mRNA_M-pyrifera_M_contig79984.18758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79984.18758.1
Unique NamemRNA_M-pyrifera_M_contig79984.18758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: UPI001403F43A (ATP-dependent DNA helicase PIF1 isoform X2 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403F43A)

HSP 1 Score: 223 bits (569), Expect = 3.250e-64
Identity = 136/300 (45.33%), Postives = 172/300 (57.33%), Query Frame = 1
Query:   16 TAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRC-DAATTALLAPRHAAPRPKAGVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVGAK-RTPVVRMANG 909
            T  TASTG+AACH+GG TLH+FAG+    + P E  + +ARR  VL+RWR+  TL++DEV MV A  F+ ++A+AR  RG D PFGGIQLVL GDF QLPPVS+    ++                       F F++ SW   V L +EL QV RQKD   +R L  +R GRC D  T  L+A +  A   K G+L TR+CTHR DV  IN  +L  +      F+A+D  PS      A  LD  C     L L++GAQVM  +NLD  RGLVNG+RGVV  F   K   P+VR A G
Sbjct:  281 TIATASTGVAACHIGGMTLHAFAGMGS-GMGPLEQCVTMARRPGVLQRWRSCHTLIIDEVSMVSADFFDKMEAVARTVRGRDEPFGGIQLVLSGDFLQLPPVSRDRTVKR----------------------TFSFQAKSWRRCVHLAMELTQVHRQKDQAFIRVLQMVRTGRCTDEVTRCLVATKDNAIE-KDGILATRLCTHRDDVQLINTCQLAKLPGETHMFDALDSDPSQ-----AKALDAMCPVEASLQLRRGAQVMLTKNLDVQRGLVNGARGVVTDFSTEKFGLPLVRFACG 551          
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: UPI001402C2A9 (ATP-dependent DNA helicase PIF1 isoform X1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402C2A9)

HSP 1 Score: 223 bits (569), Expect = 3.420e-64
Identity = 136/300 (45.33%), Postives = 172/300 (57.33%), Query Frame = 1
Query:   16 TAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRC-DAATTALLAPRHAAPRPKAGVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVGAK-RTPVVRMANG 909
            T  TASTG+AACH+GG TLH+FAG+    + P E  + +ARR  VL+RWR+  TL++DEV MV A  F+ ++A+AR  RG D PFGGIQLVL GDF QLPPVS+    ++                       F F++ SW   V L +EL QV RQKD   +R L  +R GRC D  T  L+A +  A   K G+L TR+CTHR DV  IN  +L  +      F+A+D  PS      A  LD  C     L L++GAQVM  +NLD  RGLVNG+RGVV  F   K   P+VR A G
Sbjct:  281 TIATASTGVAACHIGGMTLHAFAGMGS-GMGPLEQCVTMARRPGVLQRWRSCHTLIIDEVSMVSADFFDKMEAVARTVRGRDEPFGGIQLVLSGDFLQLPPVSRDRTVKR----------------------TFSFQAKSWRRCVHLAMELTQVHRQKDQAFIRVLQMVRTGRCTDEVTRCLVATKDNAIE-KDGILATRLCTHRDDVQLINTCQLAKLPGETHMFDALDSDPSQ-----AKALDAMCPVEASLQLRRGAQVMLTKNLDVQRGLVNGARGVVTDFSTEKFGLPLVRFACG 551          
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: A0A5N5SV06_9CRUS (ATP-dependent DNA helicase n=3 Tax=Armadillidium TaxID=13346 RepID=A0A5N5SV06_9CRUS)

HSP 1 Score: 215 bits (548), Expect = 9.260e-64
Identity = 128/298 (42.95%), Postives = 170/298 (57.05%), Query Frame = 1
