mRNA_M-pyrifera_M_contig7982.18727.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7982.18727.1
Unique NamemRNA_M-pyrifera_M_contig7982.18727.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7982.18727.1 vs. uniprot
Match: A0A6H5KV87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV87_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 1.300e-80
Identity = 128/188 (68.09%), Postives = 158/188 (84.04%), Query Frame = 1 
Query:   34 FNQQIAQYRGKLPDQQLTELAVSHFEDQLAKSQHQVLAGMGISLEDMEDASVYYEEQGDTQVKEQMRMLKKMYQAVSNAPAMEQAAPVPSDMTVEKMVTVVTAFFEASNGVIRSVVEELLAEGKSLTDPNTSMEMTVLLQQRNGPATDAAIKPFNLDSATIGPAMEKFQDHPEIQNAIRVGGEQQREM 597
            FNQQIAQYRGK+P+QQLT+LAV HFED LAK+Q QV  GMGISLEDMEDAS YYEE+GD QVKEQ+R LK +Y  VSN P  E+   +P D+TVEKMVTVVTAFF+ASN V+ SVV+ELLA+G+ ++ P T+M+M++++Q+RNGPATD AIK FNL+S TIGPAMEKFQ+HPEI+ AI VG E+Q ++
Sbjct:  194 FNQQIAQYRGKVPEQQLTDLAVGHFEDSLAKTQAQVSVGMGISLEDMEDASKYYEEKGDPQVKEQLRHLKHLYLTVSNLPTDEEEPELPDDLTVEKMVTVVTAFFKASNNVVESVVQELLAKGEDISSPETAMKMSMIIQERNGPATDEAIKRFNLNSTTIGPAMEKFQEHPEIKTAIMVGSEEQHQI 381
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BLAST of mRNA_M-pyrifera_M_contig7982.18727.1 vs. uniprot
Match: D7FYT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYT1_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 9.250e-78
Identity = 122/188 (64.89%), Postives = 154/188 (81.91%), Query Frame = 1 
Query:   34 FNQQIAQYRGKLPDQQLTELAVSHFEDQLAKSQHQVLAGMGISLEDMEDASVYYEEQGDTQVKEQMRMLKKMYQAVSNAPAMEQAAPVPSDMTVEKMVTVVTAFFEASNGVIRSVVEELLAEGKSLTDPNTSMEMTVLLQQRNGPATDAAIKPFNLDSATIGPAMEKFQDHPEIQNAIRVGGEQQREM 597
            FNQQI QYRGK+P+Q LT+LAV HFED LAK+Q Q+  GMGISLEDMEDAS YYEE+GD QVKEQ+R LK +Y  VSN P  E+   +P D+TVEKMVTVVTAFF+ASN VI SVV+ELLA+G  +T+P T+M+M++ +Q+++GPATD AIK FNL+S TIGPAM+KF++H EI+ AI VG E+Q ++
Sbjct:   35 FNQQIVQYRGKVPEQHLTDLAVGHFEDSLAKTQAQISVGMGISLEDMEDASKYYEEKGDQQVKEQLRHLKNLYLTVSNLPTDEEEPELPDDLTVEKMVTVVTAFFKASNNVIESVVQELLAKGGDVTNPETAMKMSMAIQEKSGPATDEAIKRFNLNSTTIGPAMDKFREHEEIKTAIMVGSEEQHQI 222
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BLAST of mRNA_M-pyrifera_M_contig7982.18727.1 vs. uniprot
Match: A0A835ZBD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.700e-19
Identity = 55/184 (29.89%), Postives = 106/184 (57.61%), Query Frame = 1 
Query:   43 QIAQYRGKLPDQQLTELAVSHFEDQLAKSQHQVLAGMGISLEDMEDASVYYEEQGDTQVKEQMRMLKKMYQAVSNAPAMEQAAPVPSDMTVEKMVTVVTAFFEASNGVIRSVVEELLAEGKSLTDPNTSMEMTV-LLQQRNGPATDAAIKPFNLDSATIGPAMEKFQDHPEIQNAIRVGGEQQR 591
            Q+AQYRG++P +QL ++ +  FEDQL + Q  +L   G + E++E A+ YY   GD  V+   + L++MY+AVS     + A  +P  +T + +   +  +F+ S  ++R +VE++   G+S+ +P    E+ +   ++++  ATDA +  + + S  +GPA+EKF+   ++        ++Q+
Sbjct:   75 QLAQYRGQVPREQLAQVMLQQFEDQLQQQQDALLKKWGYTEEELEAATEYYG--GDGDVRHGAQRLRRMYEAVSG----QSAGQLPRGLTEDTLCAALNDYFDVSIALMRRLVEDVTDRGQSVDNPLMMQEIMMRFTREQDAVATDA-LAAYGMHSEMVGPAIEKFKGSDKVMGTFAACQQRQQ 251
