mRNA_M-pyrifera_M_contig80376.18830.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80376.18830.1
Unique NamemRNA_M-pyrifera_M_contig80376.18830.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: UPI000C76CBC6 (peptidyl-prolyl cis-trans isomerase-like 3 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76CBC6)

HSP 1 Score: 149 bits (376), Expect = 1.510e-43
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    4 FCRNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMAHRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFA 366
            F RN+ G  +QGGDPT TGKGGE++ GG   DEI   L+H  RGVVSMA+  P+ NGSQF+ITYAPQ   D  +++ G VIDGW+TLDA+E LPV  K  KP  G+EARI +V+IHANP A
Sbjct:   42 FTRNIKGFMVQGGDPTNTGKGGESIWGGKFNDEIKEDLKHKARGVVSMANSGPNTNGSQFYITYAPQPTLDLKYTVFGKVIDGWDTLDALERLPVNPKNFKPVKGEEARISNVTIHANPLA 162          
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: A0A7S3HA54_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HA54_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.710e-41
Identity = 69/121 (57.02%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    4 FCRNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMAHRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFA 366
            F RN+ G  LQGGDPTGTGKGGE+V GG+  DE  + L+HDKRG VSMA+  PD NGSQFFI+Y PQ   +  +++   +IDG + LDA+E +PVVGKK+KP   Q+ RI  ++IHANP A
Sbjct:   42 FHRNMRGFMLQGGDPTGTGKGGESVWGGHFADEFHSDLKHDKRGTVSMANNGPDTNGSQFFISYGPQPHLNNKYTVFAQIIDGIDILDALEKVPVVGKKSKPE--QDIRIEEITIHANPLA 160          
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: F2U524_SALR5 (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U524_SALR5)

HSP 1 Score: 139 bits (351), Expect = 9.700e-40
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   10 RNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMAHRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFAE 369
            RN+ G  +Q GDPTGTGKGGE++ GGY PDE    L+H+ RG+VSMA++ PD NGSQFFITY      D  ++IIG +IDG++TL+AIE  PV GKK +P    E RI SV++HANP AE
Sbjct:   44 RNIKGFIVQMGDPTGTGKGGESIWGGYFPDEFDITLKHNARGIVSMANQGPDTNGSQFFITYGKAPHLDRKYTIIGRMIDGFDTLEAIEKTPVKGKKHRPE--IEIRIRSVTLHANPIAE 161          
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: J9IFH0_9SPIT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IFH0_9SPIT)

HSP 1 Score: 139 bits (351), Expect = 2.310e-38
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    1 QFCRNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMAHRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFAEADIEEEE 390
            +F RN+ G  LQGGDPTGTGK GE++ GG   DEIS +L+HD+RG++SMA+  P++NGSQFFITYA Q   DG +SI G +IDG+ETLD +E    VGK  +P    +  I +V+IHANP AE   E +E
Sbjct:   42 KFHRNIRGFILQGGDPTGTGKSGESIWGGKFEDEISDLLKHDRRGILSMANSGPNQNGSQFFITYAKQTSLDGKYSIFGKLIDGFETLDKLEK-DAVGKNNRPL--NDLMITNVTIHANPLAEEYSERQE 168          
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: A0A078A650_STYLE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A650_STYLE)

HSP 1 Score: 135 bits (341), Expect = 4.790e-38
Identity = 66/129 (51.16%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 QFCRNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMAHRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFAEADIEEE 387
            +F RN+ G  LQGGDPTGTGKGG ++ G Y  DEI+  L+HD+RG++SMA+  P++NGSQFFITYA Q   DG ++I G +IDG++TL+ +E    VGK  +P    + +I  ++IHANP A+ D EE+
Sbjct:   42 KFHRNIKGFILQGGDPTGTGKGGASIYGQYFNDEINEGLKHDRRGILSMANSGPNKNGSQFFITYAKQTSLDGKYTIFGKLIDGFDTLEKLEH-EAVGKNNRPL--NDIKIEDITIHANPIADQDFEEQ 167          
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: A0A818Y385_9BILA (Peptidyl-prolyl cis-trans isomerase n=5 Tax=Rotaria TaxID=231623 RepID=A0A818Y385_9BILA)

HSP 1 Score: 135 bits (339), Expect = 5.690e-38
Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    4 FCRNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMAHRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFAE 369
            F RNV G  +Q GDP+GTGKGG+++ G Y PDEI   L+H +RG+VSMA R  D NGSQFFITY  Q   DG +++ G VIDG+ETLD +E +PV  K  +P    + RI  V+IHANP A+
Sbjct:   42 FHRNVKGYMIQTGDPSGTGKGGQSIWGEYFPDEIDPHLKHSQRGIVSMASRGADTNGSQFFITYGKQANLDGKYTVFGKVIDGFETLDELEKIPVNEKNYRPE--TDVRIQRVTIHANPLAD 161          
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: A0A8J8NHX2_HALGN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NHX2_HALGN)