Query:   16 TAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRCDAATTALLAPRHAAPRPKAGVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVGAKRTPVVRMANG 909
            T VTASTGIAACH+GG TLHSFAG+   N+ P    + +ARR  V+  W+    L++DE+ MVD   FE ++A+AR   G+D+PFGGIQL+LCGDF QLPPVS  GA +                        FCF++S+W   +   +EL QV RQ D   +  L  IR GRC+     +LA        + G+  TR+CTH+ DV+ IN  +L+ +   +  F +VD  P LS     D LD S      L LK GAQVM ++NLD  +GLVNG+RGVV GF G    P+V+  +G
Sbjct:   25 TFVTASTGIAACHIGGTTLHSFAGIGNGNL-PLNECINMARRKSVVHHWKTCKHLIIDEISMVDGEFFEKMEAVARNILGNDKPFGGIQLILCGDFLQLPPVSTKGAKKS-----------------------FCFQTSAWDKCINTNIELLQVKRQNDPLFIEILQNIRIGRCNPDHEKVLAETVNNNVEREGIKATRLCTHKDDVEHINSVQLKKLPGDSRIFSSVDSDPYLS-----DTLDNSTPVLGKLHLKVGAQVMLMKNLDVSQGLVNGARGVVTGFSGTG-LPIVKFTSG 292          
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: UPI0014033E3C (ATP-dependent DNA helicase PIF1 isoform X3 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014033E3C)

HSP 1 Score: 220 bits (561), Expect = 2.290e-63
Identity = 130/285 (45.61%), Postives = 165/285 (57.89%), Query Frame = 1
Query:   16 TAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRC-DAATTALLAPRHAAPRPKAGVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGF 867
            T  TASTG+AACH+GG TLH+FAG+    + P E  + +ARR  VL+RWR+  TL++DEV MV A  F+ ++A+AR  RG D PFGGIQLVL GDF QLPPVS+    ++                       F F++ SW   V L +EL QV RQKD   +R L  +R GRC D  T  L+A +  A   K G+L TR+CTHR DV  IN  +L  +      F+A+D  PS      A  LD  C     L L++GAQVM  +NLD  RGLVNG+RGVV  F
Sbjct:  281 TIATASTGVAACHIGGMTLHAFAGMGS-GMGPLEQCVTMARRPGVLQRWRSCHTLIIDEVSMVSADFFDKMEAVARTVRGRDEPFGGIQLVLSGDFLQLPPVSRDRTVKR----------------------TFSFQAKSWRRCVHLAMELTQVHRQKDQAFIRVLQMVRTGRCTDEVTRCLVATKDNAIE-KDGILATRLCTHRDDVQLINTCQLAKLPGETHMFDALDSDPSQ-----AKALDAMCPVEASLQLRRGAQVMLTKNLDVQRGLVNGARGVVTDF 536          
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: UPI0006B0D2DA (ATP-dependent DNA helicase PIF1-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0D2DA)

HSP 1 Score: 219 bits (559), Expect = 3.650e-63
Identity = 128/301 (42.52%), Postives = 178/301 (59.14%), Query Frame = 1
Query:   10 SRTAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRCDAATTALLAPRHAAPRPKAGVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVG-AKRTPVVRMANG 909
            + T  TASTGIAAC +GG TLHSFAG+   + S  E  +  A+R EV ++WR    LVVDE+ MVD   F+ ++ +ARV R +D+PFGGIQL+LCGDF QLPPVSK       + E+R                LFCF++S+W   + + +EL QV RQKD R +  L+ IR GRC      +LA        + G+  TR+CTH+ DVD IN ++L+ +   +  F+A D  PSLS      ++D+ C     + LK+  Q+M  +NLD  RGLVNG+RGV+VGF    +  PV++  +G