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BLAST of mRNA_M-pyrifera_M_contig7982.18727.1 vs. uniprot
Match: A0A6V1QE83_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QE83_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 1.090e-11
Identity = 53/177 (29.94%), Postives = 92/177 (51.98%), Query Frame = 1 
Query:   37 NQQIAQYRGKLPDQQLTELAVSHFEDQLAKSQHQVLAGMGISLEDMEDASVYYEEQGDTQVKEQMRMLKKMYQAVSNAPAMEQAAPVPSDMTVEKMVTVVTAFFEASNGVIRSVVEELLAEGKSLTDPNTSMEMTVLLQQRNGPATDA-AIKPFN---LDSATIGPAMEKFQDHPEI 555
            +QQ+      LP++++       FE  L K + QVL       +++E+A+ Y+EEQGD +VK  +R L+ MY+A+S     ++A   P+D+T EK + ++  +F + +  +  +VEE  A  K +T  +  M+  V  Q       DA A+K      LD+      ++KF + PE+
Sbjct:   80 SQQMKAAGQALPEKEIHAYLSQEFESHLKKVEEQVLEKYKTDEDELEEATEYFEEQGDEEVKAVVRQLEVMYEAMSGTAKKKEA---PADLTREKFLALLPVYFGSMSKALAGLVEE--AARKGITPQSPEMQQLVATQ------LDARALKTMQEQGLDNEVFNAGLQKFHEDPEV 245
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7982.18727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KV87_9PHAE1.300e-8068.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYT1_ECTSI9.250e-7864.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZBD1_9STRA9.700e-1929.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1QE83_HETAK1.090e-1129.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7982contigM-pyrifera_M_contig7982:9069..11975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002400.1
Exons5
Model size600
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7982.18727.1prot_M-pyrifera_M_contig7982.18727.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7982 9069..11975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.983488-CDS-M-pyrifera_M_contig7982:9068..91581622816701.983488-CDS-M-pyrifera_M_contig7982:9068..9158Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 9069..9158 -
1692278128.5244622-CDS-M-pyrifera_M_contig7982:9068..91581692278128.5244622-CDS-M-pyrifera_M_contig7982:9068..9158Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 9069..9158 -
1622816701.997336-CDS-M-pyrifera_M_contig7982:9622..97331622816701.997336-CDS-M-pyrifera_M_contig7982:9622..9733Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 9623..9733 -
1692278128.5375993-CDS-M-pyrifera_M_contig7982:9622..97331692278128.5375993-CDS-M-pyrifera_M_contig7982:9622..9733Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 9623..9733 -
1622816702.008616-CDS-M-pyrifera_M_contig7982:10294..104771622816702.008616-CDS-M-pyrifera_M_contig7982:10294..10477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 10295..10477 -
1692278128.549131-CDS-M-pyrifera_M_contig7982:10294..104771692278128.549131-CDS-M-pyrifera_M_contig7982:10294..10477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 10295..10477 -
