mRNA_M-pyrifera_M_contig803.18812.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig803.18812.1
Unique NamemRNA_M-pyrifera_M_contig803.18812.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: D8LUC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC3_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 7.700e-43
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDKENMDYNKLRVKQLKGILADRGVDCNG 216
            CY F PIKKTISHPFSTGMPK+KVCQRLKASNAE+CE+KYPIKVDKENMDYNKLRVKQLKGILADRGVDC+G
Sbjct:   32 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDG 103
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: A0A6H5KPX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX9_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 7.100e-41
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDKENMDYNKLRVKQLKGILADRGVDCNG 216
            CY F PIKKTISHPFSTGMPK KVCQRLKASNAE+CE+KYPIKVDKENMDYNKLRVKQLKGILADRGVDC+G
Sbjct:  151 CYYFLPIKKTISHPFSTGMPKSKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDG 222
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: A0A7S0XC71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XC71_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.230e-27
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDK---ENMDYNKLRVKQLKGILADRGVDCNG 216
            CY F PIKK+IS PF+TGMPK KVCQRL+  N EICEVKYP+KV+K   E  DYNKL+VKQLK IL++RGV C G
Sbjct:   91 CYLFEPIKKSISTPFATGMPKAKVCQRLQKDNPEICEVKYPLKVEKKEGEATDYNKLKVKQLKEILSNRGVTCTG 165
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: A0A836CA80_9STRA (Armet protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA80_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.320e-27
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDKENMDYNKLRVKQLKGILADRGVDCNG 216
            CY+   IKK +S PFS G+PK+KVCQRLK  NA+IC ++YPIKVDK N+DYN LRVK LK ILA+RG  C+G
Sbjct:   74 CYNLVTIKKHVSQPFSLGLPKLKVCQRLKKDNADICNMQYPIKVDKGNVDYNTLRVKALKSILAERGARCDG 145
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: A0A7S2SV22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV22_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.640e-25
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDKENM--DYNKLRVKQLKGILADRGVDCNG 216
            CY+  PIKK++SHPFS  MPK KVCQRLK  N +ICE+K+P+KV KE    D +KLRVKQLK IL DRGV+C G
Sbjct:   87 CYNMEPIKKSVSHPFSLRMPKKKVCQRLKKDNPDICEIKFPVKVAKEAKPEDVSKLRVKQLKQILNDRGVECKG 160
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: A0A7S2Y4H6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4H6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.900e-25
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDKENMDYNKLRVKQLKGILADRGVDCNG 216
            CY   PIK+ +S PFSTGMPK KVCQRL   N +IC VKYP+KV+K+  DY+KLRVK LK ILA+RGV+C G
Sbjct:   76 CYYLDPIKRAVSQPFSTGMPKNKVCQRLTKDNPDICAVKYPMKVEKDT-DYSKLRVKALKQILAERGVECTG 146
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: A0A4D9D3E5_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3E5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.490e-24
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDKENMDYNKLRVKQLKGILADRGVDCNG 216
            CY   PIK+ +S PFSTGMPK KVC RLK  +AEIC +KYP+KVD +  DY KLRVK+LK ILA+RGV+C G
Sbjct:   77 CYFLKPIKRDVSQPFSTGMPKAKVCARLKKKSAEICGIKYPVKVDSQT-DYTKLRVKELKAILAERGVECTG 147
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: A0A7R9VPQ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VPQ9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.460e-23
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCNG 216
            CY   PIK+ ++ PFSTGMP  +VC+R+  SN EIC VK+PIK +K E  D +KLRVKQLK ILADRGV+C G
Sbjct:   73 CYYIDPIKRDVAQPFSTGMPPDRVCKRINQSNPEICGVKFPIKTEKLEPKDLSKLRVKQLKSILADRGVECKG 145