Sbjct:  234 NHTVATASTGIAACQIGGITLHSFAGIGSGSYSL-EQCIKQAQRKEVAQQWRRCQHLVVDEISMVDGTYFQKLEKVARVVRNNDKPFGGIQLILCGDFLQLPPVSK-------SNENR----------------LFCFQTSAWKKCIQINMELTQVKRQKDLRFINILNSIRLGRCPDTIAKILASSSDHQIEQNGIKATRLCTHKEDVDYINRSQLQDLPGNSKVFKATDSDPSLS-----QLMDKHCPVSTSIELKQDTQIMLTKNLDVQRGLVNGARGVIVGFENNVEGLPVIKFVSG 505          
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: UPI0003F0F14C (ATP-dependent DNA helicase PIF1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0F14C)

HSP 1 Score: 213 bits (542), Expect = 7.270e-63
Identity = 124/312 (39.74%), Postives = 172/312 (55.13%), Query Frame = 1
Query:   16 TAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRCDAATTALLAPRHAAPRPKAGVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVGAKR-TPVVRMANGRQVAFEPVQVRVK 948
            T  TASTG+AACH+ G TLH FAG+     S  E  + +A R    ++W+    L+VDEV M+DA  F  ++ +ARV RG D PFGGIQL+LCGDF QLPPV+K G  R                       LFCF+SS+W   + +  EL +V RQ D   +  L  IR GRC       L   ++     AG+L TR+CTH+ DV+ IN+ +L  +      F A+D  P+L       +++  C  +  +TLK+G QVM  +NL   RGLVNG+RGVV+GF  A++  P++R  NG +    P +  +K
Sbjct:    1 TFATASTGVAACHINGITLHQFAGIGSGTQSL-ETCIELASRPARTKQWKRCKHLIVDEVSMLDADFFTKIEHVARVIRGKDLPFGGIQLILCGDFLQLPPVTKSGQKR-----------------------LFCFQSSAWHNCIQMTFELTEVRRQTDIEFINILQHIRIGRCPKEMCEKLVSTNSNKIETAGILATRLCTHKEDVEQINVVQLEKLSGETRIFNALDSDPAL-----VKLINNQCSVKAKITLKRGTQVMLTKNLAVQRGLVNGARGVVIGFNNAEKGLPIIRFLNGVEQTITPERWTIK 283          
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: A0A2P6VG44_9CHLO (ATP-dependent DNA helicase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VG44_9CHLO)

HSP 1 Score: 218 bits (556), Expect = 1.910e-62
Identity = 136/305 (44.59%), Postives = 181/305 (59.34%), Query Frame = 1
Query:    1 PRDSRTAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRCDAATTALLAPRHAAPRPKA-GVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVGAKRTPVVRMANGR 912
            PR++ T VT +TG+AACHLGG T++S+AG+ R   S  E+ + +A R E L+RWRA   L+VDEV M+D   F++++A+AR  RGS  PFGGIQL+L GDF QLPPV+K    R+GA + +                 FCFE+ SWA  +P    L +VFRQ D+  V  L +IR G C     + L    A P P   G+LPT++ THR DVD IN  +L+ +      F A DVG         +VL  +C  RR L LK GAQV  ++N+   +GLVNG+RGVV  F  ++  PVVR ANGR
Sbjct:  264 PRNT-TFVTGTTGLAACHLGGTTINSYAGIGRGEGSL-ESLVRMAGRGESLQRWRATTHLIVDEVSMMDGRLFDTLEAVARKVRGSAAPFGGIQLILSGDFHQLPPVAK---GREGAAQRK-----------------FCFEAESWARCIPESCFLSKVFRQSDNEFVDLLGKIRSGSCPQDKVSQLLKTCARPLPTDDGILPTKLFTHREDVDLINAQQLKALPSEPHKFVAQDVGSG-------EVLAAACPARRTLELKVGAQVTLIKNISQRQGLVNGARGVVEKFNDSQGLPVVRFANGR 539          
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: A0A2P6TVH0_CHLSO (ATP-dependent DNA helicase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVH0_CHLSO)

