L K   +++GGPGTGKT T  KII AL L     S    ALA PTGKAA RL E++        S E +K +I   A+TIH+LL S   S  F+YNEKN+LPFDVVI+DEASM+D+ L  +L++ALS+  RLILLGDK+QL SVEAG++L DIC S S + FS+   S      G+        +   I+DCI+EL K+YRF K SGIG  S+++N+G +E  + ++  ++Y +I +   P+   +   I++ VI  F   +  K     F+   R+++LCALRKGPFGV  +N + E+ LKK       + WY GRP+LITRN   L + NG
Sbjct:  186 AAVAALYKRFCVVTGGPGTGKTTTAAKII-ALILEQAEKSKVRIALAGPTGKAASRLKEAIKSAKEELQSAERIKKAIPVEASTIHRLLGSIRGSAYFRYNEKNQLPFDVVIVDEASMVDMALMSKLVQALSQRARLILLGDKDQLESVEAGAVLGDICDSGSEHGFSEVFQSILKDICGYDIGCVVAKEEKRISDCIVELRKNYRFGKDSGIGEASRMVNAGDAEACLGIITGETYNDIKWKTLPTISNLPVAIRETVITGFGEYMKAKDLWDAFRLLERFRVLCALRKGPFGVTAINRMTEEILKKTGLIEPEKTWYAGRPVLITRNDYSLGLFNG 522          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80477.18846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1GCV2_9BACT4.470e-8949.21Exodeoxyribonuclease V subunit alpha (Fragment) n=... [more]
A0A3M8G526_9BACT8.840e-8248.25Exodeoxyribonuclease V subunit alpha n=1 Tax=Balne... [more]
A0A521AGM4_9BACT1.520e-8045.07DNA helicase/exodeoxyribonuclease V, alpha subunit... [more]
A0A2D8CD07_9BACT6.330e-7944.88Exodeoxyribonuclease V subunit alpha n=2 Tax=Balne... [more]
A0A2D9FTQ6_9BACT1.550e-7645.48Exodeoxyribonuclease V subunit alpha n=1 Tax=Balne... [more]
A0A6A8Q7D1_9BACT4.710e-7442.77Exodeoxyribonuclease V subunit alpha n=1 Tax=Balne... [more]
UPI000377C07B2.070e-7243.67exodeoxyribonuclease V subunit alpha n=1 Tax=Graci... [more]
UPI000CD81D3B9.670e-7041.00exodeoxyribonuclease V subunit alpha n=1 Tax=Graci... [more]
A0A2D4ZYL0_9BACT1.420e-6842.77RecBCD enzyme subunit RecD n=7 Tax=Bacteroidetes/C... [more]
A0A445MRK2_9DELT4.090e-6744.38RecBCD enzyme subunit RecD n=1 Tax=uncultured Desu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80477contigM-pyrifera_M_contig80477:2..946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score246.5
Seed ortholog evalue1.6e-62
Seed eggNOG ortholog1121930.AQXG01000003_gene2454
Preferred namerecD
KEGG koko:K03581
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008854,GO:0009338,GO:0009987,GO:0016020,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017076,GO:0017111,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043142,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1902494
EggNOG free text desc.A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
EggNOG OGs4NJCM@976,COG0507@1,COG0507@2
EC3.1.11.5
COG Functional cat.L
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size945
