mRNA_M-pyrifera_M_contig79968.18752.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A225WH55_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WH55_9STRA) HSP 1 Score: 202 bits (513), Expect = 1.150e-55 Identity = 109/247 (44.13%), Postives = 154/247 (62.35%), Query Frame = 1 Query: 7 LQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKKGATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSRAPL 747 L+ L AG++ KA KC F + ++LGH + A G P+ +++RE+P P +T A++RF+ + G+YR FVP++++ AAPLT LL+K A W E + A + + L+ P LAYPD S+ F L TDAS G GA ++Q+ G E+PVA+ S+ S YS+T+ EC AVV A + R ++ GR + TDHAALKWL S + TGRL RW +LQE+ V +R G V ADALSRAP+ Sbjct: 736 LERLAQAGLSLKASKCAFAKEQLEYLGHELDATGVRPMESLVQSVREFPVPVDTKAVKRFVHMAGFYRRFVPDFASKAAPLTKLLRKDAAWCWAEPQHEAFECLKTALTERPVLAYPDFSRSFKLVTDASAVGLGATLTQDQGQG-EQPVAYASKVNSPTVANYSITDLECAAVVWAVKLFRPYLYGRKFELVTDHAALKWLMTS--KDLTGRLHRWALQLQEYHFDVVYRPGASNVVADALSRAPV 979
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A7D9LSJ8_PARCT (RNA-directed DNA polymerase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LSJ8_PARCT) HSP 1 Score: 198 bits (503), Expect = 1.380e-55 Identity = 106/249 (42.57%), Postives = 150/249 (60.24%), Query Frame = 1 Query: 1 ETLQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKKGATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSRAPL 747 + LQA+ AG+ K KC F DF G VSAAG P + + +A+R +PTP N LRRFLG+ YYR F+ +S A PL L +KG + + Q A + + L AP A+PD + ++IL+TDASD G GAV++Q DE E+ V+F S+ FS AE ++ TE+E AVV A + ++ GR ++TDH ALKWL ++P G+L+RW+ +L+E+ + H M HADALSRAP+ Sbjct: 393 DVLQAIDRAGLRLKLSKCSFAKPRVDFFGFTVSAAGLAPNVTKVEAIRAFPTPQNLTELRRFLGMASYYRRFISGFSDIAGPLHRLTQKGVRFDWDKNRQQAFEQLKEQLISAPFFAFPDLNGDYILYTDASDVGIGAVLTQKDENEEEKVVSFTSKAFSGAEKNWTTTEKEAFAVVWALQYFHPYVYGRKVTIYTDHKALKWLR-DIKQPN-GKLARWILKLEEYDYTIEHLPNTKMQHADALSRAPV 639
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A8C5B0S3_GADMO (RT_RNaseH_2 domain-containing protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5B0S3_GADMO) HSP 1 Score: 192 bits (488), Expect = 1.740e-55 Identity = 110/248 (44.35%), Postives = 151/248 (60.89%), Query Frame = 1 Query: 1 ETLQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKKGATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSRAP 744 E L+ ++ AG+ GKC F E FLGH +S AG D+ A+R++PTP + LR FLG+ YYR FV +ST AAP+ SL++K + G ++ AA + L + P L P+T FIL TDAS+TG GAV+SQ G ER VA+ SRT +E Y VT +E LAV+ A +H + G P + TDHAALKWL +S +EP G+++RW+ +LQ F ++HRAG +AD+LSR P Sbjct: 36 EALERIKRAGLKLHPGKCRFLRQEVSFLGHRISGAGIMTEPDKVAAVRDWPTPTDIHQLRSFLGLASYYRRFVAGFSTVAAPMFSLMRKDTPYEWGPQQNAAFHELKQALCKDPVLVAPNTELPFILDTDASNTGLGAVLSQLTPDG-ERVVAYHSRTLDKSERNYCVTRKELLAVIDAVNHFKHILCGLPFTIRTDHAALKWL-MSFKEPE-GQVTRWIEQLQAFQFTIQHRAGESHTNADSLSRRP 280
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A1X7SMY3_AMPQE (Reverse transcriptase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SMY3_AMPQE) HSP 1 Score: 189 bits (481), Expect = 3.000e-55 Identity = 108/250 (43.20%), Postives = 142/250 (56.80%), Query Frame = 1 Query: 1 ETLQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKK----GATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSR 738 L LR AG+ AK KC+ G +LGH + P LD+ A++EYP P +R FLG+ GYYR F+PN+S A+PL+ L KK W + A + L ++P L PD SKEFIL TDAS+ G GAV+SQ D G + P+A+ S+ E RYS E+ECLA+ L A + ++LG+P V TDH AL WL + + T RL+RW LQ F V HR GRL +AD+LSR Sbjct: 94 RVLLRLREAGLTAKPQKCILGTDHCSYLGHIIGGGKVQPELDKLHAVKEYPVPKTKKEVRGFLGLAGYYRRFIPNFSAIASPLSDLTKKMEPTAVKWTTSCDK--AFNLLKDLLCQSPVLHSPDFSKEFILQTDASERGVGAVLSQLDNEGRDHPIAYFSKKLLPREERYSTIEKECLAIKLGIHAFKVYLLGKPFQVQTDHRALVWL--NNLKDKTSRLTRWSLSLQPFDFTVSHRTGRLNANADSLSR 339
