mRNA_M-pyrifera_M_contig80310.18818.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80310.18818.1
Unique NamemRNA_M-pyrifera_M_contig80310.18818.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: K3WTQ5_GLOUD (DUF2062 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTQ5_GLOUD)

HSP 1 Score: 65.9 bits (159), Expect = 1.300e-11
Identity = 33/78 (42.31%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   13 QDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIALIPLFVY 246
            ++++ APV+++L+SG + E +AL++A G  GG+FP+PG+TTV   L + L   N V A + N ++TPL++A +P+F+Y
Sbjct:    6 EEKVKAPVVKLLKSGASPESIALAMAFGVSGGIFPIPGVTTVPVMLAIFLFRLNPVAAMLTNYLVTPLNLASLPVFIY 83          
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: F0W2A7_9STRA (Uncharacterized protein AlNc14C9G1157 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2A7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.430e-11
Identity = 32/79 (40.51%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   10 IQDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIALIPLFVY 246
            +Q+R+  P+M+VL+SG + + +AL++A G  GG+FP+PG+T+V   L   +   N V A + N + TP+++A  PLF+Y
Sbjct:    5 LQERVTKPLMKVLKSGASPQSIALALAFGVTGGVFPLPGITSVPVMLATIIFRLNPVAAMLTNYLATPINVASFPLFIY 83          
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: A0A8K1CMK0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMK0_PYTOL)

HSP 1 Score: 64.7 bits (156), Expect = 3.700e-11
Identity = 34/80 (42.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    4 GCIQDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIALIPLFV 243
            G  ++++  PV+++L+SG + E +AL++A G  GG+FPVPGLTTV   + + L   N V A + N + TP++IA +PLF+
Sbjct:    3 GFFEEKVKGPVVKLLKSGASPESIALAMAFGVSGGIFPVPGLTTVPVMVAIFLFRLNPVAAMLTNYLCTPINIATVPLFI 82          
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: A0A5D6XVT3_9STRA (DUF2062 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVT3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.460e-10
Identity = 30/78 (38.46%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   13 QDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIALIPLFVY 246
            ++++ AP++++L+SG + + +AL++A G  GG+FP+PG+T+V   + + L   N V A + N + TPL++A +PLF+Y
Sbjct:    6 EEKVKAPIVKLLKSGASPDSIALAMAFGVSGGIFPIPGVTSVPVMIAIYLFRLNPVAAMLTNYLCTPLNVASVPLFIY 83          
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: D0NGZ7_PHYIT (DUF2062 domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=D0NGZ7_PHYIT)

HSP 1 Score: 62.8 bits (151), Expect = 2.010e-10
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   13 QDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIALIPLFVY 246
            + ++ APV+++L+SG +   +A+++A G  GG+FP+PG+TTV   + + L   N V A + N ++TPL+IA +P+F+Y
Sbjct:    6 EQKVKAPVVKLLKSGASPSSIAMAMAFGVSGGIFPIPGVTTVPVMVAIFLFRLNPVAAMLTNYLVTPLNIAAVPVFIY 83          
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: A0A0P1ANP9_PLAHL (DUF2062 domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANP9_PLAHL)

HSP 1 Score: 62.4 bits (150), Expect = 2.830e-10
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   13 QDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIALIPLFVY 246
            Q +I  PV+++L+SG +   +AL++A G  GG+FP+PG+TTV     + L   N V A + N ++TPL+IA IP F+Y
Sbjct:    6 QQKIKDPVIKLLKSGASPSSIALAMAFGVSGGVFPIPGVTTVPVMAAIFLFRLNPVAAMLTNYIVTPLNIAAIPFFIY 83          
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: H3GZX1_PHYRM (DUF2062 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZX1_PHYRM)

