mRNA_M-pyrifera_M_contig80129.18780.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80129.18780.1
Unique NamemRNA_M-pyrifera_M_contig80129.18780.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: A0A7S4IBS3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IBS3_9EUKA)

HSP 1 Score: 279 bits (714), Expect = 1.900e-90
Identity = 129/212 (60.85%), Postives = 158/212 (74.53%), Query Frame = 1
Query:   10 TGPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIARIFQTED 645
            +G  W+WML RL+ FA  L PAW+ +A FYL SENIKRNVRYG + RNF DIYYPD  L G  APVL+FF GGAWIIGYKAWGALF+ TL  MGI+CV PDYRNFPQG+V  ML+D   AI W   NI+ YGGDP RVY+AGQSAGAHL   ++L++   EN+  ++ +W+ + I  FIGISGPYD+  M++HFH+RGLHR V A +F+  D
Sbjct:   36 SGIKWVWMLCRLIAFAICLLPAWISLAWFYLRSENIKRNVRYGPKPRNFLDIYYPDDVLAGTPAPVLIFFTGGAWIIGYKAWGALFSKTLMNMGILCVNPDYRNFPQGNVEDMLEDTDQAIQWVLDNIRNYGGDPARVYVAGQSAGAHLALTSILRRQQEENSHTNEEKWKTKKICSFIGISGPYDVEKMKEHFHKRGLHRNVFAEMFKMRD 247          
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: B8A2I7_MAIZE (Abhydrolase_3 domain-containing protein n=2 Tax=Zea mays TaxID=4577 RepID=B8A2I7_MAIZE)

HSP 1 Score: 201 bits (511), Expect = 7.660e-61
Identity = 98/205 (47.80%), Postives = 125/205 (60.98%), Query Frame = 1
Query:   13 GPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIAR 627
            G  W+   L L  +  LL P ++ V  +Y  S  + R+V YG + RN  D+Y P    G K  PV+ F  GGAWIIGYK WGAL    L + GI+    DYRNFPQG +G M++D S  IA+  KNI  YGGDP R+YL GQSAGAH+ A ALL Q + E+ E     W V  +  + GISG Y+LL++ DHFHRRGL+R +  R
Sbjct:   84 GYRWIRQFLALCCYTLLLMPGFIQVVYYYFFSSQVHRSVVYGDQPRNRLDLYMPTSTTGLK--PVVAFVTGGAWIIGYKGWGALLGRRLAERGIIVACIDYRNFPQGTIGDMVEDASQGIAFVCKNITSYGGDPSRIYLVGQSAGAHIAACALLNQAIRESGEGDTSSWSVSQLKAYFGISGGYNLLNLVDHFHRRGLYRSIFLR 286          
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: A0A5J9T891_9POAL (Abhydrolase_3 domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9T891_9POAL)

HSP 1 Score: 200 bits (508), Expect = 8.840e-60
Identity = 97/211 (45.97%), Postives = 128/211 (60.66%), Query Frame = 1
Query:   13 GPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIARIFQTED 645
            G  W+   L L  +  LL P ++ V  +Y  S  ++R+V YG + RN  D+Y P   +G K  PV+ F  GGAWIIGYK WGAL    L + GI+    DYRNFPQG +G M++DVS  I++   NI  YGGDP R+YL GQSAGAH+ A AL  Q + E  E     W +  I  + GISG Y+LL++ DHFHRRGL+R +   I + E+
Sbjct:   16 GYRWIRQFLALCCYTLLLMPGFVQVVYYYFFSSQVRRSVVYGDQPRNRLDLYIPTSTMGLK--PVVAFVTGGAWIIGYKGWGALLGRRLAERGIIVACIDYRNFPQGTIGDMVEDVSQGISFVCNNIASYGGDPGRIYLVGQSAGAHIAACALFNQAIKECGEGDAASWSISQIKTYFGISGGYNLLNLVDHFHRRGLYRSIFLSIMEGEE 224          
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: IMCL2_ORYSJ (Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 n=6 Tax=Oryzeae TaxID=147380 RepID=IMCL2_ORYSJ)

