mRNA_M-pyrifera_M_contig80191.18793.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80191.18793.1
Unique NamemRNA_M-pyrifera_M_contig80191.18793.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig80191.18793.1 vs. uniprot
Match: A0A5A8E4Y4_CAFRO (Hypothetical protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E4Y4_CAFRO)

HSP 1 Score: 121 bits (304), Expect = 2.510e-29
Identity = 74/149 (49.66%), Postives = 95/149 (63.76%), Query Frame = 1 
Query:   19 PVLLSIFLSIFAIVTITSFFTVLPAEDPNLPLTLIHVKNGTDLIGRLLTFFPAPFGRPQSLLFAVIGRFLLLPVFLFYAFGNTFV-SDAFAITLVAVSAVISGYLNTSAFIIAAKLVKPNEKSSATGFVNVSFQGAVLLSVGFAFAILS 462
            P LLSIF+SIFAIV ITSFFT  P+ +P+LP TL  VKNG D +G+ LT  P        L+ A   RF+ LP+F  + F      +D F I LVA SAVISGYLNTS F IAAK V   ++ +A   VN+SFQ ++L S+  +F I++
Sbjct:  370 PSLLSIFISIFAIVCITSFFTAAPSPNPSLPATLFFVKNGCDFLGKALTLLPPLIRSQWQLVLASAVRFVPLPLFFLHVFTPVLGRNDVFLIALVAASAVISGYLNTSCFQIAAKTVNAEQRPAAKLLVNLSFQTSLLASIALSFTIMA 518
[Close]
BLAST of mRNA_M-pyrifera_M_contig80191.18793.1 vs. uniprot
Match: A0A5A8E5G9_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E5G9_CAFRO)

HSP 1 Score: 121 bits (304), Expect = 5.680e-29
Identity = 74/149 (49.66%), Postives = 95/149 (63.76%), Query Frame = 1 
Query:   19 PVLLSIFLSIFAIVTITSFFTVLPAEDPNLPLTLIHVKNGTDLIGRLLTFFPAPFGRPQSLLFAVIGRFLLLPVFLFYAFGNTFV-SDAFAITLVAVSAVISGYLNTSAFIIAAKLVKPNEKSSATGFVNVSFQGAVLLSVGFAFAILS 462
            P LLSIF+SIFAIV ITSFFT  P+ +P+LP TL  VKNG D +G+ LT  P        L+ A   RF+ LP+F  + F      +D F I LVA SAVISGYLNTS F IAAK V   ++ +A   VN+SFQ ++L S+  +F I++
Sbjct:  779 PSLLSIFISIFAIVCITSFFTAAPSPNPSLPATLFFVKNGCDFLGKALTLLPPLIRSQWQLVLASAVRFVPLPLFFLHVFTPVLGRNDVFLIALVAASAVISGYLNTSCFQIAAKTVNAEQRPAAKLLVNLSFQTSLLASIALSFTIMA 927
[Close]
BLAST of mRNA_M-pyrifera_M_contig80191.18793.1 vs. uniprot
Match: A0A812QLX1_9DINO (UxaA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QLX1_9DINO)