HSP 1 Score: 62.4 bits (150), Expect = 2.830e-10
Identity = 32/78 (41.03%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   13 QDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIALIPLFVY 246
            + ++  PVM++L+SG +   +AL++A G  GG+FP+PG+TTV     + L   N V A + N ++TPL+IA +P+F+Y
Sbjct:    6 EQKVKTPVMKLLKSGASPSSIALAMAFGVSGGIFPIPGVTTVPVMAAIFLFRLNPVAAMLTNYLVTPLNIASVPVFIY 83          
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: A0A0L0D9S8_THETB (Cytoplasmic membrane protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9S8_THETB)

HSP 1 Score: 62.0 bits (149), Expect = 3.370e-10
Identity = 32/75 (42.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 MGCIQDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIA 225
            M  I D++V PV++V++SG T E +A ++  G +GG+FP+PGLT++ C L   LL  N+V     N  +TPL++A
Sbjct:    1 MQFIHDKVVTPVVQVMKSGTTPEAIADALGWGVMGGIFPIPGLTSLPCLLLAYLLSLNVVPVMAANFAVTPLNLA 75          
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: G4YKZ6_PHYSP (DUF2062 domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=G4YKZ6_PHYSP)

HSP 1 Score: 62.8 bits (151), Expect = 3.650e-10
Identity = 33/78 (42.31%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   13 QDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIALIPLFVY 246
            + ++ APV+++L+SG +   +AL++A G  GG+FPVPG+TTV     + L   N V A + N ++TPL+IA +P+F+Y
Sbjct:    6 EQKVKAPVVKLLKSGASPSSIALAMAFGVSGGIFPVPGVTTVPVMAAIFLFRLNPVAAMLTNYLVTPLNIASVPVFIY 83          
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Match: A0A3M6VA03_9STRA (DUF2062 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VA03_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.560e-9
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   13 QDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTLFVALLGANLVLANVLNLVLTPLSIALIPLFVY 246
            +  +  P++++L+SG +   +AL++A G  GG+FP+PG+TTV     + L   N V A + N ++TPL+IA IP+F+Y
Sbjct:    6 EQNVKTPIVKLLKSGASPSSIALAMAFGVSGGIFPIPGVTTVPVMAAIFLFRLNPVAAMLTNYLMTPLNIASIPVFIY 83          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80310.18818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WTQ5_GLOUD1.300e-1142.31DUF2062 domain-containing protein n=1 Tax=Globispo... [more]
F0W2A7_9STRA3.430e-1140.51Uncharacterized protein AlNc14C9G1157 n=1 Tax=Albu... [more]
A0A8K1CMK0_PYTOL3.700e-1142.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XVT3_9STRA1.460e-1038.46DUF2062 domain-containing protein n=1 Tax=Pythium ... [more]
D0NGZ7_PHYIT2.010e-1039.74DUF2062 domain-containing protein n=7 Tax=Phytopht... [more]
A0A0P1ANP9_PLAHL2.830e-1043.59DUF2062 domain-containing protein n=1 Tax=Plasmopa... [more]
H3GZX1_PHYRM2.830e-1041.03DUF2062 domain-containing protein n=1 Tax=Phytopht... [more]
A0A0L0D9S8_THETB3.370e-1042.67Cytoplasmic membrane protein n=1 Tax=Thecamonas tr... [more]
G4YKZ6_PHYSP3.650e-1042.31DUF2062 domain-containing protein n=13 Tax=Phytoph... [more]
A0A3M6VA03_9STRA1.560e-939.74DUF2062 domain-containing protein n=1 Tax=Peronosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80310contigM-pyrifera_M_contig80310:570..879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue6.1e-09
Seed eggNOG ortholog36331.EPrPI00000021124
Preferred nameINT3
KEGG koko:K08150
KEGG TC2.A.1.1.25,2.A.1.1.62,2.A.1.1.63,2.A.1.1.66,2.A.1.8
Hectar predicted targeting categorysignal anchor
GOsGO:0000325,GO:0003674,GO:0005215,GO:0005351,GO:0005355,GO:0005365,GO:0005366,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009705,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015166,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0015791,GO:0015798,GO:0015850,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0023052,GO:0031090,GO:0031224,GO:0031226,GO:0034219,GO:0034220,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046323,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0090406,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805,GO:0120025,GO:1901618,GO:1902600,GO:1904659
EggNOG free text desc.Proton myo-inositol cotransporter. Source PGD
EggNOG OGs1MFS4@121069,KOG0254@1,KOG0254@2759
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.7021458-CDS-M-pyrifera_M_contig80310:569..7571622816708.7021458-CDS-M-pyrifera_M_contig80310:569..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80310 570..757 -
1692278132.941928-CDS-M-pyrifera_M_contig80310:569..7571692278132.941928-CDS-M-pyrifera_M_contig80310:569..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80310 570..757 -
1622816708.714016-CDS-M-pyrifera_M_contig80310:821..8791622816708.714016-CDS-M-pyrifera_M_contig80310:821..879Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80310 822..879 -
1692278132.9553745-CDS-M-pyrifera_M_contig80310:821..8791692278132.9553745-CDS-M-pyrifera_M_contig80310:821..879Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80310 822..879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80310.18818.1prot_M-pyrifera_M_contig80310.18818.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80310 570..879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80310.18818.1