HSP 1 Score: 135 bits (339), Expect = 9.910e-38
Identity = 72/132 (54.55%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    4 FCRNVAGAFLQGGDPTGTGKGGEAVR---GGYLPDEISTVLRHDKRGVVSMAHRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFAEADIEEEE 390
            F RN+ G  LQGGDPT TGKGG ++      Y  DEI   L+HDKRGV+SMA+   D+NGSQFFITYA Q   DG +++ G +IDG ETLD +E  PV GK  +P    E +++ V+IHANP AE D EEEE
Sbjct:   44 FHRNIRGFLLQGGDPTNTGKGGASIYPTPDHYFHDEIHPDLKHDKRGVLSMANSGKDKNGSQFFITYAKQGALDGKYTVFGQMIDGHETLDKLEKEPVGGKGNRPL--NEIKVVGVTIHANPIAEMDWEEEE 173          
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: A0A1Y2HN90_9FUNG (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HN90_9FUNG)

HSP 1 Score: 134 bits (337), Expect = 1.290e-37
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   10 RNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMAHRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFAEADI 378
            RN+    +Q GDPTG GKGGE++ GG   DEI T L+H+ RG+VSMA+  P+ NGSQ+FITY+ Q   D  +++ G VIDGWETLD +E LPV    AK  P +E RI +V+IHANP AE  +
Sbjct:   44 RNIKDFMVQTGDPTGKGKGGESIWGGKFDDEIRTTLKHNARGIVSMANNGPNSNGSQWFITYSKQPHLDSKYTVFGKVIDGWETLDELEKLPV---DAKYRPAKEVRIRNVTIHANPIAEKQL 163          
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: A0A7R9TKV3_9VIRI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TKV3_9VIRI)

HSP 1 Score: 134 bits (336), Expect = 3.750e-37
Identity = 71/123 (57.72%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    4 FCRNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMAHRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFAEA 372
            F RN+ G  +QGGDPTGTGKGG ++ GG   DEI   LRH KRGVVSMA+   D N SQFFITYA     DG +++ G +IDG++TLDA+E  PV GKK KP      R  SV+IHANPFA A
Sbjct:   68 FHRNMRGFMVQGGDPTGTGKGGASIWGGAFADEIVPQLRHHKRGVVSMANSGKDTNKSQFFITYAKAKHLDGQYTVFGHLIDGFDTLDAMEKAPVEGKKCKPVTPIVVR--SVTIHANPFAAA 188          
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Match: A0A1D3CY43_9EIME (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A1D3CY43_9EIME)

HSP 1 Score: 132 bits (331), Expect = 1.040e-36
Identity = 68/125 (54.40%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    4 FCRNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMAHR-APDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKKAKPTPGQEARILSVSIHANPFAEAD 375
            F RN+ G  +Q GDPT TGKGGE++ GG+  DE  + L+HD+RGV+SMA++ AP+ NGSQFFITY+ Q   +G++++ G +IDG +TLD IE  PV GKK +P    E +ILSV IHANP A+A+
Sbjct:   42 FTRNIKGFAVQTGDPTNTGKGGESIYGGFFEDEFVSSLKHDRRGVLSMANQGAPNTNGSQFFITYSRQPHLNGVYTVFGRLIDGMDTLDKIEKEPV-GKKNRPI--NEIKILSVVIHANPIADAE 163          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80376.18830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C76CBC61.510e-4359.50peptidyl-prolyl cis-trans isomerase-like 3 n=1 Tax... [more]
A0A7S3HA54_9STRA3.710e-4157.02Peptidyl-prolyl cis-trans isomerase n=1 Tax=Spumel... [more]
F2U524_SALR59.700e-4057.50Peptidyl-prolyl cis-trans isomerase n=1 Tax=Salpin... [more]
J9IFH0_9SPIT2.310e-3854.62Peptidyl-prolyl cis-trans isomerase n=1 Tax=Oxytri... [more]
A0A078A650_STYLE4.790e-3851.16Peptidyl-prolyl cis-trans isomerase n=1 Tax=Stylon... [more]
A0A818Y385_9BILA5.690e-3854.10Peptidyl-prolyl cis-trans isomerase n=5 Tax=Rotari... [more]
A0A8J8NHX2_HALGN9.910e-3854.55Peptidyl-prolyl cis-trans isomerase n=1 Tax=Halter... [more]
A0A1Y2HN90_9FUNG1.290e-3753.66Peptidyl-prolyl cis-trans isomerase n=1 Tax=Catena... [more]
A0A7R9TKV3_9VIRI3.750e-3757.72Peptidyl-prolyl cis-trans isomerase n=1 Tax=Prasin... [more]
A0A1D3CY43_9EIME1.040e-3654.40Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cyclos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80376contigM-pyrifera_M_contig80376:498..887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score139.8
Seed ortholog evalue8.9e-31
Seed eggNOG ortholog946362.XP_004995976.1
Preferred namePPIL3
KEGG koko:K01802,ko:K12734,ko:K22190
KEGG TC1.A.37.2
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016567,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0032446,GO:0032991,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070647,GO:0071013,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990904
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGs3A033@33154,COG0652@1,KOG0884@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko03041,ko03110
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.1535044-CDS-M-pyrifera_M_contig80376:497..8871622816709.1535044-CDS-M-pyrifera_M_contig80376:497..887Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80376 498..887 -
1692278133.1706705-CDS-M-pyrifera_M_contig80376:497..8871692278133.1706705-CDS-M-pyrifera_M_contig80376:497..887Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80376 498..887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80376.18830.1prot_M-pyrifera_M_contig80376.18830.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80376 498..887 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80376.18830.1

