mRNA_M-pyrifera_M_contig80073.18775.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80073.18775.1
Unique NamemRNA_M-pyrifera_M_contig80073.18775.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80073.18775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80073contigM-pyrifera_M_contig80073:126..947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size822
Cds size822
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.2865033-CDS-M-pyrifera_M_contig80073:125..9471622816706.2865033-CDS-M-pyrifera_M_contig80073:125..947Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80073 126..947 +
1692278131.4732108-CDS-M-pyrifera_M_contig80073:125..9471692278131.4732108-CDS-M-pyrifera_M_contig80073:125..947Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80073 126..947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80073.18775.1prot_M-pyrifera_M_contig80073.18775.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80073 126..947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80073.18775.1

>prot_M-pyrifera_M_contig80073.18775.1 ID=prot_M-pyrifera_M_contig80073.18775.1|Name=mRNA_M-pyrifera_M_contig80073.18775.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=274bp
MEELRSSIAELQSSNMAIRDNAWAKIKYLATRFRVINARVIDLLDYQHIL
EAIAREATVASRVDKSLVLMSLQPYLRLPDPLLEVTNHNELGTWFWEWLQ
TDPLFLKLFTSNHLKRDEAATALIQDYLRQPGFSGSRLEEFTIGKSRLDE
ILASEPKTRIIFLGRPLLFGDSAAEWFAGERRFSLPERELTGRKDFDSNE
IDPKYHQIREQIGPDEFVTYVCEDDERTGMRTDYGIVQRFTVPVRGQVYV
VYVIAGTTRLGTYAAAQWATNSLI
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mRNA from alignment at M-pyrifera_M_contig80073:126..947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80073.18775.1 ID=mRNA_M-pyrifera_M_contig80073.18775.1|Name=mRNA_M-pyrifera_M_contig80073.18775.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig80073:126..947+ (Macrocystis pyrifera P11B4 male)
ATGGAAGAATTACGCAGCAGCATTGCAGAACTTCAGTCCAGCAACATGGC
AATTCGGGACAATGCTTGGGCCAAGATTAAATACCTTGCGACTCGATTCC
GAGTTATCAATGCGCGGGTCATTGACCTACTGGACTACCAACACATCCTT
GAGGCTATAGCACGGGAAGCCACCGTTGCGTCGCGAGTGGACAAAAGTCT
AGTGCTGATGTCGTTACAGCCGTACCTACGACTCCCGGATCCTCTCCTGG
AGGTCACCAACCACAACGAATTGGGAACCTGGTTCTGGGAATGGTTGCAA
ACCGACCCGTTGTTCCTGAAGCTTTTCACATCGAACCATTTGAAACGCGA
TGAAGCCGCCACGGCCTTGATTCAAGACTACTTGCGTCAACCTGGGTTCA
GCGGCTCGCGGCTCGAAGAATTCACCATCGGTAAGTCGCGGCTCGATGAG
ATACTGGCCAGCGAGCCGAAAACCCGGATCATATTCCTGGGCCGCCCGCT
GCTTTTCGGCGACAGTGCCGCAGAATGGTTTGCTGGAGAAAGACGGTTTT
