mRNA_M-pyrifera_M_contig8003.18769.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8003.18769.1
Unique NamemRNA_M-pyrifera_M_contig8003.18769.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8003.18769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8003contigM-pyrifera_M_contig8003:8632..8990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.0319443-CDS-M-pyrifera_M_contig8003:8631..89611622816706.0319443-CDS-M-pyrifera_M_contig8003:8631..8961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8003 8632..8961 +
1692278131.3186913-CDS-M-pyrifera_M_contig8003:8631..89611692278131.3186913-CDS-M-pyrifera_M_contig8003:8631..8961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8003 8632..8961 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.0451229-UTR-M-pyrifera_M_contig8003:8961..89901622816706.0451229-UTR-M-pyrifera_M_contig8003:8961..8990Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8003 8962..8990 +
1692278131.3385985-UTR-M-pyrifera_M_contig8003:8961..89901692278131.3385985-UTR-M-pyrifera_M_contig8003:8961..8990Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8003 8962..8990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8003.18769.1prot_M-pyrifera_M_contig8003.18769.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8003 8632..8961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8003.18769.1

>prot_M-pyrifera_M_contig8003.18769.1 ID=prot_M-pyrifera_M_contig8003.18769.1|Name=mRNA_M-pyrifera_M_contig8003.18769.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
RGKKEEEETEALKIGAHPVYTFTTAFTKGPNIYASQTNVETPRVGGGRQP
RVESRTQNMHPSRGKPRGGNRSPVRLPRLLQNSPIFQLKKEEKDKKICVV
NKPIGLPRW*
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mRNA from alignment at M-pyrifera_M_contig8003:8632..8990+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8003.18769.1 ID=mRNA_M-pyrifera_M_contig8003.18769.1|Name=mRNA_M-pyrifera_M_contig8003.18769.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=359bp|location=Sequence derived from alignment at M-pyrifera_M_contig8003:8632..8990+ (Macrocystis pyrifera P11B4 male)
AGAGGAAAAAAAGAGGAAGAGGAAACGGAGGCGCTAAAAATCGGAGCGCA
TCCCGTATACACATTTACCACCGCCTTTACAAAGGGTCCGAATATCTACG
CCTCACAAACTAATGTGGAAACCCCTCGGGTGGGCGGTGGCCGCCAGCCA
CGGGTCGAATCCCGCACTCAAAACATGCATCCTTCGCGCGGAAAACCCCG
CGGCGGGAACCGGTCGCCAGTCCGGCTCCCCCGGCTCTTACAGAATTCGC
CCATCTTTCAACTCAAAAAAGAAGAAAAAGACAAGAAAATTTGTGTGGTG
AACAAACCGATCGGGCTGCCTCGGTGGTGATGCAAACCCTCCGAAAAGGG
AGTGGGTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8003:8632..8990+

>mRNA_M-pyrifera_M_contig8003.18769.1 ID=mRNA_M-pyrifera_M_contig8003.18769.1|Name=mRNA_M-pyrifera_M_contig8003.18769.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig8003:8632..8990+ (Macrocystis pyrifera P11B4 male)
AGAGGAAAAAAAGAGGAAGAGGAAACGGAGGCGCTAAAAATCGGAGCGCA
TCCCGTATACACATTTACCACCGCCTTTACAAAGGGTCCGAATATCTACG
CCTCACAAACTAATGTGGAAACCCCTCGGGTGGGCGGTGGCCGCCAGCCA
CGGGTCGAATCCCGCACTCAAAACATGCATCCTTCGCGCGGAAAACCCCG
CGGCGGGAACCGGTCGCCAGTCCGGCTCCCCCGGCTCTTACAGAATTCGC
CCATCTTTCAACTCAAAAAAGAAGAAAAAGACAAGAAAATTTGTGTGGTG
AACAAACCGATCGGGCTGCCTCGGTGGTGAAGAGGAAAAAAAGAGGAAGA
GGAAACGGAGGCGCTAAAAATCGGAGCGCATCCCGTATACACATTTACCA
CCGCCTTTACAAAGGGTCCGAATATCTACGCCTCACAAACTAATGTGGAA
ACCCCTCGGGTGGGCGGTGGCCGCCAGCCACGGGTCGAATCCCGCACTCA
AAACATGCATCCTTCGCGCGGAAAACCCCGCGGCGGGAACCGGTCGCCAG
TCCGGCTCCCCCGGCTCTTACAGAATTCGCCCATCTTTCAACTCAAAAAA
GAAGAAAAAGACAAGAAAATTTGTGTGGTGAACAAACCGATCGGGCTGCC
TCGGTGGTGA
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