mRNA_M-pyrifera_M_contig80035.18772.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80035.18772.1
Unique NamemRNA_M-pyrifera_M_contig80035.18772.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80035.18772.1 vs. uniprot
Match: A0A7S3B2N5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B2N5_9EUKA)

HSP 1 Score: 171 bits (432), Expect = 1.420e-49
Identity = 106/206 (51.46%), Postives = 127/206 (61.65%), Query Frame = 1
Query:   52 GCPFRLQGGDVVFLEDTSTFLYSVIVYWGGN--------GEYSTSVVAFSSMDGLN--WKYLSTIADASSYPSSEEGPNENTLAMLTDG-TVICVIRLDAGDGPETHPYKPYYITKSSDNGKTWSTLVSMKT-LGSARPKLLQLAPTGPLLLSGGRARFRNTSDVLLWVNDAGDAGNFVEYSISYHHNLLAQSEWL-YTPNVNSTT 630
            GCPFR  G   V L D S  + S+IVYWGG            +TSVVAF S DG+   W+Y  TI DA+S PSSEEGPNEN LA+L DG T++ VIRLDAGDGP T PYKPY  + S D G+TWS  VSM   +G ARP+LL L   G ++LSGGR    N  DVLLW N  G    +  YS+SY HN L  +  L +   VN++T
Sbjct:    8 GCPFRTGGRGSVRLPDGSLVM-SIIVYWGGAHANPDPKLAPKATSVVAFRSTDGVGLVWEYAGTILDAASAPSSEEGPNENDLALLADGKTILSVIRLDAGDGPVTRPYKPYVQSLSDDGGRTWSAPVSMGPGVGCARPRLLSLG-MGGVVLSGGRLSPTNR-DVLLWHNADGTGRTWKSYSLSYWHNRLEPNASLHFDAKVNAST 210          
BLAST of mRNA_M-pyrifera_M_contig80035.18772.1 vs. uniprot
Match: A9V3Q9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V3Q9_MONBE)

HSP 1 Score: 113 bits (282), Expect = 3.610e-27
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = 1
Query:    1 LEWNNVPKPITCKSNFGGCPFRLQGGDVVFLEDTSTFLYSVIVYWGGN--GEYSTSVVAFSSMDG-LNWKYLSTIADASSYPSSEEGPNENTLAMLTDGTVICVIRLDAGDGPETHPYKPYYITKSSDNG 381
            +++  +P P++C      CPFR  GG       + T L + IV WGGN     +TS+V + S DG   W+YL  +A+AS Y  SEEGPNE+ L + ++GT++ ++RLDAGDGP THP+  YY T S D G
Sbjct:  124 IDFQGLPIPVSCHKF--ACPFRF-GGTASATLPSGTMLQTAIVAWGGNPRSPEATSIVIYKSTDGGFAWQYLGVVANASDYSFSEEGPNEHDLVLTSNGTLVMIVRLDAGDGPITHPFLNYYRTISVDQG 250          
BLAST of mRNA_M-pyrifera_M_contig80035.18772.1 vs. uniprot
Match: A0A2D6N6B4_9CHLR (Sialidase domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2D6N6B4_9CHLR)

HSP 1 Score: 78.6 bits (192), Expect = 1.660e-13
Identity = 56/183 (30.60%), Postives = 86/183 (46.99%), Query Frame = 1
Query:   46 FGGCPFRLQGGDVVFLEDTSTFLYSVIVYWGGNGEYSTSVVAFSSMDGLNWKYLSTIADASSYPSSEEGPNENTLAMLTDGTVICVIRLDAGDGPETHPYKPYYITKSSDNGKTWST-LVSMKTLGSARPKLLQLAPTGPLLLSGGRARFRNTSDVLLWVNDAGDAGNFVEYSISYHHNLLAQ 591
            F G P  L+ G +V      T ++     W     +  ++   S   G  W+YL T+A  + +  S+ G  E  LA+L DGT++C+ R++   G +  P   Y    S+D G+TWST  +    +G   P+LL+L+  G L L+GGR  F       +W    G   N+ E  +  HHN   Q
Sbjct:  164 FWGHPVTLKDGGLV------TGMFGA---WADAPTFRHAITVRSDDGGCTWRYLGTVAAPAQFDCSQGGCAEPALALLADGTLLCIFRIN---GAQPVPDPSYGRAVSTDGGQTWSTPQLLAPAVGRVDPQLLRLS-NGVLALTGGRPGFS------VWFAIDGAGKNWQEVDLVAHHNGQGQ 327          
BLAST of mRNA_M-pyrifera_M_contig80035.18772.1 vs. uniprot
Match: UPI0017475B62 (glycoside hydrolase n=1 Tax=Microbacterium helvum TaxID=2773713 RepID=UPI0017475B62)