CTCTTCCGGAGAGAGAACTGACCGGCCGGAAGGACTTCGACTCGAACGAG
ATTGATCCCAAATATCATCAGATCCGTGAGCAGATCGGGCCTGACGAATT
TGTGACGTATGTGTGCGAAGACGATGAACGCACAGGCATGCGGACCGATT
ACGGTATCGTGCAACGATTTACCGTTCCTGTCCGAGGTCAGGTTTACGTC
GTTTATGTGATCGCTGGTACTACACGGCTGGGAACTTACGCGGCGGCGCA
GTGGGCAACCAACTCATTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80073:126..947+

>mRNA_M-pyrifera_M_contig80073.18775.1 ID=mRNA_M-pyrifera_M_contig80073.18775.1|Name=mRNA_M-pyrifera_M_contig80073.18775.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1644bp|location=Sequence derived from alignment at M-pyrifera_M_contig80073:126..947+ (Macrocystis pyrifera P11B4 male)
ATGGAAGAATTACGCAGCAGCATTGCAGAACTTCAGTCCAGCAACATGGC
AATTCGGGACAATGCTTGGGCCAAGATTAAATACCTTGCGACTCGATTCC
GAGTTATCAATGCGCGGGTCATTGACCTACTGGACTACCAACACATCCTT
GAGGCTATAGCACGGGAAGCCACCGTTGCGTCGCGAGTGGACAAAAGTCT
AGTGCTGATGTCGTTACAGCCGTACCTACGACTCCCGGATCCTCTCCTGG
AGGTCACCAACCACAACGAATTGGGAACCTGGTTCTGGGAATGGTTGCAA
ACCGACCCGTTGTTCCTGAAGCTTTTCACATCGAACCATTTGAAACGCGA
TGAAGCCGCCACGGCCTTGATTCAAGACTACTTGCGTCAACCTGGGTTCA
GCGGCTCGCGGCTCGAAGAATTCACCATCGGTAAGTCGCGGCTCGATGAG
ATACTGGCCAGCGAGCCGAAAACCCGGATCATATTCCTGGGCCGCCCGCT
GCTTTTCGGCGACAGTGCCGCAGAATGGTTTGCTGGAGAAAGACGGTTTT
CTCTTCCGGAGAGAGAACTGACCGGCCGGAAGGACTTCGACTCGAACGAG
ATTGATCCCAAATATCATCAGATCCGTGAGCAGATCGGGCCTGACGAATT
TGTGACGTATGTGTGCGAAGACGATGAACGCACAGGCATGCGGACCGATT
ACGGTATCGTGCAACGATTTACCGTTCCTGTCCGAGGTCAGGTTTACGTC
GTTTATGTGATCGCTGGTACTACACGGCTGGGAACTTACGCGGCGGCGCA
GTGGGCAACCAACTCATTGATCATGGAAGAATTACGCAGCAGCATTGCAG
AACTTCAGTCCAGCAACATGGCAATTCGGGACAATGCTTGGGCCAAGATT
AAATACCTTGCGACTCGATTCCGAGTTATCAATGCGCGGGTCATTGACCT
ACTGGACTACCAACACATCCTTGAGGCTATAGCACGGGAAGCCACCGTTG
CGTCGCGAGTGGACAAAAGTCTAGTGCTGATGTCGTTACAGCCGTACCTA
CGACTCCCGGATCCTCTCCTGGAGGTCACCAACCACAACGAATTGGGAAC
CTGGTTCTGGGAATGGTTGCAAACCGACCCGTTGTTCCTGAAGCTTTTCA
CATCGAACCATTTGAAACGCGATGAAGCCGCCACGGCCTTGATTCAAGAC
TACTTGCGTCAACCTGGGTTCAGCGGCTCGCGGCTCGAAGAATTCACCAT
CGGTAAGTCGCGGCTCGATGAGATACTGGCCAGCGAGCCGAAAACCCGGA
TCATATTCCTGGGCCGCCCGCTGCTTTTCGGCGACAGTGCCGCAGAATGG
TTTGCTGGAGAAAGACGGTTTTCTCTTCCGGAGAGAGAACTGACCGGCCG
GAAGGACTTCGACTCGAACGAGATTGATCCCAAATATCATCAGATCCGTG
AGCAGATCGGGCCTGACGAATTTGTGACGTATGTGTGCGAAGACGATGAA
CGCACAGGCATGCGGACCGATTACGGTATCGTGCAACGATTTACCGTTCC
TGTCCGAGGTCAGGTTTACGTCGTTTATGTGATCGCTGGTACTACACGGC
TGGGAACTTACGCGGCGGCGCAGTGGGCAACCAACTCATTGATC
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