1622816702.0229492-CDS-M-pyrifera_M_contig7982:11135..112131622816702.0229492-CDS-M-pyrifera_M_contig7982:11135..11213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 11136..11213 -
1692278128.560609-CDS-M-pyrifera_M_contig7982:11135..112131692278128.560609-CDS-M-pyrifera_M_contig7982:11135..11213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 11136..11213 -
1622816702.035954-CDS-M-pyrifera_M_contig7982:11837..119751622816702.035954-CDS-M-pyrifera_M_contig7982:11837..11975Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 11838..11975 -
1692278128.5744193-CDS-M-pyrifera_M_contig7982:11837..119751692278128.5744193-CDS-M-pyrifera_M_contig7982:11837..11975Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 11838..11975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7982.18727.1

>prot_M-pyrifera_M_contig7982.18727.1 ID=prot_M-pyrifera_M_contig7982.18727.1|Name=mRNA_M-pyrifera_M_contig7982.18727.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
MPDAFFDFQAGFNQQIAQYRGKLPDQQLTELAVSHFEDQLAKSQHQVLAG
MGISLEDMEDASVYYEEQGDTQVKEQMRMLKKMYQAVSNAPAMEQAAPVP
SDMTVEKMVTVVTAFFEASNGVIRSVVEELLAEGKSLTDPNTSMEMTVLL
QQRNGPATDAAIKPFNLDSATIGPAMEKFQDHPEIQNAIRVGGEQQREM*
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mRNA from alignment at M-pyrifera_M_contig7982:9069..11975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7982.18727.1 ID=mRNA_M-pyrifera_M_contig7982.18727.1|Name=mRNA_M-pyrifera_M_contig7982.18727.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2907bp|location=Sequence derived from alignment at M-pyrifera_M_contig7982:9069..11975- (Macrocystis pyrifera P11B4 male)
ATGCCCGATGCTTTTTTCGATTTTCAGGCAGGCTTTAACCAACAAATAGC
CCAGTACAGAGGGAAATTGCCGGACCAACAGCTTACGGAGCTGGCCGTCA
GCCATTTTGAGGATCAGCTCGCCAAGAGTCAGCACCAGGTGGGCATCGCT
GGCGCTGTGACGATGCGAACGTCGCACAGAATAACACTATCCATAGATAG
ACCTGTGAGGTGATATTATACAACCAGTTAATAGTAAAGCCCAGTGTCTA
ATACTGACGTTAGTTTTAGTATCTACTGCCTGCACACTCACATAGAGTGC
GAGGTTGGGGGCGATTTGGAGCGGGAGGTATGCCGCTATCAGCAGGAAGC
TTTCTGGACACCTCTCGCTTTCTTACGTGTACATATATACCCAAAGCTGC
CAAAACTGCAGAACGGGGAGGAAGGTCTCGTGGCTCGTATATCGTAATCA
CCGGTGGCAGTACACGGAGGAAGGTCTCGTGGCTCATACCACTCGCCGAT
GGTGTTGCACGTTGTACCTCTCAGATGCTGTGGGGCTCCAGTCCCCTTTT
CGGCCTGCGGGCGACCTCGATCGCATGTCTGCTGGACCGGCAAGACACCA
ACCGTACAACACGATGTCGCCATCCCTTTCGATTTTTGCAGTGTCTCCTT
GGCAAGAGGTAGTTTTTGGTACGGACACCAGTACAGTTGAAGGTGTTTCC
CGTATTCGAACACTTGTGGCCGCGCGCCGATCGAATGCACCTGTTGCATT
GTCCCGTTTCAGGTTCTTGCTGGTATGGGTATTTCGTTGGAGGACATGGA
AGATGCCAGCGTATACTACGAAGAGCAAGGGGACACGCAGGTACATGGCC
TTTTCACCCTCGCGACGCAAGCGTCCCAGTAGTCGTGCTTGTTTCTTTTG
CCCCGCTTGTGTCGTCATGCTCGTACTCAAGTCTTACTCCGTATAAACAT
ACCTGGTAGACGCCTGCGTTTCGATCCAGCCCAGGATGGCACAGCAGGAC
CATAGGTAGCAAGCAGCATAGTGGAAAGTTGCTATCACGTGGAAAAAGCC
TTCCTGCTCACAGCGTTTCCCCGCCCGCCACCTTCTGGAAGTTGCATTCG
CGTTGGCGTGTCATTGTGTCATTGATTGTATCCACCAGGTATAACGGTGG