HSP 1 Score: 58.5 bits (140), Expect = 1.840e-6
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 1
Query:   91 LEDTSTFLY-SVIVYWGGNGEYSTSVVAFSSMDGLNWKYLSTIADASSYPSSEEGPNENTLAMLTDGTVICVIRLDAGDGPETHPYKPYYITKSSDNGKTWSTLVSMKTLGSARPKL------LQLAPTGPLLLSGGR 483
            LED    LY S   ++  + +Y   +V  S   G+NW    T+    +      GP E  L  L DG+++ V+R+    GP+     P  +++S DNG TW+ L  +K +G ++  L      L+L PTG LLL  GR
Sbjct:  699 LEDPDGTLYMSAYGFYAVDTKYR-QIVLVSEDGGVNWSVRGTVGVFDASIPDTSGPCEGALERLADGSLLMVMRM----GPKV----PMMMSRSFDNGATWTPLEKVK-VGPSQQDLYAIQPTLELLPTGELLLMVGR 826          
BLAST of mRNA_M-pyrifera_M_contig80035.18772.1 vs. uniprot
Match: UPI00114D656B (exo-alpha-sialidase n=1 Tax=Oryzihumus leptocrescens TaxID=297536 RepID=UPI00114D656B)

HSP 1 Score: 57.0 bits (136), Expect = 5.380e-6
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  160 SVVAFSSMDGLNWKYLSTIADASSYPSSEEGPNENTLAMLTDGTVICVIRLDAGDGPE----THPYKPYYITKSSDNGKTWSTLVSMKTLG-------SARPKLLQLAPTGPLLLSGGR 483
            +++A S   GLNW+  + IAD  +   S EG +E T+   ++G ++ VIR  A   P     +       IT+S+++G TWST V +   G       SA P+L Q+ PTG ++LS GR
Sbjct:   63 TLLARSVDGGLNWRISALIADEGT---SNEGRSEPTMVRASNGDLVAVIRQAAPVNPAVCAGSRQGASLVITRSTNDGATWSTPVPLPGAGLSPDNASSADPQL-QMMPTGAMVLSYGR 177          
BLAST of mRNA_M-pyrifera_M_contig80035.18772.1 vs. uniprot
Match: A0A542ZLF1_9MICO (BNR repeat protein n=1 Tax=Oryzihumus leptocrescens TaxID=297536 RepID=A0A542ZLF1_9MICO)