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: A0A7S3V952_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V952_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.020e-22
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCNG 216
            CY   PIK+ ++HP S GM   KVC+R+  SN EIC VK+P+K +K E  D  KLRVKQLK ILADRGV+CNG
Sbjct:   98 CYYIDPIKRDVAHPISLGMSSKKVCERMNKSNPEICTVKFPVKTEKMEKKDIKKLRVKQLKAILADRGVECNG 170
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BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Match: A0A7S0C2I3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C2I3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.340e-22
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCNG 216
            CY   PIK++++ PFSTG+P  +VC+R+  SN EIC VK+PIK +K E  D  KLRVKQLK IL DRGV+C G
Sbjct:   55 CYYIDPIKRSVAQPFSTGIPAERVCKRINQSNPEICTVKFPIKTEKMEKKDLTKLRVKQLKSILGDRGVECKG 127
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig803.18812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUC3_ECTSI7.700e-4391.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPX9_9PHAE7.100e-4191.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0XC71_9STRA1.230e-2769.33Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A836CA80_9STRA8.320e-2765.28Armet protein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S2SV22_9STRA5.640e-2564.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2Y4H6_9STRA7.900e-2565.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D3E5_9STRA9.490e-2465.28Bifunctional lysine-specific demethylase and histi... [more]
A0A7R9VPQ9_9STRA7.460e-2361.64Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3V952_9STRA1.020e-2260.27Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S0C2I3_9STRA1.340e-2258.90Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig803contigM-pyrifera_M_contig803:1543..3288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue3.4e-32
Seed eggNOG ortholog2880.D8LUC3
Preferred nameMANF
KEGG koko:K13190
Hectar predicted targeting categoryother localisation
GOsGO:0001963,GO:0001976,GO:0001980,GO:0002014,GO:0002576,GO:0003008,GO:0003013,GO:0003018,GO:0003073,GO:0003084,GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005829,GO:0006584,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0008015,GO:0008150,GO:0008152,GO:0008217,GO:0008289,GO:0009712,GO:0009987,GO:0012505,GO:0016043,GO:0016192,GO:0017144,GO:0018958,GO:0019725,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031974,GO:0032501,GO:0032502,GO:0032940,GO:0035150,GO:0035296,GO:0042310,GO:0042417,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045777,GO:0046903,GO:0048468,GO:0048471,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050880,GO:0051179,GO:0051234,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070050,GO:0071542,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090066,GO:0097164,GO:0097746,GO:0097756,GO:0098916,GO:0099536,GO:0099537,GO:0120036,GO:1901360,GO:1901564,GO:1901615,GO:1905897
EggNOG free text desc.neurotrophic factor
EggNOG OGsKOG4154@1,KOG4154@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons2
Model size217
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.306384-CDS-M-pyrifera_M_contig803:1542..16631622816708.306384-CDS-M-pyrifera_M_contig803:1542..1663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 1543..1663 +
1692278132.6463976-CDS-M-pyrifera_M_contig803:1542..16631692278132.6463976-CDS-M-pyrifera_M_contig803:1542..1663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 1543..1663 +
1622816708.3219702-CDS-M-pyrifera_M_contig803:3193..32881622816708.3219702-CDS-M-pyrifera_M_contig803:3193..3288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 3194..3288 +