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A2P4YT87_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YT87_9STRA) HSP 1 Score: 200 bits (509), Expect = 4.160e-55 Identity = 106/247 (42.91%), Postives = 154/247 (62.35%), Query Frame = 1 Query: 7 LQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKKGATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSRAPL 747 L+ L AG++ KA KC F + ++LGH + G P+ ++++ +P P +T ++RF+ + GYYR FVPN+++ AAP+T LL+KG+ W E +Q A + + G L+ P L YPD S+ F L TDAS G GAV++Q D+ ++PVA+ S+ S +YS+T+ EC AVV A + R ++ GR + TDHAALKWL S + GRL RW LQE+ + +R GR V ADALSRAP+ Sbjct: 1401 LERLSQAGLSLKASKCSFAQEKLEYLGHELDDEGVRPMGSLVESVKSFPVPTDTTEVKRFVHMAGYYRRFVPNFASKAAPMTKLLRKGSVWRWAETQQEAFEWLKGALTSRPLLTYPDFSRPFRLVTDASQIGLGAVLTQ-DQGNGDQPVAYASKVNSPTVAKYSITDLECAAVVWAVKLFRPYVYGRKFELVTDHAALKWLMTS--KELAGRLYRWSLLLQEYDFEIVYRPGRTNVVADALSRAPV 1644
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A0V0UK18_9BILA (Retrovirus-related Pol polyprotein from transposon (Fragment) n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0UK18_9BILA) HSP 1 Score: 191 bits (484), Expect = 5.380e-55 Identity = 103/242 (42.56%), Postives = 146/242 (60.33%), Query Frame = 1 Query: 16 LRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKKGATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSRA 741 LR AG+ K KC GV+E +LGH SA G P +T A++ +P PA+ +L+RFLG+T YYR F+ +Y+T AAPL LLK A ++ E QAA + L+ AP+L P+ S F + TDAS TG GA++ Q R +AF SR+ +E YS E+ECLA++ A + RH++LGR + +DHA L+WLA + GRL+RW LQE+ +++R G +A ALSR+ Sbjct: 8 LRNAGLTLKGSKCKIGVSEVRYLGHVFSAKGIAPCPSKTAAVKSWPVPADKTSLKRFLGLTSYYRRFMESYATIAAPLYELLKDDAPFIWTENSQAAFDRLKNCLTSAPTLCAPNFSDSFQVITDASGTGLGAILEQRG-----RVIAFASRSLRKSERNYSAIEKECLAIIFALKTFRHYLLGRSFTILSDHAPLQWLAAQKMD---GRLARWALSLQEYDYDIKYRPGSSNGNAYALSRS 241
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A3P9ND02_POERE (Ribonuclease H n=1 Tax=Poecilia reticulata TaxID=8081 RepID=A0A3P9ND02_POERE) HSP 1 Score: 192 bits (487), Expect = 5.830e-55 Identity = 115/248 (46.37%), Postives = 153/248 (61.69%), Query Frame = 1 Query: 1 ETLQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKKGATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSRAP 744 E A+R A + KC E FLGH +SAA + D+ +R++P P +T LR FLG+ YYR FV +++T A+PL L +KG T+ E AA A+ L AP L YPD ++ FIL T+AS+ G GAV+SQ E G ER VA+ SRT S AE Y VT RE LAVV R RH++ GR ++ TDHA+L WL ++ +EP G+L+RWL LQ+++ + HRAGRL +ADALSR P Sbjct: 51 EVFDAIRQANLQLHPRKCHLLRRETTFLGHVISAAAVSTDPDKVSTVRDWPEPRDTKELRSFLGLASYYRRFVKDFATLASPLHRLTQKGQTFHWDEDCAAAFSALRMALVGAPVLQYPDPNQPFILDTNASNGGIGAVLSQGGETG-ERVVAYYSRTLSRAERNYCVTRRELLAVVQGVRHFRHYLYGRKFLLRTDHASLTWL-LNFKEPK-GQLARWLEALQDYNFQIVHRAGRLHGNADALSRRP 295
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A8C5GTG0_9TELE (Ribonuclease H n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5GTG0_9TELE) HSP 1 Score: 192 bits (487), Expect = 8.610e-55 Identity = 110/248 (44.35%), Postives = 150/248 (60.48%), Query Frame = 1 Query: 1 ETLQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKKGATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSRAP 744 E L+ + AG+ GKC F E FLGH VS AG D+ A+R++PTP + LR FLG+ YYR FV +ST AP+ LL+K ++ G ++ AA + + L + P L P+ + FIL TDAS+TG GAV+SQ G ER VA+ SRT +E Y VT RE LAV+ A +H + G P + TDHAALKWL +S +EP G+++RW+ +LQ F ++HRAG +AD+LSR P Sbjct: 73 EVLERINRAGLKLHPGKCKFMRQEISFLGHRVSGAGIMTEPDKVAAVRDWPTPTDVHQLRSFLGLASYYRRFVEGFSTIGAPMFDLLRKDRPYVWGPQQDAAFRELKQALCKDPVLVAPNAALPFILDTDASNTGLGAVLSQLTPGG-ERVVAYHSRTLDKSEKNYCVTRRELLAVIDAVNHFKHILCGLPFTIRTDHAALKWL-MSFKEPE-GQVARWIEQLQAFQFTIQHRAGESHTNADSLSRRP 317
