mRNA_M-pyrifera_M_contig79979.18756.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79979.18756.1
Unique NamemRNA_M-pyrifera_M_contig79979.18756.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79979.18756.1 vs. uniprot
Match: A0A7X7LKN4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X7LKN4_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 4.550e-5
Identity = 51/181 (28.18%), Postives = 86/181 (47.51%), Query Frame = 1 
Query:   31 MYGSLQVSSGILNVG--------NQTDQSTDNSIRYDGTS-NEIIVDGGILNVGGSIRPVGTDVSAIMNFTLSSGTVSLARNTTTNQLRTNAGWSINDADFAI-NNSSSSFTMSGGILEIIRPKSGDGKVISISALVSAYTVTGGTVSILRNAHDALSANNTNLNSDIGIYSSVPFWNLQI 543
            ++G + ++ G++ +G        N    +TDN I Y G   +EI ++GG L V G IR   T  + I+ +  + G V +           N   S+ ++ F + NNS SSF M+GG + I+R   G  K+  +    ++ +V+GG +     +      N  N   D  +YS +P +NL I
Sbjct:  326 LHGKITLNEGVIWIGPTAVSTGNNNNTYNTDNDIEYSGGGYSEIEINGGSLFVNGKIRSNTTATTGILKYRQTDGKVVV-----------NGRGSVTNSQFEVLNNSGSSFNMTGGAIYIVR---GGSKIGDLYLNTNSSSVSGGDIFF---SQSPPMVNAVNQAQDYKLYSKIPLFNLII 489
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BLAST of mRNA_M-pyrifera_M_contig79979.18756.1 vs. uniprot
Match: A0A537HZE1_9BACT (Immunoglobulin domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A537HZE1_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.560e-5
Identity = 45/144 (31.25%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:   10 ASAGTLQMYGSLQVSSGILNVGNQTDQSTDNSIRYDGTSNEIIVDGGILNVGGSIRPVGTDVSAIMNFTLSSGTVSLARNTTTNQLRTNAGWSINDADFAINNSSSSFTMSGGILEIIRPKSGDGKVISISALVSAYTVTGGTV 441
            A +GT  + GS+QV+SG  N+G     ++ N++ Y G  + +++DGG + + G ++  G      +N+  S G +++A    T         S +D  F I+ SSSSFTMSGG++ +    +G G       L   +++TGG+V
Sbjct:  373 AQSGTPGLIGSIQVTSGSYNIGT----TSLNALVY-GAGSSLLLDGGTMTISGGLQSGG---GGAINYNQSGGVLTVANVGNT---------SASDPSFDIS-SSSSFTMSGGVIILKNENTGAGSPRDYRNLALTFSITGGSV 498
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79979.18756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X7LKN4_9BACT4.550e-528.18Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
A0A537HZE1_9BACT6.560e-531.25Immunoglobulin domain-containing protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79979contigM-pyrifera_M_contig79979:245..787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue9.6e-07
Seed eggNOG ortholog927658.AJUM01000042_gene1722
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.domain, Protein
EggNOG OGs2G0DU@200643,3XM24@558415,4PMJQ@976,COG2353@1,COG2353@2,COG2911@1,COG2911@2,COG3210@1,COG3210@2
COG Functional cat.U
Best tax levelMarinilabiliaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size543
Cds size543
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.4200435-CDS-M-pyrifera_M_contig79979:244..7871622816703.4200435-CDS-M-pyrifera_M_contig79979:244..787Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79979 245..787 -