HSP 1 Score: 199 bits (505), Expect = 1.850e-59
Identity = 96/211 (45.50%), Postives = 133/211 (63.03%), Query Frame = 1
Query:   13 GPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIARIFQTED 645
            G  WM  LL L I+A LL P +L V  +Y  S  ++R++ YG + RN  D+Y P      +  PV+ F  GGAWIIGYKAWG+L    L + GI+    DYRNFPQG +G M+ D S  I++   NI  YGGDP+R+YL GQSAGAH+ A AL++Q + E++ +S + W V  I  + G+SG Y++ S+ DHFH RGL+R +   I + E+
Sbjct:   78 GYRWMSQLLALTIYAILLMPGFLQVGYYYFFSSQVRRSIVYGEQPRNRLDLYIPKDI--NRPCPVVAFVTGGAWIIGYKAWGSLLGRRLAERGIIVACIDYRNFPQGTIGDMVSDASQGISYVCNNIASYGGDPNRIYLVGQSAGAHIAACALIEQAVKESSGQS-ISWSVTQIKAYFGLSGGYNMHSLVDHFHERGLNRSIFFSIMEGEE 285          
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: A0A835FS13_9POAL (Abhydrolase_3 domain-containing protein n=3 Tax=Paniceae TaxID=147428 RepID=A0A835FS13_9POAL)

HSP 1 Score: 201 bits (510), Expect = 2.710e-59
Identity = 100/211 (47.39%), Postives = 129/211 (61.14%), Query Frame = 1
Query:   13 GPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIARIFQTED 645
            G  W+   L L  +  LL P ++ V  +Y  S  + R+V YG + RN  D+Y P    G K  PV+ F  GGAWIIGYK WGAL    L + GIV    DYRNFPQG +G M++DVS  I++   NI  YGGDP+R+YL GQSAGAH+ A ALL Q + E  E  +  W V  I  + GISG Y+LL++ DHFHRRGL+R +   I + E+
Sbjct:   87 GYRWIRQFLALCCYTFLLMPGFIQVVYYYFFSSQVHRSVVYGDQPRNRLDLYIPTSKTGLK--PVVAFVTGGAWIIGYKGWGALLGRRLAERGIVVACIDYRNFPQGTIGDMVEDVSQGISFVCNNIASYGGDPNRIYLVGQSAGAHIAACALLNQAIRECGEGDNSFWSVSQIKAYFGISGGYNLLNLVDHFHRRGLYRSIFLSIMEGEE 295          
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: A0A804PCZ9_MAIZE (Abhydrolase_3 domain-containing protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804PCZ9_MAIZE)

HSP 1 Score: 202 bits (515), Expect = 3.080e-59
Identity = 99/210 (47.14%), Postives = 127/210 (60.48%), Query Frame = 1
Query:   13 GPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIARIFQTE 642
            G  W+   L L  +  LL P ++ V  +Y  S  + R+V YG + RN  D+Y P    G K  PV+ F  GGAWIIGYK WGAL    L + GI+    DYRNFPQG +G M++D S  IA+  KNI  YGGDP R+YL GQSAGAH+ A ALL Q + E+ E     W V  +  + GISG Y+LL++ DHFHRRGL+R +   I + E
Sbjct:  170 GYRWIRQFLALCCYTLLLMPGFIQVVYYYFFSSQVHRSVVYGDQPRNRLDLYMPTSTTGLK--PVVAFVTGGAWIIGYKGWGALLGRRLAERGIIVACIDYRNFPQGTIGDMVEDASQGIAFVCKNITSYGGDPSRIYLVGQSAGAHIAACALLNQAIRESGEGDTSSWSVSQLKAYFGISGGYNLLNLVDHFHRRGLYRSIFLSIMEGE 377          
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: A0A1D6GVU0_MAIZE (Carboxylesterase-like protein n=6 Tax=Andropogoneae TaxID=147429 RepID=A0A1D6GVU0_MAIZE)