Cds size945
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.3719335-CDS-M-pyrifera_M_contig80477:1..9461622816710.3719335-CDS-M-pyrifera_M_contig80477:1..946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80477 2..946 -
1692278134.0067255-CDS-M-pyrifera_M_contig80477:1..9461692278134.0067255-CDS-M-pyrifera_M_contig80477:1..946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80477 2..946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80477.18846.1prot_M-pyrifera_M_contig80477.18846.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80477 2..946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80477.18846.1

>prot_M-pyrifera_M_contig80477.18846.1 ID=prot_M-pyrifera_M_contig80477.18846.1|Name=mRNA_M-pyrifera_M_contig80477.18846.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=315bp
AVLLSLIKDLVIISGGPGTGKTFTIRKIIEALYLRDKRTSFALATPTGKA
AQRLNESLSVEELKFSINPATTIHKLLQSNGTSGNFKYNEKNKLPFDVVI
IDEASMLDINLWIRLIRALSENTRLILLGDKNQLASVEAGSILNDICSNS
TNEFSKSLFSGFSSNKDSKNKVTPINDCIIELTKSYRFDKKSGIGIFSKL
INSGQSEEVINLLKSDSYPEITFFHPSNEVIESMIQQFVINPFLVDKKNG
FTFKSFNRYQILCALRKGPFGVEQLNELAEKSLKKILKTSVSEEWYEGRP
ILITRNSSLLKVRNG
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mRNA from alignment at M-pyrifera_M_contig80477:2..946-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80477.18846.1 ID=mRNA_M-pyrifera_M_contig80477.18846.1|Name=mRNA_M-pyrifera_M_contig80477.18846.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=945bp|location=Sequence derived from alignment at M-pyrifera_M_contig80477:2..946- (Macrocystis pyrifera P11B4 male)
GCTGTTCTGCTATCTTTGATTAAAGATTTAGTCATTATTTCTGGAGGGCC GGGAACGGGTAAAACCTTTACGATTAGAAAAATAATAGAGGCACTTTATC TAAGGGACAAAAGAACTAGTTTTGCGTTAGCTACTCCTACCGGGAAGGCA GCACAACGGTTAAATGAATCATTGAGCGTTGAGGAGTTGAAATTTTCCAT AAATCCTGCTACAACCATTCATAAGCTATTACAGAGTAATGGAACAAGTG GTAATTTTAAATATAATGAGAAAAATAAGCTTCCTTTTGATGTAGTGATA ATTGATGAAGCCTCAATGTTAGATATAAATCTTTGGATCAGACTAATAAG GGCACTTTCTGAAAATACAAGGCTCATTCTGTTAGGAGATAAGAATCAAC TAGCTTCAGTTGAAGCAGGTTCTATATTAAACGACATATGTTCCAACTCT ACTAATGAATTTTCGAAGTCCTTATTCTCTGGGTTTTCATCAAATAAAGA TTCAAAAAACAAAGTAACGCCAATTAATGACTGTATAATTGAGCTAACAA AAAGCTATCGTTTTGATAAAAAAAGCGGGATTGGAATATTCTCAAAGTTA ATCAATTCTGGGCAGTCGGAGGAGGTAATAAACCTTCTAAAGAGTGATTC CTATCCAGAAATAACTTTTTTTCATCCTTCAAATGAAGTTATTGAATCAA TGATACAGCAGTTTGTTATAAATCCCTTTTTAGTAGATAAAAAGAATGGA TTTACTTTCAAATCGTTTAATAGATATCAAATACTTTGTGCATTAAGAAA AGGTCCTTTTGGGGTTGAGCAGCTAAACGAATTAGCTGAGAAATCATTAA AAAAAATACTTAAAACTAGTGTTTCAGAGGAATGGTATGAAGGACGCCCT ATTCTAATTACTCGTAACAGCTCTCTATTAAAAGTTAGAAATGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80477:2..946-