HSP 1 Score: 218 bits (555), Expect = 2.760e-62
Identity = 138/305 (45.25%), Postives = 179/305 (58.69%), Query Frame = 1
Query:    1 PRDSRTAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRCDAATTALLAPRHAAPRP-KAGVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVGAKRTPVVRMANGR 912
            PRD+ T VT +TG+AACHLGG T++SFAG+ R   S  EA +  A R E L+RWRA   L++DEV M+D   F++++ +AR  RGS+ PFGGIQL+L GDF QLPPV+K                    G+       FCFE+ SWA  V     L +VFRQ D+  V  L +IR G C     + L      P P + G+LPT++ THR DVDA+N  +LR +   A  F A D G   SP    DVL  +C  RR L LK GAQVM +RN+   +GLVNG+RGVV  F  ++  PVVR A+G+
Sbjct:  266 PRDT-TFVTGTTGLAACHLGGTTINSFAGIGRAEGSL-EALMRSAARGESLQRWRATTHLIIDEVSMMDGRLFDALEHVARKVRGSNAPFGGIQLILSGDFHQLPPVAK--------------------GKDAASQRKFCFEAESWARCVHECCFLSKVFRQADNEFVEMLARIRSGDCPRDKLSHLLRTCQRPLPVEDGILPTKLYTHREDVDALNAQQLRALPGEARRFVAQDAG---SP----DVLAAACPARRTLDLKVGAQVMLIRNISHRQGLVNGARGVVERFSESQNLPVVRFASGK 541          
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: F6WYU9_CIOIN (ATP-dependent DNA helicase PIF1 n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6WYU9_CIOIN)

HSP 1 Score: 216 bits (551), Expect = 4.460e-62
Identity = 121/300 (40.33%), Postives = 172/300 (57.33%), Query Frame = 1
Query:   13 RTAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRCDAATTALLAPRHAAPRPKAGVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVGAKRT-PVVRMANG 909
            +TAVTASTG+AACH+GG TLHSFAG+   + S          R  V+++W+A   L++DE+ M+    F+ ++A+AR  RGS  PFGGIQL+LCGDFFQLPPVSK     K                        CF+S SW   V +  ELK V+RQ D++ ++ L  IR GRC A    +L           G+L T++CTH+ +V   N  +L  +    + +EA D     S  A  D++D+     +++TLKKGAQVM  +NL+ G+G+VNG+RG+V GF  +++  P+VR  NG
Sbjct:  237 QTAVTASTGVAACHIGGVTLHSFAGIGSGSASIENCIQLAKSRPAVVKQWKACRHLIIDEISMISGDFFDKIEAVARAVRGSMDPFGGIQLILCGDFFQLPPVSKGKETVK-----------------------LCFQSKSWQPCVDVCWELKHVYRQTDTKFIQMLQDIRIGRCTAKIEEVLKATKLNKTENNGILATQLCTHKENVQLCNKNQLEKLPSDPIVYEAQD-----STTAFTDIIDKMLPDTKIITLKKGAQVMLNKNLNVGKGMVNGARGIVTGFTKSEQPLPIVRFLNG 508          
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Match: UPI002019B95A (ATP-dependent DNA helicase PIF1 n=2 Tax=Heteromyidae TaxID=10015 RepID=UPI002019B95A)

HSP 1 Score: 216 bits (551), Expect = 1.120e-61
Identity = 130/299 (43.48%), Postives = 172/299 (57.53%), Query Frame = 1
Query:   16 TAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEVLRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGDFFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAVPLVVELKQVFRQKDSRLVRALHQIRRGRCDAATTALLAPRHAAPRPKAGVLPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDRSCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVGAKR-TPVVRMANG 909
