mRNA_M-pyrifera_M_contig80179.18788.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80179.18788.1
Unique NamemRNA_M-pyrifera_M_contig80179.18788.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80179.18788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80179contigM-pyrifera_M_contig80179:538..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.1872077-CDS-M-pyrifera_M_contig80179:537..8701622816707.1872077-CDS-M-pyrifera_M_contig80179:537..870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80179 538..870 -
1692278132.0365736-CDS-M-pyrifera_M_contig80179:537..8701692278132.0365736-CDS-M-pyrifera_M_contig80179:537..870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80179 538..870 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.1982064-UTR-M-pyrifera_M_contig80179:870..9001622816707.1982064-UTR-M-pyrifera_M_contig80179:870..900Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80179 871..900 -
1692278132.048617-UTR-M-pyrifera_M_contig80179:870..9001692278132.048617-UTR-M-pyrifera_M_contig80179:870..900Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80179 871..900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80179.18788.1prot_M-pyrifera_M_contig80179.18788.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80179 538..870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80179.18788.1

>prot_M-pyrifera_M_contig80179.18788.1 ID=prot_M-pyrifera_M_contig80179.18788.1|Name=mRNA_M-pyrifera_M_contig80179.18788.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MPELHFLQGKKELALKEIEEILALYEDDKEEKPLYRTYMIYGDILSDAGR
LDDALKAYDEAIEVIHLVMGGNEKLLGEVLIGIGRALAHVEKWQDAEHQL
AEGCRLMAKMT
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mRNA from alignment at M-pyrifera_M_contig80179:538..900-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80179.18788.1 ID=mRNA_M-pyrifera_M_contig80179.18788.1|Name=mRNA_M-pyrifera_M_contig80179.18788.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig80179:538..900- (Macrocystis pyrifera P11B4 male)
TTGAGCAAGAGGCAGACTGTGCTTTTGAATATGCCTGAACTACACTTCCT
GCAAGGGAAGAAGGAGCTCGCTCTGAAGGAGATAGAAGAGATCCTCGCTC
TCTACGAGGACGACAAGGAAGAGAAGCCTCTCTATCGCACGTATATGATC
TACGGCGACATTCTCTCTGATGCTGGGAGACTTGACGATGCACTGAAGGC
TTATGATGAAGCCATTGAGGTAATCCACCTCGTCATGGGTGGCAACGAGA
AGCTGCTCGGCGAAGTTCTCATTGGCATTGGGCGAGCTCTGGCTCATGTG
GAGAAGTGGCAAGATGCTGAGCACCAGCTCGCAGAGGGCTGTCGCTTGAT
GGCAAAAATGACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80179:538..900-

>mRNA_M-pyrifera_M_contig80179.18788.1 ID=mRNA_M-pyrifera_M_contig80179.18788.1|Name=mRNA_M-pyrifera_M_contig80179.18788.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig80179:538..900- (Macrocystis pyrifera P11B4 male)
ATGCCTGAACTACACTTCCTGCAAGGGAAGAAGGAGCTCGCTCTGAAGGA
GATAGAAGAGATCCTCGCTCTCTACGAGGACGACAAGGAAGAGAAGCCTC
TCTATCGCACGTATATGATCTACGGCGACATTCTCTCTGATGCTGGGAGA
CTTGACGATGCACTGAAGGCTTATGATGAAGCCATTGAGGTAATCCACCT
CGTCATGGGTGGCAACGAGAAGCTGCTCGGCGAAGTTCTCATTGGCATTG
GGCGAGCTCTGGCTCATGTGGAGAAGTGGCAAGATGCTGAGCACCAGCTC
GCAGAGGGCTGTCGCTTGATGGCAAAAATGACAATGCCTGAACTACACTT
CCTGCAAGGGAAGAAGGAGCTCGCTCTGAAGGAGATAGAAGAGATCCTCG
CTCTCTACGAGGACGACAAGGAAGAGAAGCCTCTCTATCGCACGTATATG
ATCTACGGCGACATTCTCTCTGATGCTGGGAGACTTGACGATGCACTGAA
GGCTTATGATGAAGCCATTGAGGTAATCCACCTCGTCATGGGTGGCAACG
AGAAGCTGCTCGGCGAAGTTCTCATTGGCATTGGGCGAGCTCTGGCTCAT
GTGGAGAAGTGGCAAGATGCTGAGCACCAGCTCGCAGAGGGCTGTCGCTT
GATGGCAAAAATGACA
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