HSP 1 Score: 57.0 bits (136), Expect = 5.810e-6
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  160 SVVAFSSMDGLNWKYLSTIADASSYPSSEEGPNENTLAMLTDGTVICVIRLDAGDGPE----THPYKPYYITKSSDNGKTWSTLVSMKTLG-------SARPKLLQLAPTGPLLLSGGR 483
            +++A S   GLNW+  + IAD  +   S EG +E T+   ++G ++ VIR  A   P     +       IT+S+++G TWST V +   G       SA P+L Q+ PTG ++LS GR
Sbjct:  274 TLLARSVDGGLNWRISALIADEGT---SNEGRSEPTMVRASNGDLVAVIRQAAPVNPAVCAGSRQGASLVITRSTNDGATWSTPVPLPGAGLSPDNASSADPQL-QMMPTGAMVLSYGR 388          
BLAST of mRNA_M-pyrifera_M_contig80035.18772.1 vs. uniprot
Match: A0A2E5VSY6_9PLAN (Sialidase domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E5VSY6_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 4.450e-5
Identity = 43/156 (27.56%), Postives = 69/156 (44.23%), Query Frame = 1
Query:  160 SVVAFSSMDGLNWKYLSTIADASSYPSSEEGPN---------ENTLAMLTDGTVICVIRLDAGDGPETHPYKPYYITKSSDNGKTWSTLVSMKTLGSARPKLLQLAPT------GPLLLSGGRARFRNTSDVLLWVNDAGDAGNFVEYSISYHHNL 582
            +++  SS  G  W+Y +T+A    Y + +  P+         E T+AM+++G +ICV+R      P    YKP  +  S D GKTW+  V+        P L+ ++PT      G L    GR  F     +        D G+  +  IS+ H +
Sbjct:  220 TIICVSSDQGHKWRYYATVA----YDTQDLNPDLPGQYLGYCEPTIAMMSNGQMICVMRTQYAHTPAE--YKPMAMCWSDDQGKTWTKPVA------THPHLMNISPTLATLDNGVLACQYGRPGFHVVFSL--------DHGHTWQDRISFSHQI 355          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80035.18772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S3B2N5_9EUKA1.420e-4951.46Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A9V3Q9_MONBE3.610e-2743.85Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A2D6N6B4_9CHLR1.660e-1330.60Sialidase domain-containing protein n=1 Tax=Dehalo... [more]
UPI0017475B621.840e-632.61glycoside hydrolase n=1 Tax=Microbacterium helvum ... [more]
UPI00114D656B5.380e-635.29exo-alpha-sialidase n=1 Tax=Oryzihumus leptocresce... [more]
A0A542ZLF1_9MICO5.810e-635.29BNR repeat protein n=1 Tax=Oryzihumus leptocrescen... [more]
A0A2E5VSY6_9PLAN4.450e-527.56Sialidase domain-containing protein n=1 Tax=Planct... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80035contigM-pyrifera_M_contig80035:312..950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.1639533-CDS-M-pyrifera_M_contig80035:311..9501622816706.1639533-CDS-M-pyrifera_M_contig80035:311..950Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80035 312..950 +
1692278131.4037485-CDS-M-pyrifera_M_contig80035:311..9501692278131.4037485-CDS-M-pyrifera_M_contig80035:311..950Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80035 312..950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80035.18772.1prot_M-pyrifera_M_contig80035.18772.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80035 312..950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80035.18772.1

>prot_M-pyrifera_M_contig80035.18772.1 ID=prot_M-pyrifera_M_contig80035.18772.1|Name=mRNA_M-pyrifera_M_contig80035.18772.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=213bp
LEWNNVPKPITCKSNFGGCPFRLQGGDVVFLEDTSTFLYSVIVYWGGNGE
YSTSVVAFSSMDGLNWKYLSTIADASSYPSSEEGPNENTLAMLTDGTVIC
VIRLDAGDGPETHPYKPYYITKSSDNGKTWSTLVSMKTLGSARPKLLQLA
PTGPLLLSGGRARFRNTSDVLLWVNDAGDAGNFVEYSISYHHNLLAQSEW
LYTPNVNSTTYSP
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mRNA from alignment at M-pyrifera_M_contig80035:312..950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80035.18772.1 ID=mRNA_M-pyrifera_M_contig80035.18772.1|Name=mRNA_M-pyrifera_M_contig80035.18772.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=639bp|location=Sequence derived from alignment at M-pyrifera_M_contig80035:312..950+ (Macrocystis pyrifera P11B4 male)
TTGGAATGGAACAATGTCCCAAAACCAATCACCTGCAAGTCAAACTTTGG TGGATGTCCTTTCCGGTTGCAAGGAGGTGACGTTGTTTTCCTGGAGGATA CGTCAACGTTCTTGTACTCTGTGATAGTGTACTGGGGCGGTAATGGAGAA TACTCAACGTCTGTTGTTGCCTTCTCCTCAATGGATGGTTTGAATTGGAA ATACCTCTCCACAATTGCGGATGCCTCTTCCTACCCTTCTTCTGAGGAAG GACCGAACGAAAACACATTGGCAATGCTTACAGATGGGACAGTAATATGT GTTATTCGACTTGATGCTGGCGATGGTCCAGAAACTCATCCCTACAAACC ATACTACATCACCAAATCAAGTGACAACGGAAAGACGTGGTCAACCCTTG TGTCGATGAAGACGCTAGGGTCTGCACGTCCCAAACTCCTTCAGCTTGCT CCAACTGGCCCCTTGCTTCTAAGTGGTGGGCGTGCTCGTTTTCGAAACAC GAGTGATGTATTACTCTGGGTGAATGATGCAGGAGACGCGGGGAATTTTG TGGAGTACTCCATATCATACCATCACAATTTGTTGGCCCAGTCCGAGTGG CTATACACACCAAACGTCAATTCTACCACATATTCTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80035:312..950+