1692278132.6607573-CDS-M-pyrifera_M_contig803:3193..32881692278132.6607573-CDS-M-pyrifera_M_contig803:3193..3288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 3194..3288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig803.18812.1prot_M-pyrifera_M_contig803.18812.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig803 1543..3288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig803.18812.1

>prot_M-pyrifera_M_contig803.18812.1 ID=prot_M-pyrifera_M_contig803.18812.1|Name=mRNA_M-pyrifera_M_contig803.18812.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
CYSFTPIKKTISHPFSTGMPKVKVCQRLKASNAEICEVKYPIKVDKENMD
YNKLRVKQLKGILADRGVDCNG
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mRNA from alignment at M-pyrifera_M_contig803:1543..3288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig803.18812.1 ID=mRNA_M-pyrifera_M_contig803.18812.1|Name=mRNA_M-pyrifera_M_contig803.18812.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at M-pyrifera_M_contig803:1543..3288+ (Macrocystis pyrifera P11B4 male)
TGCTACTCATTCACGCCTATCAAGAAAACGATATCGCACCCGTTCTCCAC
GGGTATGCCGAAGGTCAAGGTCTGCCAGCGACTGAAGGCGTCCAACGCAG
AAATCTGCGAGGTCAAATACCGTGAGTGTTGGCCTGCTACAAAAATAGTC
TGGAAGATAATGTCGTGAAGCGCTCCCTGTCATACTTGTTTTGGCCCTTT
TGTGGTGCGGCACACTCCGAATGGATGCCGTGAGAATGATTTGAATCAAA
ATTTGAAGAACACACACTCGGCTGTTGAGATCGAAATTTTAATTTTCCTC
AAAACCAGTTTTTGCGAGCTATTACATCACAGTATATACAGCAGCGGAAG
CGTGGAAGGGAAGCGAAAGCTGTTGTGATGGAAGTGACGGAAGTGCCATA
AAAAAATGCCTCGTGATGCATGTCAGTCTTTTTGCGGTAGGTGGCAAAAC
ACCGCCGCGTTACGTTTCTGCACGAAAAACGATCAGAACGACAAAAAACA
AAGCAGCCGCCTCACTCGGCTGGGAGGTGATGATAGTTAGGTTTCGTCGA
TCGCGTGCTATATACGAGATTCGTATATACGACCTCTCATGAAGGGCAGT
AGGTGGGTGGCTGCCCCCAAATATTTTCGACTATCACTTGAAAGAAAGCG
GCGGTTTTAGCGTAATGTTTTCGGGGGCGCAGAGGAATCAGAACCGAGGG
GTGGCCCGAAAACCATGTGCGCCTCCTATGTTTACGCACATTTGGTTCTG
ATTGCTGTGTTGTCACGTTATTGTAATGCCAATGGATTTCGTGAGGTGGT
GCTGCTGGTCCGCACTCGTGCCAGCTCTATGCGCCGACGGTTGCGCTGAT
GATTCCGGCACTACCATTTCATAGATCAATCGTTGTCTTACATCAAGCAA
CGTTGAGGGCCGCCGTGGATGCTGGCTGACAAGAGTTAGAGACGGTCGAT
GAGAGAGACAGGTGGCGACCATCCCCTTCCTCCGCAGGCAATTCGGAGGG
AAACCCGCGGAAGGAAGCCTGTATAACTGCTGTCGCGGGAGTATTGTGTG
GTCCTTTTTTTTATTTTTTCTTGTTCGTATTTGTTTTACAACATGCCCGT
CTTGGATGGGTGCAGATCGCGATTTTGCCGTCGGTGTGCGGTATTCCTTG
CCTGGTTGCTTGTTGTTGTTGCGGCGGACCCGCGAAACAACTTGCATTAC
ACAATGCACCTCCACTGTTCTCGGTCTTTGCTGTCCACACGTTATAAGTA
TTTCACGATTTATCTGTCTATAGATGGATGATCTAGATCCTGAGCTGCAT
CATCTAGACCCTGACCTGCAGGATCTGTATAGTACAGATCCAACCCAGGA
AACGTGTCCCACTGTTGTAATTCTTGCTGACTGTATGAGTCCCACTCGGC
AGCATGAACTATGAATAGATCACACAGATCAGGGCTGCATCTACGAAGTA
TGTAGATGATGCAGTGCAGTGGGAATCGATGGCCTGTCCTAAGTTTGGAT
TTGTTGCTCTAAATTCGCTTGTAACGAGTCCGAGCGAGACGGCACCGCGG
CGTTCCCTCACCCACCACCGTTCGACCCAACGAGCCTGCATCGTCCTCGC
CGCTCGCCCTCCTCGACTCGACTGCCCCTCTGCTCCAATATCGTCCCGCA
GCCATCAAGGTCGATAAGGAAAACATGGATTACAACAAGCTGCGCGTAAA
GCAGCTCAAGGGCATCCTGGCAGACCGGGGGGTGGACTGCAACGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig803:1543..3288+

>mRNA_M-pyrifera_M_contig803.18812.1 ID=mRNA_M-pyrifera_M_contig803.18812.1|Name=mRNA_M-pyrifera_M_contig803.18812.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig803:1543..3288+ (Macrocystis pyrifera P11B4 male)
TGCTACTCATTCACGCCTATCAAGAAAACGATATCGCACCCGTTCTCCAC
GGGTATGCCGAAGGTCAAGGTCTGCCAGCGACTGAAGGCGTCCAACGCAG
AAATCTGCGAGGTCAAATACCTGCTACTCATTCACGCCTATCAAGAAAAC
GATATCGCACCCGTTCTCCACGGGTATGCCGAAGGTCAAGGTCTGCCAGC
GACTGAAGGCGTCCAACGCAGAAATCTGCGAGGTCAAATACCCCATCAAG
GTCGATAAGGAAAACATGGATTACAACAAGCTGCGCGTAAAGCAGCTCAA
GGGCATCCTGGCAGACCGGGGGGTGGACTGCAACGGCCCATCAAGGTCGA
TAAGGAAAACATGGATTACAACAAGCTGCGCGTAAAGCAGCTCAAGGGCA
TCCTGGCAGACCGGGGGGTGGACTGCAACGGC
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