>mRNA_M-pyrifera_M_contig80477.18846.1 ID=mRNA_M-pyrifera_M_contig80477.18846.1|Name=mRNA_M-pyrifera_M_contig80477.18846.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1890bp|location=Sequence derived from alignment at M-pyrifera_M_contig80477:2..946- (Macrocystis pyrifera P11B4 male)
GCTGTTCTGCTATCTTTGATTAAAGATTTAGTCATTATTTCTGGAGGGCC
GGGAACGGGTAAAACCTTTACGATTAGAAAAATAATAGAGGCACTTTATC
TAAGGGACAAAAGAACTAGTTTTGCGTTAGCTACTCCTACCGGGAAGGCA
GCACAACGGTTAAATGAATCATTGAGCGTTGAGGAGTTGAAATTTTCCAT
AAATCCTGCTACAACCATTCATAAGCTATTACAGAGTAATGGAACAAGTG
GTAATTTTAAATATAATGAGAAAAATAAGCTTCCTTTTGATGTAGTGATA
ATTGATGAAGCCTCAATGTTAGATATAAATCTTTGGATCAGACTAATAAG
GGCACTTTCTGAAAATACAAGGCTCATTCTGTTAGGAGATAAGAATCAAC
TAGCTTCAGTTGAAGCAGGTTCTATATTAAACGACATATGTTCCAACTCT
ACTAATGAATTTTCGAAGTCCTTATTCTCTGGGTTTTCATCAAATAAAGA
TTCAAAAAACAAAGTAACGCCAATTAATGACTGTATAATTGAGCTAACAA
AAAGCTATCGTTTTGATAAAAAAAGCGGGATTGGAATATTCTCAAAGTTA
ATCAATTCTGGGCAGTCGGAGGAGGTAATAAACCTTCTAAAGAGTGATTC
CTATCCAGAAATAACTTTTTTTCATCCTTCAAATGAAGTTATTGAATCAA
TGATACAGCAGTTTGTTATAAATCCCTTTTTAGTAGATAAAAAGAATGGA
TTTACTTTCAAATCGTTTAATAGATATCAAATACTTTGTGCATTAAGAAA
AGGTCCTTTTGGGGTTGAGCAGCTAAACGAATTAGCTGAGAAATCATTAA
AAAAAATACTTAAAACTAGTGTTTCAGAGGAATGGTATGAAGGACGCCCT
ATTCTAATTACTCGTAACAGCTCTCTATTAAAAGTTAGAAATGGGGCTGT
TCTGCTATCTTTGATTAAAGATTTAGTCATTATTTCTGGAGGGCCGGGAA
CGGGTAAAACCTTTACGATTAGAAAAATAATAGAGGCACTTTATCTAAGG
GACAAAAGAACTAGTTTTGCGTTAGCTACTCCTACCGGGAAGGCAGCACA
ACGGTTAAATGAATCATTGAGCGTTGAGGAGTTGAAATTTTCCATAAATC
CTGCTACAACCATTCATAAGCTATTACAGAGTAATGGAACAAGTGGTAAT
TTTAAATATAATGAGAAAAATAAGCTTCCTTTTGATGTAGTGATAATTGA
TGAAGCCTCAATGTTAGATATAAATCTTTGGATCAGACTAATAAGGGCAC
TTTCTGAAAATACAAGGCTCATTCTGTTAGGAGATAAGAATCAACTAGCT
TCAGTTGAAGCAGGTTCTATATTAAACGACATATGTTCCAACTCTACTAA
TGAATTTTCGAAGTCCTTATTCTCTGGGTTTTCATCAAATAAAGATTCAA
AAAACAAAGTAACGCCAATTAATGACTGTATAATTGAGCTAACAAAAAGC
TATCGTTTTGATAAAAAAAGCGGGATTGGAATATTCTCAAAGTTAATCAA
TTCTGGGCAGTCGGAGGAGGTAATAAACCTTCTAAAGAGTGATTCCTATC
CAGAAATAACTTTTTTTCATCCTTCAAATGAAGTTATTGAATCAATGATA
CAGCAGTTTGTTATAAATCCCTTTTTAGTAGATAAAAAGAATGGATTTAC
TTTCAAATCGTTTAATAGATATCAAATACTTTGTGCATTAAGAAAAGGTC
CTTTTGGGGTTGAGCAGCTAAACGAATTAGCTGAGAAATCATTAAAAAAA
ATACTTAAAACTAGTGTTTCAGAGGAATGGTATGAAGGACGCCCTATTCT
AATTACTCGTAACAGCTCTCTATTAAAAGTTAGAAATGGG
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