HSP 1 Score: 202 bits (515), Expect = 3.430e-59
Identity = 99/210 (47.14%), Postives = 127/210 (60.48%), Query Frame = 1
Query:   13 GPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIARIFQTE 642
            G  W+   L L  +  LL P ++ V  +Y  S  + R+V YG + RN  D+Y P    G K  PV+ F  GGAWIIGYK WGAL    L + GI+    DYRNFPQG +G M++D S  IA+  KNI  YGGDP R+YL GQSAGAH+ A ALL Q + E+ E     W V  +  + GISG Y+LL++ DHFHRRGL+R +   I + E
Sbjct:  170 GYRWIRQFLALCCYTLLLMPGFIQVVYYYFFSSQVHRSVVYGDQPRNRLDLYMPTSTTGLK--PVVAFVTGGAWIIGYKGWGALLGRRLAERGIIVACIDYRNFPQGTIGDMVEDASQGIAFVCKNITSYGGDPSRIYLVGQSAGAHIAACALLNQAIRESGEGDTSSWSVSQLKAYFGISGGYNLLNLVDHFHRRGLYRSIFLSIMEGE 377          
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: A0A151T0A6_CAJCA (Putative arylformamidase n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T0A6_CAJCA)

HSP 1 Score: 199 bits (506), Expect = 5.460e-59
Identity = 96/210 (45.71%), Postives = 131/210 (62.38%), Query Frame = 1
Query:   13 GPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIARIFQTE 642
            G  W+  LL L  +A LL P +L VA +Y  S  +KR++ YG + RN  D+Y P  A   +  PVL+F  GGAWIIGYKAWG+L    L + GI+    DYRNFPQG +  M++D S  I++   NI  YGGDP+R+YL GQSAGAH+ + ALL+Q   E+ +   + W +  I  + G+SG Y+LL + DHFH RGL+R +   I + E
Sbjct:   59 GYRWITQLLALGCYALLLTPGFLQVAYYYFLSNKVKRSIVYGEQPRNRLDLYLP--ADVSEPKPVLIFVTGGAWIIGYKAWGSLLGLQLAERGIIVACIDYRNFPQGTISDMVNDTSQGISFVISNIANYGGDPNRIYLMGQSAGAHISSCALLEQATRESGKVDSVSWSISQIKAYFGLSGGYNLLDLVDHFHNRGLYRSIFLSIMEGE 266          
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: A0A8J5T0G7_ZIZPA (Abhydrolase_3 domain-containing protein n=2 Tax=Oryzeae TaxID=147380 RepID=A0A8J5T0G7_ZIZPA)

HSP 1 Score: 197 bits (502), Expect = 5.660e-59
Identity = 97/211 (45.97%), Postives = 127/211 (60.19%), Query Frame = 1
Query:   13 GPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIARIFQTED 645
            G  W+   L L  +  LL P ++ V  +Y  S  ++R+V YG + RN  D+Y P    G K  PV+ F  GGAWIIGYK WGAL    L + GI+    DYRNFPQG +G M++D S  IA+   NI  YGGDP+R+YL GQSAGAH+ A  LL Q + E  E     W V  +  + GISG Y+LL++ DHFHRRGL+R +   I + E+
Sbjct:   86 GYRWIRQFLALCCYTLLLMPGFIQVVYYYFFSSQVRRSVVYGEQPRNRLDLYIPTENTGLK--PVVAFVTGGAWIIGYKGWGALLGRRLAERGILVACIDYRNFPQGTIGDMVEDASQGIAFVCNNIASYGGDPERIYLVGQSAGAHIAACTLLNQAIKECGEGDASTWSVAQLKAYFGISGGYNLLNLVDHFHRRGLYRSIFLSIMEGEE 294          
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Match: A0A1W0VUS0_SORBI (Abhydrolase_3 domain-containing protein n=9 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1W0VUS0_SORBI)