>mRNA_M-pyrifera_M_contig80035.18772.1 ID=mRNA_M-pyrifera_M_contig80035.18772.1|Name=mRNA_M-pyrifera_M_contig80035.18772.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1278bp|location=Sequence derived from alignment at M-pyrifera_M_contig80035:312..950+ (Macrocystis pyrifera P11B4 male)
TTGGAATGGAACAATGTCCCAAAACCAATCACCTGCAAGTCAAACTTTGG
TGGATGTCCTTTCCGGTTGCAAGGAGGTGACGTTGTTTTCCTGGAGGATA
CGTCAACGTTCTTGTACTCTGTGATAGTGTACTGGGGCGGTAATGGAGAA
TACTCAACGTCTGTTGTTGCCTTCTCCTCAATGGATGGTTTGAATTGGAA
ATACCTCTCCACAATTGCGGATGCCTCTTCCTACCCTTCTTCTGAGGAAG
GACCGAACGAAAACACATTGGCAATGCTTACAGATGGGACAGTAATATGT
GTTATTCGACTTGATGCTGGCGATGGTCCAGAAACTCATCCCTACAAACC
ATACTACATCACCAAATCAAGTGACAACGGAAAGACGTGGTCAACCCTTG
TGTCGATGAAGACGCTAGGGTCTGCACGTCCCAAACTCCTTCAGCTTGCT
CCAACTGGCCCCTTGCTTCTAAGTGGTGGGCGTGCTCGTTTTCGAAACAC
GAGTGATGTATTACTCTGGGTGAATGATGCAGGAGACGCGGGGAATTTTG
TGGAGTACTCCATATCATACCATCACAATTTGTTGGCCCAGTCCGAGTGG
CTATACACACCAAACGTCAATTCTACCACATATTCTCCTTTGGAATGGAA
CAATGTCCCAAAACCAATCACCTGCAAGTCAAACTTTGGTGGATGTCCTT
TCCGGTTGCAAGGAGGTGACGTTGTTTTCCTGGAGGATACGTCAACGTTC
TTGTACTCTGTGATAGTGTACTGGGGCGGTAATGGAGAATACTCAACGTC
TGTTGTTGCCTTCTCCTCAATGGATGGTTTGAATTGGAAATACCTCTCCA
CAATTGCGGATGCCTCTTCCTACCCTTCTTCTGAGGAAGGACCGAACGAA
AACACATTGGCAATGCTTACAGATGGGACAGTAATATGTGTTATTCGACT
TGATGCTGGCGATGGTCCAGAAACTCATCCCTACAAACCATACTACATCA
CCAAATCAAGTGACAACGGAAAGACGTGGTCAACCCTTGTGTCGATGAAG
ACGCTAGGGTCTGCACGTCCCAAACTCCTTCAGCTTGCTCCAACTGGCCC
CTTGCTTCTAAGTGGTGGGCGTGCTCGTTTTCGAAACACGAGTGATGTAT
TACTCTGGGTGAATGATGCAGGAGACGCGGGGAATTTTGTGGAGTACTCC
ATATCATACCATCACAATTTGTTGGCCCAGTCCGAGTGGCTATACACACC
AAACGTCAATTCTACCACATATTCTCCT
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