mRNA_M-pyrifera_M_contig80055.18773.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80055.18773.1
Unique NamemRNA_M-pyrifera_M_contig80055.18773.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.030e-29
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    4 QVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSIPEEDI 189
            QVLHQILSGFVWEEEALKRAKQSFLQSHETL+KSLEGRSTEMLMERMSG DSRFMSIP+EDI
Sbjct:  714 QVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDI 775
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.030e-29
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    4 QVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSIPEEDI 189
            QVLHQILSGFVWEEEALKRAKQSFLQSHETL+KSLEGRSTEMLMERMSG DSRFMSIP+EDI
Sbjct:  967 QVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDI 1028
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.350e-18
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 LQVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSIPEEDI 189
            LQV++QIL+G+VWEE+AL RAKQ+F Q HE  IKSLEG STE LM +MS  DSRF+S+P E +
Sbjct:  687 LQVVNQILTGYVWEEDALNRAKQAFYQLHEASIKSLEGSSTEQLMAQMSSGDSRFLSVPHEAV 749
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: A0A7S3XQN3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQN3_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.110e-14
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    7 VLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSI 174
            V+HQIL+GFVWEE+AL RAK  F Q+H+TL KSLEG +TE LM R++G D  F+S+
Sbjct:    1 VVHQILTGFVWEEDALGRAKAGFQQTHDTLTKSLEGATTEALMARVAGGDPAFLSV 56
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: A0A7S4HUK7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUK7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.470e-13
Identity = 33/58 (56.90%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 LQVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSI 174
            +Q+L +IL  F WEE+AL R+KQSF  +HE+L K+LEG++TE++ME M+G D RF+SI
Sbjct:  822 MQILREILVDFHWEEDALGRSKQSFRSAHESLQKNLEGKTTEVIMEGMTGNDKRFLSI 879
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: A0A7S2EV96_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV96_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.100e-13
Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 LQVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSI 174
            LQV+ ++++GF WEE+AL R+KQS+  +HE+L KSLEG+STEM+M  M+  D R++SI
Sbjct:  575 LQVVREVIAGFHWEEDALGRSKQSYRSAHESLNKSLEGKSTEMIMAAMTDNDDRYLSI 632
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: A0A7S0CAA1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAA1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.140e-13
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 LQVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSI 174
            +Q+L +I+ GF WEE+AL R+K SF  +HE L K+LEG +TE++ME M+G D RF+SI
Sbjct:   91 MQILREIIIGFKWEEDALGRSKSSFRSAHEGLQKNLEGMTTELIMETMTGQDERFLSI 148
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: A0A7S1HIP4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HIP4_HEMAN)

HSP 1 Score: 70.5 bits (171), Expect = 1.110e-12
Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 QVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSIPEEDI 189
            QV+H +++ F WEE+AL+RAKQ+F+Q+HE + KSLE  + E L++ M G D+R++SIP E +
Sbjct:  281 QVVHGLIADFKWEEDALERAKQAFVQTHEQVSKSLEAAAAEHLLDGMCGGDARYLSIPGEKV 342
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: A0A7S1HIF8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HIF8_HEMAN)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-12
Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 QVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSIPEEDI 189
            QV+H +++ F WEE+AL+RAKQ+F+Q+HE + KSLE  + E L++ M G D+R++SIP E +
Sbjct:  742 QVVHGLIADFKWEEDALERAKQAFVQTHEQVSKSLEAAAAEHLLDGMCGGDARYLSIPGEKV 803
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BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Match: A0A6U0SKE1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0SKE1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-12
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 LQVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSGADSRFMSI 174
            +Q++ +IL GF WEE+AL R KQS+  +HE++ KSLEG+STE +ME M+  D RF+SI
Sbjct:  563 MQIVREILIGFHWEEDALGRGKQSYRTAHESMQKSLEGKSTEKIMESMTSQDDRFLSI 620
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80055.18773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G0R1_ECTSI1.030e-2995.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY0_9PHAE1.030e-2995.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C760_9STRA4.350e-1865.08Stromal processing peptidase n=1 Tax=Tribonema min... [more]
A0A7S3XQN3_HETAK1.110e-1462.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4HUK7_9STRA4.470e-1356.90Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2EV96_9STRA6.100e-1355.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0CAA1_9STRA8.140e-1355.17Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1HIP4_HEMAN1.110e-1250.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1HIF8_HEMAN1.140e-1250.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6U0SKE1_9STRA1.140e-1255.17Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80055contigM-pyrifera_M_contig80055:272..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue4.6e-25
Seed eggNOG ortholog2880.D7G0R1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.1975708-CDS-M-pyrifera_M_contig80055:271..4601622816706.1975708-CDS-M-pyrifera_M_contig80055:271..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80055 272..460 -
1692278131.4197278-CDS-M-pyrifera_M_contig80055:271..4601692278131.4197278-CDS-M-pyrifera_M_contig80055:271..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80055 272..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80055.18773.1prot_M-pyrifera_M_contig80055.18773.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80055 272..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80055.18773.1

>prot_M-pyrifera_M_contig80055.18773.1 ID=prot_M-pyrifera_M_contig80055.18773.1|Name=mRNA_M-pyrifera_M_contig80055.18773.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
LQVLHQILSGFVWEEEALKRAKQSFLQSHETLIKSLEGRSTEMLMERMSG
ADSRFMSIPEEDI
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mRNA from alignment at M-pyrifera_M_contig80055:272..460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80055.18773.1 ID=mRNA_M-pyrifera_M_contig80055.18773.1|Name=mRNA_M-pyrifera_M_contig80055.18773.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig80055:272..460- (Macrocystis pyrifera P11B4 male)
CTCCAGGTCCTGCACCAGATCTTGTCCGGGTTTGTATGGGAGGAGGAGGC
TTTGAAGAGGGCCAAGCAGTCCTTCCTCCAGTCGCACGAGACGCTCATCA
AGAGCCTGGAGGGACGCTCTACAGAGATGCTTATGGAGCGCATGTCCGGC
GCCGACAGCCGTTTCATGTCCATCCCCGAGGAAGACATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80055:272..460-

>mRNA_M-pyrifera_M_contig80055.18773.1 ID=mRNA_M-pyrifera_M_contig80055.18773.1|Name=mRNA_M-pyrifera_M_contig80055.18773.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig80055:272..460- (Macrocystis pyrifera P11B4 male)
CTCCAGGTCCTGCACCAGATCTTGTCCGGGTTTGTATGGGAGGAGGAGGC
TTTGAAGAGGGCCAAGCAGTCCTTCCTCCAGTCGCACGAGACGCTCATCA
AGAGCCTGGAGGGACGCTCTACAGAGATGCTTATGGAGCGCATGTCCGGC
GCCGACAGCCGTTTCATGTCCATCCCCGAGGAAGACATCCTCCAGGTCCT
GCACCAGATCTTGTCCGGGTTTGTATGGGAGGAGGAGGCTTTGAAGAGGG
CCAAGCAGTCCTTCCTCCAGTCGCACGAGACGCTCATCAAGAGCCTGGAG
GGACGCTCTACAGAGATGCTTATGGAGCGCATGTCCGGCGCCGACAGCCG
TTTCATGTCCATCCCCGAGGAAGACATC
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