>prot_M-pyrifera_M_contig80310.18818.1 ID=prot_M-pyrifera_M_contig80310.18818.1|Name=mRNA_M-pyrifera_M_contig80310.18818.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MGCIQDRIVAPVMRVLRSGVTAEKLALSIAIGFVGGLFPVPGLTTVVCTL
FVALLGANLVLANVLNLVLTPLSIALIPLFVY
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mRNA from alignment at M-pyrifera_M_contig80310:570..879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80310.18818.1 ID=mRNA_M-pyrifera_M_contig80310.18818.1|Name=mRNA_M-pyrifera_M_contig80310.18818.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=310bp|location=Sequence derived from alignment at M-pyrifera_M_contig80310:570..879- (Macrocystis pyrifera P11B4 male)
ATGGGCTGTATTCAGGATAGAATTGTGGCGCCTGTCATGCGCGTGCTGCG ATCAGGAGGTGCGGATTCGGGGTTGCGCGTCGCTGGTGCGCGAAAACCGC CAGAACTGACACAGCCGAGCAGTAACAGCAGAGAAGCTGGCCCTGTCCAT CGCAATCGGCTTTGTGGGAGGCCTCTTCCCCGTGCCTGGGCTCACAACGG TTGTGTGCACTCTGTTCGTGGCGCTGCTGGGCGCCAACTTGGTCCTGGCG AACGTCCTGAACCTCGTCCTGACACCGCTGAGCATTGCCCTCATCCCTCT CTTCGTGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80310:570..879-

>mRNA_M-pyrifera_M_contig80310.18818.1 ID=mRNA_M-pyrifera_M_contig80310.18818.1|Name=mRNA_M-pyrifera_M_contig80310.18818.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig80310:570..879- (Macrocystis pyrifera P11B4 male)
ATGGGCTGTATTCAGGATAGAATTGTGGCGCCTGTCATGCGCGTGCTGCG
ATCAGGAGATGGGCTGTATTCAGGATAGAATTGTGGCGCCTGTCATGCGC
GTGCTGCGATCAGGAGTAACAGCAGAGAAGCTGGCCCTGTCCATCGCAAT
CGGCTTTGTGGGAGGCCTCTTCCCCGTGCCTGGGCTCACAACGGTTGTGT
GCACTCTGTTCGTGGCGCTGCTGGGCGCCAACTTGGTCCTGGCGAACGTC
CTGAACCTCGTCCTGACACCGCTGAGCATTGCCCTCATCCCTCTCTTCGT
GTACTAACAGCAGAGAAGCTGGCCCTGTCCATCGCAATCGGCTTTGTGGG
AGGCCTCTTCCCCGTGCCTGGGCTCACAACGGTTGTGTGCACTCTGTTCG
TGGCGCTGCTGGGCGCCAACTTGGTCCTGGCGAACGTCCTGAACCTCGTC
CTGACACCGCTGAGCATTGCCCTCATCCCTCTCTTCGTGTAC
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