HSP 1 Score: 202 bits (515), Expect = 6.000e-59
Identity = 99/211 (46.92%), Postives = 127/211 (60.19%), Query Frame = 1
Query:   13 GPMWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIYYPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYRNFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMALLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREVIARIFQTED 645
            G  W+   L L  +  LL P ++ V  +Y  S  + R+V YG + RN  D+Y P    G K  PV+ F  GGAWIIGYK WGAL    L + GI+    DYRNFPQG +G M++D S  IA+  KNI  YGGDP R+YL GQSAGAH+ A ALL Q + E  E     W V  +  + GISG Y+LL++ DHFHRRGL+R +   I + E+
Sbjct:  178 GYRWIRQFLALCCYTLLLMPGFIQVVYYYFFSSQVHRSVVYGDQPRNRLDLYIPTSTTGLK--PVVAFVTGGAWIIGYKGWGALLGRRLAERGIIVACIDYRNFPQGTIGDMVEDASQGIAFVCKNIASYGGDPSRIYLVGQSAGAHIAACALLNQAIRECGEEDTSSWSVSQLKAYFGISGGYNLLNLVDHFHRRGLYRSIFLSIMEGEE 386          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80129.18780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IBS3_9EUKA1.900e-9060.85Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
B8A2I7_MAIZE7.660e-6147.80Abhydrolase_3 domain-containing protein n=2 Tax=Ze... [more]
A0A5J9T891_9POAL8.840e-6045.97Abhydrolase_3 domain-containing protein (Fragment)... [more]
IMCL2_ORYSJ1.850e-5945.50Probable isoprenylcysteine alpha-carbonyl methyles... [more]
A0A835FS13_9POAL2.710e-5947.39Abhydrolase_3 domain-containing protein n=3 Tax=Pa... [more]
A0A804PCZ9_MAIZE3.080e-5947.14Abhydrolase_3 domain-containing protein n=2 Tax=Ze... [more]
A0A1D6GVU0_MAIZE3.430e-5947.14Carboxylesterase-like protein n=6 Tax=Andropogonea... [more]
A0A151T0A6_CAJCA5.460e-5945.71Putative arylformamidase n=1 Tax=Cajanus cajan Tax... [more]
A0A8J5T0G7_ZIZPA5.660e-5945.97Abhydrolase_3 domain-containing protein n=2 Tax=Or... [more]
A0A1W0VUS0_SORBI6.000e-5946.92Abhydrolase_3 domain-containing protein n=9 Tax=So... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80129contigM-pyrifera_M_contig80129:14..851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score199.9
Seed ortholog evalue1.2e-48
Seed eggNOG ortholog4558.Sb10g029410.1
KEGG rclassRC00460,RC00461
KEGG koko:K15889
KEGG ReactionR09846
KEGG Pathwayko00900,ko01120,ko01130,map00900,map01120,map01130
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0008150,GO:0008152,GO:0009056,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010296,GO:0012505,GO:0016020,GO:0016787,GO:0016788,GO:0031090,GO:0031984,GO:0033993,GO:0042175,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051723,GO:0052689,GO:0097305,GO:0098588,GO:0098791,GO:0098827,GO:0140096,GO:1901700
EggNOG free text desc.Carboxylesterase family
EggNOG OGs37HFQ@33090,3G82E@35493,3IQ5Z@38820,3KQ5Q@4447,COG2272@1,KOG1516@2759
COG Functional cat.I
BiGG ReactioniRC1080.CRv4_Au5_s2_g9183_t1
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size645
Cds size627
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80129.18780.1prot_M-pyrifera_M_contig80129.18780.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80129 14..833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.5735874-CDS-M-pyrifera_M_contig80129:13..1601622816706.5735874-CDS-M-pyrifera_M_contig80129:13..160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80129 14..160 -
1692278131.66829-CDS-M-pyrifera_M_contig80129:13..1601692278131.66829-CDS-M-pyrifera_M_contig80129:13..160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80129 14..160 -
1622816706.5899887-CDS-M-pyrifera_M_contig80129:223..3911622816706.5899887-CDS-M-pyrifera_M_contig80129:223..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80129 224..391 -
1692278131.6901782-CDS-M-pyrifera_M_contig80129:223..3911692278131.6901782-CDS-M-pyrifera_M_contig80129:223..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80129 224..391 -
1622816706.6033032-CDS-M-pyrifera_M_contig80129:442..5311622816706.6033032-CDS-M-pyrifera_M_contig80129:442..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80129 443..531 -
1692278131.7047765-CDS-M-pyrifera_M_contig80129:442..5311692278131.7047765-CDS-M-pyrifera_M_contig80129:442..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80129 443..531 -
1622816706.6158404-CDS-M-pyrifera_M_contig80129:610..8331622816706.6158404-CDS-M-pyrifera_M_contig80129:610..833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80129 611..833 -
1692278131.7171361-CDS-M-pyrifera_M_contig80129:610..8331692278131.7171361-CDS-M-pyrifera_M_contig80129:610..833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80129 611..833 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.6288-UTR-M-pyrifera_M_contig80129:833..8511622816706.6288-UTR-M-pyrifera_M_contig80129:833..851Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80129 834..851 -
1692278131.730352-UTR-M-pyrifera_M_contig80129:833..8511692278131.730352-UTR-M-pyrifera_M_contig80129:833..851Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80129 834..851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80129.18780.1