HSP 1 Score: 121 bits (304), Expect = 6.000e-29
Identity = 74/149 (49.66%), Postives = 95/149 (63.76%), Query Frame = 1 
Query:   19 PVLLSIFLSIFAIVTITSFFTVLPAEDPNLPLTLIHVKNGTDLIGRLLTFFPAPFGRPQSLLFAVIGRFLLLPVFLFYAFGNTFV-SDAFAITLVAVSAVISGYLNTSAFIIAAKLVKPNEKSSATGFVNVSFQGAVLLSVGFAFAILS 462
            P LLSIF+SIFAIV ITSFFT  P+ +P+LP TL  VKNG D +G+ LT  P        L+ A   RF+ LP+F  + F      +D F I LVA SAVISGYLNTS F IAAK V   ++ +A   VN+SFQ ++L S+  +F I++
Sbjct:  370 PSLLSIFISIFAIVCITSFFTAAPSPNPSLPATLFFVKNGCDFLGKALTLLPPLIRSQWQLVLASAVRFVPLPLFFLHVFTPVLGRNDVFLIALVAASAVISGYLNTSCFQIAAKTVNAEQRPAAKLLVNLSFQTSLLASIALSFTIMA 518
[Close]
BLAST of mRNA_M-pyrifera_M_contig80191.18793.1 vs. uniprot
Match: A0A7S3YMZ8_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YMZ8_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 9.460e-9
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:    1 VFVRIHPVLLSIFLSIFAIVTITSFFTVLPAEDPNLPLTLIHVKNGTDLIGRLLTFFPAPFGRPQSLLFAVIGRFLLLPVFLFYAFGNTFVSDAFAITLVAVSAVISGYLNTSAFIIAAKLVKPN-EKSSATGFVNVSF 414
            +F+ + P +LSIFL+IFA V +  F+T  P     LP  L   K  +D  GR LT          +LL A   R L L +F     G    S A  I +VAV +  SG++ TSA+ +A K+VK +  KS     +N +F
Sbjct:  401 IFLTVAPCVLSIFLNIFASVFLLPFYTYFPTTLHKLPQLLFFTKLMSDTFGRPLTLMLPAVQSQYTLLGAACVRILSLGIFFADILGYLQWSPAQCILMVAVFSAASGFIGTSAYQLAPKMVKGSLRKSQVANMLNFAF 539
[Close]
BLAST of mRNA_M-pyrifera_M_contig80191.18793.1 vs. uniprot
Match: A0A7S0USG3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0USG3_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 5.080e-7
Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:   13 IHPVLLSIFLSIFAIVTITSFFTVLPAED---PNLPLTLIHVKNGTDLIGRLLTFFPAPFGRPQSLLFAVIGRFLLLPVFLFYAFGN----TFVSDAFAITLVAVSAVISGYLNTSAFIIAAKLVKPNEKSSATGFVNVSFQGAVLLSVGFAFAI 456
            + P  L+IFLS+   + +  FFT           LP  L +++ G D+IGRL+         P  L ++ + + L+ P+ LF+   +      V D     LV    ++SG+LNT A++ A  LV P +K+ A+G + V+FQ + LL++  A AI
Sbjct:   48 VSPAALAIFLSVGTSMIVFPFFTFTRPSGLWGTRLPQVLFYLRLGGDIIGRLIPRRLQSTHVPSLLGWSTL-KVLMTPILLFFILHSRTYSAVVDDIVLGLLVTTFWILSGFLNTCAYLTAPTLVPPAQKARASGVMTVAFQTSCLLALLAAAAI 201
[Close]
BLAST of mRNA_M-pyrifera_M_contig80191.18793.1 vs. uniprot
Match: A0A7S0UKY1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UKY1_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 1.130e-6
Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:   13 IHPVLLSIFLSIFAIVTITSFFTVLPAED---PNLPLTLIHVKNGTDLIGRLLTFFPAPFGRPQSLLFAVIGRFLLLPVFLFYAFGN----TFVSDAFAITLVAVSAVISGYLNTSAFIIAAKLVKPNEKSSATGFVNVSFQGAVLLSVGFAFAI 456
            + P  L+IFLS+   + +  FFT           LP  L +++ G D+IGRL+         P  L ++ + + L+ P+ LF+   +      V D     LV    ++SG+LNT A++ A  LV P +K+ A+G + V+FQ + LL++  A AI
Sbjct:  208 VSPAALAIFLSVGTSMIVFPFFTFTRPSGLWGTRLPQVLFYLRLGGDIIGRLIPRRLQSTHVPSLLGWSTL-KVLMTPILLFFILHSRTYSAVVDDIVLGLLVTTFWILSGFLNTCAYLTAPTLVPPAQKARASGVMTVAFQTSCLLALLAAAAI 361
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80191.18793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A8E4Y4_CAFRO2.510e-2949.66Hypothetical protein n=2 Tax=Cafeteria roenbergens... [more]
A0A5A8E5G9_CAFRO5.680e-2949.66Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A812QLX1_9DINO6.000e-2949.66UxaA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S3YMZ8_9EUKA9.460e-935.97Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S0USG3_9CHLO5.080e-731.61Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A7S0UKY1_9CHLO1.130e-631.61Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80191contigM-pyrifera_M_contig80191:13..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.5368402-CDS-M-pyrifera_M_contig80191:12..4981622816707.5368402-CDS-M-pyrifera_M_contig80191:12..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80191 13..498 +
1692278132.2842631-CDS-M-pyrifera_M_contig80191:12..4981692278132.2842631-CDS-M-pyrifera_M_contig80191:12..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80191 13..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80191.18793.1prot_M-pyrifera_M_contig80191.18793.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80191 13..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80191.18793.1