            T  TASTG+AACH+GG TLH+FAG+     +P    +A+A+R  V + W A   LV+DE+ MV+A  F+ ++A+AR  R  ++PFGGIQL++CGDF QLPPV+K                G+++ +       FCF++ SW   VPL +EL +V+RQ D   V  L  +R GRC    T  L    A    + G++ TR+CTH+ DV   N   L+ +R     FEAVD  P L     A  LD  C   RLL LK+GAQVM ++NL   RGLVNG+RGVVVGF    R  P VR   G
Sbjct:  269 TVATASTGVAACHIGGTTLHAFAGIGS-GQAPLAQCVALAQRPGVRQGWLACQRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTK----------------GSQRPQ-------FCFQAKSWRRCVPLTLELTEVWRQADKTFVSLLQAVRLGRCSDEVTRQLRATAAHKVGRDGIVATRLCTHQDDVALTNERRLQELRGEVHSFEAVDSDPEL-----ARTLDAQCPVSRLLQLKQGAQVMLVKNLAVSRGLVNGARGVVVGFEAEGRGLPQVRFLCG 538          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79984.18758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001403F43A3.250e-6445.33ATP-dependent DNA helicase PIF1 isoform X2 n=1 Tax... [more]
UPI001402C2A93.420e-6445.33ATP-dependent DNA helicase PIF1 isoform X1 n=1 Tax... [more]
A0A5N5SV06_9CRUS9.260e-6442.95ATP-dependent DNA helicase n=3 Tax=Armadillidium T... [more]
UPI0014033E3C2.290e-6345.61ATP-dependent DNA helicase PIF1 isoform X3 n=1 Tax... [more]
UPI0006B0D2DA3.650e-6342.52ATP-dependent DNA helicase PIF1-like n=1 Tax=Limul... [more]
UPI0003F0F14C7.270e-6339.74ATP-dependent DNA helicase PIF1-like n=1 Tax=Sacco... [more]
A0A2P6VG44_9CHLO1.910e-6244.59ATP-dependent DNA helicase n=1 Tax=Micractinium co... [more]
A0A2P6TVH0_CHLSO2.760e-6245.25ATP-dependent DNA helicase n=1 Tax=Chlorella sorok... [more]
F6WYU9_CIOIN4.460e-6240.33ATP-dependent DNA helicase PIF1 n=2 Tax=Ciona inte... [more]
UPI002019B95A1.120e-6143.48ATP-dependent DNA helicase PIF1 n=2 Tax=Heteromyid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79984contigM-pyrifera_M_contig79984:8..955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score223.0
Seed ortholog evalue1.9e-55
Seed eggNOG ortholog7719.XP_009861135.1
Preferred namePIF1
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000166,GO:0000228,GO:0000287,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0004857,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010521,GO:0010556,GO:0010558,GO:0010605,GO:0010639,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017116,GO:0019219,GO:0019222,GO:0030234,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033043,GO:0033044,GO:0033677,GO:0033678,GO:0033680,GO:0033682,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042162,GO:0042623,GO:0043086,GO:0043139,GO:0043141,GO:0043142,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044806,GO:0045934,GO:0046483,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051338,GO:0051348,GO:0051972,GO:0051974,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098772,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1904356,GO:1904357,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.ATP-dependent 5'-3' DNA/RNA helicase activity