1692278129.3085868-CDS-M-pyrifera_M_contig79979:244..7871692278129.3085868-CDS-M-pyrifera_M_contig79979:244..787Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79979 245..787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79979.18756.1prot_M-pyrifera_M_contig79979.18756.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79979 245..787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79979.18756.1

>prot_M-pyrifera_M_contig79979.18756.1 ID=prot_M-pyrifera_M_contig79979.18756.1|Name=mRNA_M-pyrifera_M_contig79979.18756.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
MTGASAGTLQMYGSLQVSSGILNVGNQTDQSTDNSIRYDGTSNEIIVDGG
ILNVGGSIRPVGTDVSAIMNFTLSSGTVSLARNTTTNQLRTNAGWSINDA
DFAINNSSSSFTMSGGILEIIRPKSGDGKVISISALVSAYTVTGGTVSIL
RNAHDALSANNTNLNSDIGIYSSVPFWNLQI
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mRNA from alignment at M-pyrifera_M_contig79979:245..787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79979.18756.1 ID=mRNA_M-pyrifera_M_contig79979.18756.1|Name=mRNA_M-pyrifera_M_contig79979.18756.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=543bp|location=Sequence derived from alignment at M-pyrifera_M_contig79979:245..787- (Macrocystis pyrifera P11B4 male)
ATGACCGGAGCAAGTGCAGGAACCTTACAGATGTATGGTAGCCTTCAGGT
GTCTAGCGGAATTTTAAATGTAGGTAATCAAACCGATCAATCCACTGACA
ACAGCATTAGATATGACGGCACGTCAAACGAAATCATAGTAGATGGTGGT
ATTTTGAATGTAGGCGGATCAATCAGACCTGTCGGTACTGATGTTTCTGC
GATAATGAACTTTACATTGAGTAGTGGTACTGTATCTCTTGCTCGAAACA
CTACGACAAACCAGCTACGAACGAATGCTGGTTGGTCCATCAATGATGCT
GACTTTGCTATCAATAATTCTAGCTCATCTTTCACCATGAGTGGTGGAAT
CTTGGAAATTATAAGACCAAAAAGCGGTGATGGTAAAGTCATATCCATAT
CTGCCCTGGTCTCGGCCTATACAGTCACCGGCGGTACGGTCAGTATACTC
AGAAATGCTCACGATGCCTTAAGTGCAAACAATACCAACCTCAATAGCGA
CATTGGTATCTATTCAAGTGTTCCTTTTTGGAACTTGCAGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79979:245..787-

>mRNA_M-pyrifera_M_contig79979.18756.1 ID=mRNA_M-pyrifera_M_contig79979.18756.1|Name=mRNA_M-pyrifera_M_contig79979.18756.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig79979:245..787- (Macrocystis pyrifera P11B4 male)
ATGACCGGAGCAAGTGCAGGAACCTTACAGATGTATGGTAGCCTTCAGGT
GTCTAGCGGAATTTTAAATGTAGGTAATCAAACCGATCAATCCACTGACA
ACAGCATTAGATATGACGGCACGTCAAACGAAATCATAGTAGATGGTGGT
ATTTTGAATGTAGGCGGATCAATCAGACCTGTCGGTACTGATGTTTCTGC
GATAATGAACTTTACATTGAGTAGTGGTACTGTATCTCTTGCTCGAAACA
CTACGACAAACCAGCTACGAACGAATGCTGGTTGGTCCATCAATGATGCT
GACTTTGCTATCAATAATTCTAGCTCATCTTTCACCATGAGTGGTGGAAT
CTTGGAAATTATAAGACCAAAAAGCGGTGATGGTAAAGTCATATCCATAT
CTGCCCTGGTCTCGGCCTATACAGTCACCGGCGGTACGGTCAGTATACTC
AGAAATGCTCACGATGCCTTAAGTGCAAACAATACCAACCTCAATAGCGA
CATTGGTATCTATTCAAGTGTTCCTTTTTGGAACTTGCAGATTATGACCG
GAGCAAGTGCAGGAACCTTACAGATGTATGGTAGCCTTCAGGTGTCTAGC
GGAATTTTAAATGTAGGTAATCAAACCGATCAATCCACTGACAACAGCAT
TAGATATGACGGCACGTCAAACGAAATCATAGTAGATGGTGGTATTTTGA
ATGTAGGCGGATCAATCAGACCTGTCGGTACTGATGTTTCTGCGATAATG
AACTTTACATTGAGTAGTGGTACTGTATCTCTTGCTCGAAACACTACGAC
AAACCAGCTACGAACGAATGCTGGTTGGTCCATCAATGATGCTGACTTTG
CTATCAATAATTCTAGCTCATCTTTCACCATGAGTGGTGGAATCTTGGAA
ATTATAAGACCAAAAAGCGGTGATGGTAAAGTCATATCCATATCTGCCCT
GGTCTCGGCCTATACAGTCACCGGCGGTACGGTCAGTATACTCAGAAATG
CTCACGATGCCTTAAGTGCAAACAATACCAACCTCAATAGCGACATTGGT
ATCTATTCAAGTGTTCCTTTTTGGAACTTGCAGATT
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