>prot_M-pyrifera_M_contig80191.18793.1 ID=prot_M-pyrifera_M_contig80191.18793.1|Name=mRNA_M-pyrifera_M_contig80191.18793.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
VFVRIHPVLLSIFLSIFAIVTITSFFTVLPAEDPNLPLTLIHVKNGTDLI
GRLLTFFPAPFGRPQSLLFAVIGRFLLLPVFLFYAFGNTFVSDAFAITLV
AVSAVISGYLNTSAFIIAAKLVKPNEKSSATGFVNVSFQGAVLLSVGFAF
AILSAVTAAAR*
back to top

mRNA from alignment at M-pyrifera_M_contig80191:13..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80191.18793.1 ID=mRNA_M-pyrifera_M_contig80191.18793.1|Name=mRNA_M-pyrifera_M_contig80191.18793.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig80191:13..498+ (Macrocystis pyrifera P11B4 male)
GTGTTTGTTCGCATCCACCCAGTGCTCCTTTCCATCTTCCTCTCCATCTT
CGCCATTGTGACCATCACTTCCTTCTTCACAGTCTTGCCTGCCGAAGACC
CCAACTTGCCCCTCACTCTCATCCACGTCAAGAACGGCACCGACCTCATC
GGTCGACTCCTCACCTTCTTCCCTGCGCCATTTGGCCGTCCACAATCCCT
CCTCTTTGCGGTCATTGGACGGTTCCTCCTCCTCCCAGTTTTCCTCTTCT
ACGCCTTTGGAAACACCTTCGTCTCAGACGCATTCGCAATCACCCTTGTC
GCAGTCTCCGCAGTGATCTCAGGATACCTCAACACTTCTGCGTTCATCAT
CGCCGCAAAACTCGTCAAACCCAACGAAAAATCCTCCGCAACAGGATTCG
TCAACGTCTCCTTCCAAGGAGCAGTTCTGCTCTCCGTAGGCTTTGCGTTC
GCCATCCTCTCAGCAGTCACTGCTGCAGCACGATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80191:13..498+

>mRNA_M-pyrifera_M_contig80191.18793.1 ID=mRNA_M-pyrifera_M_contig80191.18793.1|Name=mRNA_M-pyrifera_M_contig80191.18793.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig80191:13..498+ (Macrocystis pyrifera P11B4 male)
GTGTTTGTTCGCATCCACCCAGTGCTCCTTTCCATCTTCCTCTCCATCTT
CGCCATTGTGACCATCACTTCCTTCTTCACAGTCTTGCCTGCCGAAGACC
CCAACTTGCCCCTCACTCTCATCCACGTCAAGAACGGCACCGACCTCATC
GGTCGACTCCTCACCTTCTTCCCTGCGCCATTTGGCCGTCCACAATCCCT
CCTCTTTGCGGTCATTGGACGGTTCCTCCTCCTCCCAGTTTTCCTCTTCT
ACGCCTTTGGAAACACCTTCGTCTCAGACGCATTCGCAATCACCCTTGTC
GCAGTCTCCGCAGTGATCTCAGGATACCTCAACACTTCTGCGTTCATCAT
CGCCGCAAAACTCGTCAAACCCAACGAAAAATCCTCCGCAACAGGATTCG
TCAACGTCTCCTTCCAAGGAGCAGTTCTGCTCTCCGTAGGCTTTGCGTTC
GCCATCCTCTCAGCAGTCACTGCTGCAGCACGATGAGTGTTTGTTCGCAT
CCACCCAGTGCTCCTTTCCATCTTCCTCTCCATCTTCGCCATTGTGACCA
TCACTTCCTTCTTCACAGTCTTGCCTGCCGAAGACCCCAACTTGCCCCTC
ACTCTCATCCACGTCAAGAACGGCACCGACCTCATCGGTCGACTCCTCAC
CTTCTTCCCTGCGCCATTTGGCCGTCCACAATCCCTCCTCTTTGCGGTCA
TTGGACGGTTCCTCCTCCTCCCAGTTTTCCTCTTCTACGCCTTTGGAAAC
ACCTTCGTCTCAGACGCATTCGCAATCACCCTTGTCGCAGTCTCCGCAGT
GATCTCAGGATACCTCAACACTTCTGCGTTCATCATCGCCGCAAAACTCG
TCAAACCCAACGAAAAATCCTCCGCAACAGGATTCGTCAACGTCTCCTTC
CAAGGAGCAGTTCTGCTCTCCGTAGGCTTTGCGTTCGCCATCCTCTCAGC
AGTCACTGCTGCAGCACGATGA
back to top