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A7D9D6G1_PARCT (Transposon Ty3-G Gag-Pol poly n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6G1_PARCT) HSP 1 Score: 199 bits (505), Expect = 1.150e-54 Identity = 107/249 (42.97%), Postives = 151/249 (60.64%), Query Frame = 1 Query: 1 ETLQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKKGATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSRAPL 747 + LQA+ AG+ K KC F DFLG +SAAG P + + +A+R +PTP N LRRFLG+ YYR F+ +S A PL L +KG + + Q A + + L AP LA+PD + ++IL+TDASD G GAV++Q DE E+ V+F S+ FS AE ++ TE+E AVV A + ++ GR ++TDH ALKWL + P G+L+RW+ +L+E+ + H M HADALSRAP+ Sbjct: 337 DVLQAIDRAGLRLKLSKCSFAKPSVDFLGFTISAAGLAPNVTKVEAIRAFPTPQNLTELRRFLGMASYYRRFISGFSDIAGPLHRLTQKGVRFDWDKNCQRAFEQLKEQLISAPVLAFPDLNGDYILYTDASDVGVGAVLTQKDENEEEKVVSFASKAFSGAEKNWTTTEKEAFAVVWALQYFHPYVYGRKVTIYTDHKALKWLR-DIKHPN-GKLARWILKLEEYDYTIEHLPNTKMQHADALSRAPV 583
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Match: A0A7D9IQQ8_PARCT (Transposon Ty3-G Gag-Pol poly n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IQQ8_PARCT) HSP 1 Score: 199 bits (505), Expect = 1.370e-54 Identity = 108/249 (43.37%), Postives = 151/249 (60.64%), Query Frame = 1 Query: 1 ETLQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYPTPANTAALRRFLGITGYYRSFVPNYSTTAAPLTSLLKKGATWMCGEKEQAAMKAITGTLSRAPSLAYPDTSKEFILFTDASDTGAGAVVSQNDEAGTERPVAFLSRTFSAAETRYSVTERECLAVVLACRAVRHWILGRPTVVFTDHAALKWLAVSGREPTTGRLSRWLAELQEFSLHVRHRAGRLMVHADALSRAPL 747 + LQA+ AG+ K KC F DFLG VSAAG P + + +A+R +PTP N LRRFLG+ YYR F+ +S A PL L +KG + + Q A + + L AP LA+PD + ++IL+TDASD G GAV++Q DE E+ V+F S+ FS AE ++ TE+E AVV A + ++ GR ++TDH ALKWL + P G+L+RW+ +L+E+ + H M HADALSRAP+ Sbjct: 796 DVLQAIDRAGLRLKLSKCSFAKPSVDFLGFTVSAAGLAPNVTKVEAIRAFPTPQNLTELRRFLGMASYYRRFISGFSDIAGPLHRLTQKGVRFDWDKNCQRAFEQLKEQLISAPVLAFPDLNGDYILYTDASDVGIGAVLTQKDENEEEKVVSFASKAFSGAEKNWTTTEKEAFAVVWALQYFHPYVYGRKVTIYTDHKALKWLR-DIKHPN-GKLARWILKLEEYDYTIEHLPNTKMQHADALSRAPV 1042 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79968.18752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig79968.18752.1 >prot_M-pyrifera_M_contig79968.18752.1 ID=prot_M-pyrifera_M_contig79968.18752.1|Name=mRNA_M-pyrifera_M_contig79968.18752.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=249bp ETLQALRCAGVAAKAGKCMFGVAEADFLGHHVSAAGYTPLLDRTKAMREYback to top mRNA from alignment at M-pyrifera_M_contig79968:209..955- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig79968.18752.1 ID=mRNA_M-pyrifera_M_contig79968.18752.1|Name=mRNA_M-pyrifera_M_contig79968.18752.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=747bp|location=Sequence derived from alignment at M-pyrifera_M_contig79968:209..955- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig79968:209..955- >mRNA_M-pyrifera_M_contig79968.18752.1 ID=mRNA_M-pyrifera_M_contig79968.18752.1|Name=mRNA_M-pyrifera_M_contig79968.18752.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1494bp|location=Sequence derived from alignment at M-pyrifera_M_contig79968:209..955- (Macrocystis pyrifera P11B4 male)back to top |