>prot_M-pyrifera_M_contig80129.18780.1 ID=prot_M-pyrifera_M_contig80129.18780.1|Name=mRNA_M-pyrifera_M_contig80129.18780.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp
MWMWMLLRLLIFAALLAPAWLHVAVFYLTSENIKRNVRYGVEARNFQDIY
YPDMALGGKKAPVLVFFCGGAWIIGYKAWGALFAHTLCKMGIVCVVPDYR
NFPQGDVGAMLDDVSSAIAWTKKNIQKYGGDPDRVYLAGQSAGAHLGAMA
LLQQLMTENAERSDLQWRVEDIAGFIGISGPYDLLSMQDHFHRRGLHREV
IARIFQTED
back to top

mRNA from alignment at M-pyrifera_M_contig80129:14..851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80129.18780.1 ID=mRNA_M-pyrifera_M_contig80129.18780.1|Name=mRNA_M-pyrifera_M_contig80129.18780.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=838bp|location=Sequence derived from alignment at M-pyrifera_M_contig80129:14..851- (Macrocystis pyrifera P11B4 male)
TTCGTGCTGACTGGTCCAATGTGGATGTGGATGTTGCTGCGGCTCCTCAT CTTCGCTGCGCTTCTGGCGCCTGCCTGGCTGCATGTGGCTGTGTTCTACC TCACCTCAGAGAACATCAAGAGGAATGTCAGATATGGAGTGGAGGCGAGG AACTTCCAGGACATCTACTACCCAGACATGGCACTGGGCGGCAAGAAGGC TCCGGTCTTGGTCTTCTTCTGTGGTGGAGCGTGGATCATCGGTGCGTCGT GGCGGTTGTTGCTCTGCTGATGCCCTGTTTGAAGTGAGCACCTAGTGCAG CGGCTGACGTTGCTGTGCAGGGTACAAAGCATGGGGGGCGCTCTTCGCGC ATACCCTGTGCAAAATGGGAATTGTGTGCGTTGTTCCAGACTACAGAAAC TTCCCTCAGGTATGTGGTGACCTTCAAGTGCCTGGGGGTGGCTGTTGACG TGGTGTGCAGGGGGACGTGGGTGCAATGCTGGATGACGTCTCCAGCGCCA TCGCTTGGACGAAGAAGAACATCCAGAAGTATGGGGGCGACCCAGACCGA GTGTACCTTGCTGGACAGAGCGCAGGAGCCCACCTTGGCGCCATGGCACT TCTCCAACAACTCATGACGGAGAATGCCGTGTGTCACCACTGCGAGAGCG ACGTTGAGCAGCAGAGGTGCGAAGATGCTCATGAGTGGAAGGAGCGAAGC GACCTGCAGTGGCGCGTGGAAGACATTGCTGGATTCATCGGTATCAGTGG CCCTTACGACCTCCTCAGTATGCAGGATCACTTCCACAGGCGTGGCCTGC ATCGGGAGGTGATCGCCCGCATCTTTCAGACAGAAGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80129:14..851-