EggNOG OGs38G42@33154,3BASM@33208,3CY11@33213,488E0@7711,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Exons1
Model size948
Cds size948
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.4877133-CDS-M-pyrifera_M_contig79984:7..9551622816703.4877133-CDS-M-pyrifera_M_contig79984:7..955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79984 8..955 -
1692278129.3399196-CDS-M-pyrifera_M_contig79984:7..9551692278129.3399196-CDS-M-pyrifera_M_contig79984:7..955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79984 8..955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79984.18758.1prot_M-pyrifera_M_contig79984.18758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79984 8..955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79984.18758.1

>prot_M-pyrifera_M_contig79984.18758.1 ID=prot_M-pyrifera_M_contig79984.18758.1|Name=mRNA_M-pyrifera_M_contig79984.18758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=316bp
PRDSRTAVTASTGIAACHLGGQTLHSFAGLSRVNVSPREAALAVARRSEV
LRRWRAADTLVVDEVYMVDAATFESVDAIARVARGSDRPFGGIQLVLCGD
FFQLPPVSKHGAARKGAKEHRGAKWGAEKGEKRGGSGLFCFESSSWAAAV
PLVVELKQVFRQKDSRLVRALHQIRRGRCDAATTALLAPRHAAPRPKAGV
LPTRICTHRSDVDAINLAELRGIREPAVDFEAVDVGPSLSPGAVADVLDR
SCCFRRLLTLKKGAQVMCLRNLDPGRGLVNGSRGVVVGFVGAKRTPVVRM
ANGRQVAFEPVQVRVK
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mRNA from alignment at M-pyrifera_M_contig79984:8..955-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79984.18758.1 ID=mRNA_M-pyrifera_M_contig79984.18758.1|Name=mRNA_M-pyrifera_M_contig79984.18758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig79984:8..955- (Macrocystis pyrifera P11B4 male)
CCGAGGGACTCTCGCACTGCGGTGACTGCGTCAACGGGGATTGCGGCGTG CCACTTGGGCGGGCAGACGCTGCATTCCTTCGCGGGCCTCTCTCGGGTGA ATGTTTCGCCGAGGGAGGCTGCGCTGGCAGTAGCGCGGCGCTCTGAAGTG CTGCGTCGCTGGAGGGCTGCAGACACGCTGGTGGTGGACGAAGTCTACAT GGTGGACGCCGCAACCTTTGAAAGCGTCGACGCCATTGCCAGGGTCGCCA GGGGCAGCGATAGGCCATTCGGAGGCATCCAGCTCGTGCTCTGTGGCGAT TTCTTCCAGCTCCCGCCCGTTTCGAAGCACGGGGCCGCGAGAAAAGGGGC CAAAGAGCACCGAGGAGCAAAGTGGGGGGCAGAAAAAGGGGAGAAAAGAG GTGGGTCGGGCCTGTTTTGCTTCGAAAGCAGCAGCTGGGCGGCCGCGGTG CCTCTTGTGGTGGAGCTGAAGCAGGTGTTTCGGCAGAAGGACTCGAGGTT GGTGCGGGCGCTGCACCAGATCCGCAGAGGACGCTGTGACGCCGCCACAA CGGCTCTTTTGGCGCCACGACACGCCGCGCCGCGGCCCAAGGCGGGCGTG CTGCCGACTCGCATCTGCACGCACCGCTCCGACGTGGACGCCATCAACCT GGCGGAGCTGCGAGGGATCCGAGAGCCAGCGGTGGACTTTGAGGCGGTCG ATGTGGGGCCTTCGCTTTCGCCGGGCGCCGTTGCCGATGTGTTGGACCGG AGCTGCTGCTTCCGGCGGCTGCTGACCTTGAAGAAAGGGGCGCAGGTCAT GTGCCTGCGGAACCTGGACCCTGGGAGGGGCCTGGTGAACGGCTCTCGAG GCGTGGTGGTGGGGTTTGTGGGCGCGAAGCGCACGCCAGTGGTTCGCATG GCCAACGGCAGACAAGTGGCCTTTGAGCCCGTGCAAGTGCGTGTCAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79984:8..955-