>prot_M-pyrifera_M_contig80376.18830.1 ID=prot_M-pyrifera_M_contig80376.18830.1|Name=mRNA_M-pyrifera_M_contig80376.18830.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
QFCRNVAGAFLQGGDPTGTGKGGEAVRGGYLPDEISTVLRHDKRGVVSMA
HRAPDENGSQFFITYAPQVGFDGLFSIIGTVIDGWETLDAIEALPVVGKK
AKPTPGQEARILSVSIHANPFAEADIEEEE
back to top

mRNA from alignment at M-pyrifera_M_contig80376:498..887-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80376.18830.1 ID=mRNA_M-pyrifera_M_contig80376.18830.1|Name=mRNA_M-pyrifera_M_contig80376.18830.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig80376:498..887- (Macrocystis pyrifera P11B4 male)
CAATTTTGCAGGAATGTTGCTGGTGCATTTTTGCAAGGAGGGGATCCAAC AGGGACTGGAAAGGGTGGTGAGGCTGTACGTGGGGGTTATTTACCAGACG AGATATCTACAGTGCTTCGACACGACAAAAGAGGAGTTGTTTCCATGGCA CATCGGGCACCAGATGAAAATGGGAGCCAATTCTTCATCACATATGCCCC ACAAGTTGGATTTGATGGCCTATTTAGTATTATTGGCACTGTAATTGATG GTTGGGAAACTCTAGATGCAATTGAAGCTCTGCCTGTTGTCGGCAAGAAA GCAAAACCAACGCCTGGCCAAGAAGCACGCATTCTCTCCGTCTCCATACA CGCAAACCCGTTTGCAGAAGCTGACATAGAGGAAGAAGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80376:498..887-

>mRNA_M-pyrifera_M_contig80376.18830.1 ID=mRNA_M-pyrifera_M_contig80376.18830.1|Name=mRNA_M-pyrifera_M_contig80376.18830.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig80376:498..887- (Macrocystis pyrifera P11B4 male)
CAATTTTGCAGGAATGTTGCTGGTGCATTTTTGCAAGGAGGGGATCCAAC
AGGGACTGGAAAGGGTGGTGAGGCTGTACGTGGGGGTTATTTACCAGACG
AGATATCTACAGTGCTTCGACACGACAAAAGAGGAGTTGTTTCCATGGCA
CATCGGGCACCAGATGAAAATGGGAGCCAATTCTTCATCACATATGCCCC
ACAAGTTGGATTTGATGGCCTATTTAGTATTATTGGCACTGTAATTGATG
GTTGGGAAACTCTAGATGCAATTGAAGCTCTGCCTGTTGTCGGCAAGAAA
GCAAAACCAACGCCTGGCCAAGAAGCACGCATTCTCTCCGTCTCCATACA
CGCAAACCCGTTTGCAGAAGCTGACATAGAGGAAGAAGAACAATTTTGCA
GGAATGTTGCTGGTGCATTTTTGCAAGGAGGGGATCCAACAGGGACTGGA
AAGGGTGGTGAGGCTGTACGTGGGGGTTATTTACCAGACGAGATATCTAC
AGTGCTTCGACACGACAAAAGAGGAGTTGTTTCCATGGCACATCGGGCAC
CAGATGAAAATGGGAGCCAATTCTTCATCACATATGCCCCACAAGTTGGA
TTTGATGGCCTATTTAGTATTATTGGCACTGTAATTGATGGTTGGGAAAC
TCTAGATGCAATTGAAGCTCTGCCTGTTGTCGGCAAGAAAGCAAAACCAA
CGCCTGGCCAAGAAGCACGCATTCTCTCCGTCTCCATACACGCAAACCCG
TTTGCAGAAGCTGACATAGAGGAAGAAGAA
back to top