mRNA_M-pyrifera_M_contig80234.18802.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80234.18802.1
Unique NamemRNA_M-pyrifera_M_contig80234.18802.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80234.18802.1 vs. uniprot
Match: A0A2E9VIV7_9PLAN (Uncharacterized protein n=1 Tax=Rubinisphaera sp. TaxID=2024857 RepID=A0A2E9VIV7_9PLAN)

HSP 1 Score: 68.2 bits (165), Expect = 7.610e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 TTILSLVFCLQGCLGFSQKPE-LSSEQKLVIACHQLNVPAVVKLLNSGADVNARFGDEATTEHFQDPWFGGNPVTASQW 240
            T +LSLV  L+     S  PE LS +Q+L++AC+QL+   V KLLNSGADVNA++  +   E F+D W  G P   SQW
Sbjct:   10 TILLSLVSALRAEDNNSANPESLSVDQQLILACYQLDEDQVQKLLNSGADVNAKYLSKNFNELFRDRWTEGYPAAVSQW 88
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BLAST of mRNA_M-pyrifera_M_contig80234.18802.1 vs. uniprot
Match: A0A5C5XKC9_9PLAN (Ankyrin repeats (3 copies) n=1 Tax=Rubinisphaera italica TaxID=2527969 RepID=A0A5C5XKC9_9PLAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.830e-7
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   19 SLVFCLQGCLGFSQKPELSSE-----QKLVIACHQLNVPAVVKLLNSGADVNARFGDEATTEHFQDPWFGGNPVTASQ 237
            +LVF L   L    K   +SE     Q+L++AC+QL+   V KLLNSGADVNA+   +   E F+D W  G P   SQ
Sbjct:   10 TLVFSLVSALCAEDKNSANSESLSVDQQLILACYQLDEVQVQKLLNSGADVNAKILSKNFKELFRDHWTQGTPGAISQ 87
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80234.18802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E9VIV7_9PLAN7.610e-1248.10Uncharacterized protein n=1 Tax=Rubinisphaera sp. ... [more]
A0A5C5XKC9_9PLAN1.830e-743.59Ankyrin repeats (3 copies) n=1 Tax=Rubinisphaera i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80234contigM-pyrifera_M_contig80234:711..950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.8422117-CDS-M-pyrifera_M_contig80234:710..9501622816707.8422117-CDS-M-pyrifera_M_contig80234:710..950Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80234 711..950 +
1692278132.4025939-CDS-M-pyrifera_M_contig80234:710..9501692278132.4025939-CDS-M-pyrifera_M_contig80234:710..950Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80234 711..950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80234.18802.1prot_M-pyrifera_M_contig80234.18802.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80234 711..950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80234.18802.1

>prot_M-pyrifera_M_contig80234.18802.1 ID=prot_M-pyrifera_M_contig80234.18802.1|Name=mRNA_M-pyrifera_M_contig80234.18802.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MRTTILSLVFCLQGCLGFSQKPELSSEQKLVIACHQLNVPAVVKLLNSGA
DVNARFGDEATTEHFQDPWFGGNPVTASQW
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mRNA from alignment at M-pyrifera_M_contig80234:711..950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80234.18802.1 ID=mRNA_M-pyrifera_M_contig80234.18802.1|Name=mRNA_M-pyrifera_M_contig80234.18802.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig80234:711..950+ (Macrocystis pyrifera P11B4 male)
ATGCGAACAACGATCTTATCGCTCGTATTCTGCTTGCAAGGTTGCCTTGG
GTTCAGCCAAAAACCCGAATTGAGTTCCGAACAAAAACTGGTAATCGCTT
GCCATCAACTGAATGTGCCGGCCGTGGTTAAGCTCTTGAATTCAGGCGCG
GATGTTAACGCGAGGTTCGGCGACGAAGCTACCACAGAACATTTTCAAGA
CCCTTGGTTTGGCGGCAATCCGGTGACCGCGTCTCAATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80234:711..950+

>mRNA_M-pyrifera_M_contig80234.18802.1 ID=mRNA_M-pyrifera_M_contig80234.18802.1|Name=mRNA_M-pyrifera_M_contig80234.18802.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig80234:711..950+ (Macrocystis pyrifera P11B4 male)
ATGCGAACAACGATCTTATCGCTCGTATTCTGCTTGCAAGGTTGCCTTGG
GTTCAGCCAAAAACCCGAATTGAGTTCCGAACAAAAACTGGTAATCGCTT
GCCATCAACTGAATGTGCCGGCCGTGGTTAAGCTCTTGAATTCAGGCGCG
GATGTTAACGCGAGGTTCGGCGACGAAGCTACCACAGAACATTTTCAAGA
CCCTTGGTTTGGCGGCAATCCGGTGACCGCGTCTCAATGGATGCGAACAA
CGATCTTATCGCTCGTATTCTGCTTGCAAGGTTGCCTTGGGTTCAGCCAA
AAACCCGAATTGAGTTCCGAACAAAAACTGGTAATCGCTTGCCATCAACT
GAATGTGCCGGCCGTGGTTAAGCTCTTGAATTCAGGCGCGGATGTTAACG
CGAGGTTCGGCGACGAAGCTACCACAGAACATTTTCAAGACCCTTGGTTT
GGCGGCAATCCGGTGACCGCGTCTCAATGG
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