>mRNA_M-pyrifera_M_contig79984.18758.1 ID=mRNA_M-pyrifera_M_contig79984.18758.1|Name=mRNA_M-pyrifera_M_contig79984.18758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1896bp|location=Sequence derived from alignment at M-pyrifera_M_contig79984:8..955- (Macrocystis pyrifera P11B4 male)
CCGAGGGACTCTCGCACTGCGGTGACTGCGTCAACGGGGATTGCGGCGTG
CCACTTGGGCGGGCAGACGCTGCATTCCTTCGCGGGCCTCTCTCGGGTGA
ATGTTTCGCCGAGGGAGGCTGCGCTGGCAGTAGCGCGGCGCTCTGAAGTG
CTGCGTCGCTGGAGGGCTGCAGACACGCTGGTGGTGGACGAAGTCTACAT
GGTGGACGCCGCAACCTTTGAAAGCGTCGACGCCATTGCCAGGGTCGCCA
GGGGCAGCGATAGGCCATTCGGAGGCATCCAGCTCGTGCTCTGTGGCGAT
TTCTTCCAGCTCCCGCCCGTTTCGAAGCACGGGGCCGCGAGAAAAGGGGC
CAAAGAGCACCGAGGAGCAAAGTGGGGGGCAGAAAAAGGGGAGAAAAGAG
GTGGGTCGGGCCTGTTTTGCTTCGAAAGCAGCAGCTGGGCGGCCGCGGTG
CCTCTTGTGGTGGAGCTGAAGCAGGTGTTTCGGCAGAAGGACTCGAGGTT
GGTGCGGGCGCTGCACCAGATCCGCAGAGGACGCTGTGACGCCGCCACAA
CGGCTCTTTTGGCGCCACGACACGCCGCGCCGCGGCCCAAGGCGGGCGTG
CTGCCGACTCGCATCTGCACGCACCGCTCCGACGTGGACGCCATCAACCT
GGCGGAGCTGCGAGGGATCCGAGAGCCAGCGGTGGACTTTGAGGCGGTCG
ATGTGGGGCCTTCGCTTTCGCCGGGCGCCGTTGCCGATGTGTTGGACCGG
AGCTGCTGCTTCCGGCGGCTGCTGACCTTGAAGAAAGGGGCGCAGGTCAT
GTGCCTGCGGAACCTGGACCCTGGGAGGGGCCTGGTGAACGGCTCTCGAG
GCGTGGTGGTGGGGTTTGTGGGCGCGAAGCGCACGCCAGTGGTTCGCATG
GCCAACGGCAGACAAGTGGCCTTTGAGCCCGTGCAAGTGCGTGTCAAACC
GAGGGACTCTCGCACTGCGGTGACTGCGTCAACGGGGATTGCGGCGTGCC
ACTTGGGCGGGCAGACGCTGCATTCCTTCGCGGGCCTCTCTCGGGTGAAT
GTTTCGCCGAGGGAGGCTGCGCTGGCAGTAGCGCGGCGCTCTGAAGTGCT
GCGTCGCTGGAGGGCTGCAGACACGCTGGTGGTGGACGAAGTCTACATGG
TGGACGCCGCAACCTTTGAAAGCGTCGACGCCATTGCCAGGGTCGCCAGG
GGCAGCGATAGGCCATTCGGAGGCATCCAGCTCGTGCTCTGTGGCGATTT
CTTCCAGCTCCCGCCCGTTTCGAAGCACGGGGCCGCGAGAAAAGGGGCCA
AAGAGCACCGAGGAGCAAAGTGGGGGGCAGAAAAAGGGGAGAAAAGAGGT
GGGTCGGGCCTGTTTTGCTTCGAAAGCAGCAGCTGGGCGGCCGCGGTGCC
TCTTGTGGTGGAGCTGAAGCAGGTGTTTCGGCAGAAGGACTCGAGGTTGG
TGCGGGCGCTGCACCAGATCCGCAGAGGACGCTGTGACGCCGCCACAACG
GCTCTTTTGGCGCCACGACACGCCGCGCCGCGGCCCAAGGCGGGCGTGCT
GCCGACTCGCATCTGCACGCACCGCTCCGACGTGGACGCCATCAACCTGG
CGGAGCTGCGAGGGATCCGAGAGCCAGCGGTGGACTTTGAGGCGGTCGAT
GTGGGGCCTTCGCTTTCGCCGGGCGCCGTTGCCGATGTGTTGGACCGGAG
CTGCTGCTTCCGGCGGCTGCTGACCTTGAAGAAAGGGGCGCAGGTCATGT
GCCTGCGGAACCTGGACCCTGGGAGGGGCCTGGTGAACGGCTCTCGAGGC
GTGGTGGTGGGGTTTGTGGGCGCGAAGCGCACGCCAGTGGTTCGCATGGC
CAACGGCAGACAAGTGGCCTTTGAGCCCGTGCAAGTGCGTGTCAAA
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