>mRNA_M-pyrifera_M_contig80129.18780.1 ID=mRNA_M-pyrifera_M_contig80129.18780.1|Name=mRNA_M-pyrifera_M_contig80129.18780.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig80129:14..851- (Macrocystis pyrifera P11B4 male)
ATGTGGATGTGGATGTTGCTGCGGCTCCTCATCTTCGCTGCGCTTCTGGC
GCCTGCCTGGCTGCATGTGGCTGTGTTCTACCTCACCTCAGAGAACATCA
AGAGGAATGTCAGATATGGAGTGGAGGCGAGGAACTTCCAGGACATCTAC
TACCCAGACATGGCACTGGGCGGCAAGAAGGCTCCGGTCTTGGTCTTCTT
CTGTGGTGGAGCGTGGATCATCGATGTGGATGTGGATGTTGCTGCGGCTC
CTCATCTTCGCTGCGCTTCTGGCGCCTGCCTGGCTGCATGTGGCTGTGTT
CTACCTCACCTCAGAGAACATCAAGAGGAATGTCAGATATGGAGTGGAGG
CGAGGAACTTCCAGGACATCTACTACCCAGACATGGCACTGGGCGGCAAG
AAGGCTCCGGTCTTGGTCTTCTTCTGTGGTGGAGCGTGGATCATCGGGTA
CAAAGCATGGGGGGCGCTCTTCGCGCATACCCTGTGCAAAATGGGAATTG
TGTGCGTTGTTCCAGACTACAGAAACTTCCCTCAGGGTACAAAGCATGGG
GGGCGCTCTTCGCGCATACCCTGTGCAAAATGGGAATTGTGTGCGTTGTT
CCAGACTACAGAAACTTCCCTCAGGGGGACGTGGGTGCAATGCTGGATGA
CGTCTCCAGCGCCATCGCTTGGACGAAGAAGAACATCCAGAAGTATGGGG
GCGACCCAGACCGAGTGTACCTTGCTGGACAGAGCGCAGGAGCCCACCTT
GGCGCCATGGCACTTCTCCAACAACTCATGACGGAGAATGCCGGGGACGT
GGGTGCAATGCTGGATGACGTCTCCAGCGCCATCGCTTGGACGAAGAAGA
ACATCCAGAAGTATGGGGGCGACCCAGACCGAGTGTACCTTGCTGGACAG
AGCGCAGGAGCCCACCTTGGCGCCATGGCACTTCTCCAACAACTCATGAC
GGAGAATGCCGAGCGAAGCGACCTGCAGTGGCGCGTGGAAGACATTGCTG
GATTCATCGGTATCAGTGGCCCTTACGACCTCCTCAGTATGCAGGATCAC
TTCCACAGGCGTGGCCTGCATCGGGAGGTGATCGCCCGCATCTTTCAGAC
AGAAGACGAGCGAAGCGACCTGCAGTGGCGCGTGGAAGACATTGCTGGAT
TCATCGGTATCAGTGGCCCTTACGACCTCCTCAGTATGCAGGATCACTTC
CACAGGCGTGGCCTGCATCGGGAGGTGATCGCCCGCATCTTTCAGACAGA
AGAC
back to top