mRNA_M-pyrifera_M_contig80015.18764.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80015.18764.1
Unique NamemRNA_M-pyrifera_M_contig80015.18764.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80015.18764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80015contigM-pyrifera_M_contig80015:98..418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816705.7311144-UTR-M-pyrifera_M_contig80015:97..1181622816705.7311144-UTR-M-pyrifera_M_contig80015:97..118Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80015 98..118 +
1692278131.1512053-UTR-M-pyrifera_M_contig80015:97..1181692278131.1512053-UTR-M-pyrifera_M_contig80015:97..118Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80015 98..118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816705.74295-CDS-M-pyrifera_M_contig80015:118..4181622816705.74295-CDS-M-pyrifera_M_contig80015:118..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80015 119..418 +
1692278131.1634254-CDS-M-pyrifera_M_contig80015:118..4181692278131.1634254-CDS-M-pyrifera_M_contig80015:118..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80015 119..418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80015.18764.1prot_M-pyrifera_M_contig80015.18764.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80015 119..418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80015.18764.1

>prot_M-pyrifera_M_contig80015.18764.1 ID=prot_M-pyrifera_M_contig80015.18764.1|Name=mRNA_M-pyrifera_M_contig80015.18764.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MAQQQQQQQQQPQLQLPPPQIPVQQTQQQQQQQQQQQQQQRGFQMMPGHP
GAGAAPPPPHPGPPHTPPQPQRPGSVGGMGGMPGGGGRMGAGGPHELGG*
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mRNA from alignment at M-pyrifera_M_contig80015:98..418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80015.18764.1 ID=mRNA_M-pyrifera_M_contig80015.18764.1|Name=mRNA_M-pyrifera_M_contig80015.18764.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig80015:98..418+ (Macrocystis pyrifera P11B4 male)
TTTTTTTTTTTTTTTTTCCAGATGGCGCAGCAGCAGCAGCAACAGCAGCA
ACAACCCCAGCTGCAGCTACCTCCACCCCAAATCCCCGTCCAGCAAACAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGAGGGGCTTC
CAGATGATGCCTGGGCACCCTGGCGCGGGGGCAGCCCCTCCGCCGCCCCA
CCCGGGACCACCCCACACACCTCCGCAACCGCAGAGGCCGGGTAGCGTCG
GCGGGATGGGTGGTATGCCGGGGGGAGGGGGGAGAATGGGAGCAGGGGGT
CCCCACGAGCTTGGAGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80015:98..418+

>mRNA_M-pyrifera_M_contig80015.18764.1 ID=mRNA_M-pyrifera_M_contig80015.18764.1|Name=mRNA_M-pyrifera_M_contig80015.18764.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig80015:98..418+ (Macrocystis pyrifera P11B4 male)
ATGGCGCAGCAGCAGCAGCAACAGCAGCAACAACCCCAGCTGCAGCTACC
TCCACCCCAAATCCCCGTCCAGCAAACACAGCAGCAGCAGCAGCAGCAGC
AGCAGCAACAGCAACAGCAGAGGGGCTTCCAGATGATGCCTGGGCACCCT
GGCGCGGGGGCAGCCCCTCCGCCGCCCCACCCGGGACCACCCCACACACC
TCCGCAACCGCAGAGGCCGGGTAGCGTCGGCGGGATGGGTGGTATGCCGG
GGGGAGGGGGGAGAATGGGAGCAGGGGGTCCCCACGAGCTTGGAGGGTGA
ATGGCGCAGCAGCAGCAGCAACAGCAGCAACAACCCCAGCTGCAGCTACC
TCCACCCCAAATCCCCGTCCAGCAAACACAGCAGCAGCAGCAGCAGCAGC
AGCAGCAACAGCAACAGCAGAGGGGCTTCCAGATGATGCCTGGGCACCCT
GGCGCGGGGGCAGCCCCTCCGCCGCCCCACCCGGGACCACCCCACACACC
TCCGCAACCGCAGAGGCCGGGTAGCGTCGGCGGGATGGGTGGTATGCCGG
GGGGAGGGGGGAGAATGGGAGCAGGGGGTCCCCACGAGCTTGGAGGGTGA
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