CGTTTTACGGTTACGAGGTGGACTTGCGTTCGTGGTTTCGCTGATCGCAA
GTGACAGAAAAATCTTCTTCGATATATTCGGACATTGCCACGCGAGAAAA
ATTGCGAGCGGCAGAGAGACAGACAGTGAAGGCTTGGTATCGCGGGGTGG
GGGGGGGCGCAGTCTGTTCCTTGGCGTTGATAAAATAGGTACTAAAATAG
TGTGAAATGCGAAAAATAAGTCATCGAACAGCTTTTTTACCTTGACCCAC
GGGTCATTCTCATTTTTGTTGAATATATCGGTGCTTCGTGTGTACCAGAT
ACCAGGTTTTCAATCGTTTTAACTTGGCCTATTTTTTCCTCTACAAAGGT
GAAGGAGCAGATGAGGATGCTTAAGAAAATGTATCAGGCCGTTTCGAACG
CGCCTGCGATGGAACAAGCAGCTCCGGTCCCGAGCGATATGACTGTCGAG
AAAATGGTTACCGTCGTGACCGCGTTCTTCGAAGCGTCAAACGGTGTCAT
ACGGAGCGTTGTTGAGGAACTTCTTGCGGAGGTACGTAAGATGCCAATCC
GCGATTTTTTATGGGCGCCTTGCGGTGTTATTTTATCGCCGCATCGCGGT
TTGACCAATGACTACATGGTGGCAATAGCCCAAGAGTTCGCGCGATCCGG
CGACCGCCTACGTGTGTACATCGAGGGTATTCCTCTACGTGAGACTCGTG
GAGCTGCGGTTGGCGTGGTAGCCATGTGCACTTTCATGGTCGTGCCGAAC
TATACTAAGGATGTTTTGCAGTATCTACCATACTCGAAGAAAGGTCGGCT
GCTCTCCCGATTGGAATCGAAAAGTGGAGCGGACACGCAGTCTCAGTTCA
CGATCCAGCGGTCGCTGCTATTCTTGAAGCTGGTGGAGCGCGGGCGTGTC
AAAACAAAATCGTTCTATCTGCGATGCCAGACGAAAGGCAAAGCATGCTG
ACAATGGTCGCGACATTTCTTCTACTCTGATTAATAGAGAAGCCGTGGGT
TACACGATACCAACGGAATTTGGGGGCAAGTGGTGTTCCGCGTTGCTCGC
TTCTCAGTTGTTGTCAATCGTCCGTTATTTTGTGCCATCCAGGGAAAGAG
CCTTACCGACCCTAACACATCAATGGAGATGACCGTGCTCTTACAGCAAA
GGAATGGACCGGCAACAGATGCGGCCATCAAGCCCTTCAACTTGGACTCT
GCGGTGAGTGCACTCAGATGCTTACTTGGCTTTGCTTCGGTGGTGACTAT
AGCGAGGGTATGTACACGTTTCTTAGATTTCGGCATGTTCAGTACCGGGT
TCCGGACTTTTGATCGACGAGGAAGTTAGTTGGTGTGAACCAGGAGTTTT
CGGCAGAGGTCCGAACGGAAGTTTGTGCTTTCGGCAGGTTATCCTTGCGC
ACTAGGACACAACCGTTGCTGGCAGCCGCATACCGCCTTCAGCTTTTCAT
ACTTTTGAAGTATGGTTGCCAAGCCGCGACGTGAGCAAGATGTAGTGTAG
TTGGCTATGAGCGCGGTACGCTTTCTACATCATCGTGATAGCTCTAAGAG
TACAAGTGATTGTCCGCGGAAGACGAAATAACGGTGGTCATAACGGTATT
TCAAGAACATTTCCGATGGTTCATAACTCCGCGTCCCTTCCCACCGCTCC
CCCCGTGTAATCTTCAGACGATTGGGCCTGCAATGGAAAAGTTCCAGGAC
CACCCCGAGATCCAAAATGCGATTCGAGTGGGAGGCGAGCAGCAACGCGA
AATGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7982:9069..11975-

>mRNA_M-pyrifera_M_contig7982.18727.1 ID=mRNA_M-pyrifera_M_contig7982.18727.1|Name=mRNA_M-pyrifera_M_contig7982.18727.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig7982:9069..11975- (Macrocystis pyrifera P11B4 male)
ATGCCCGATGCTTTTTTCGATTTTCAGGCAGGCTTTAACCAACAAATAGC
CCAGTACAGAGGGAAATTGCCGGACCAACAGCTTACGGAGCTGGCCGTCA
GCCATTTTGAGGATCAGCTCGCCAAGAGTCAGCACCAGATGCCCGATGCT
TTTTTCGATTTTCAGGCAGGCTTTAACCAACAAATAGCCCAGTACAGAGG
GAAATTGCCGGACCAACAGCTTACGGAGCTGGCCGTCAGCCATTTTGAGG
ATCAGCTCGCCAAGAGTCAGCACCAGGTTCTTGCTGGTATGGGTATTTCG
TTGGAGGACATGGAAGATGCCAGCGTATACTACGAAGAGCAAGGGGACAC
GCAGGTTCTTGCTGGTATGGGTATTTCGTTGGAGGACATGGAAGATGCCA
GCGTATACTACGAAGAGCAAGGGGACACGCAGGTGAAGGAGCAGATGAGG
ATGCTTAAGAAAATGTATCAGGCCGTTTCGAACGCGCCTGCGATGGAACA
AGCAGCTCCGGTCCCGAGCGATATGACTGTCGAGAAAATGGTTACCGTCG
TGACCGCGTTCTTCGAAGCGTCAAACGGTGTCATACGGAGCGTTGTTGAG
GAACTTCTTGCGGAGGTGAAGGAGCAGATGAGGATGCTTAAGAAAATGTA
TCAGGCCGTTTCGAACGCGCCTGCGATGGAACAAGCAGCTCCGGTCCCGA
GCGATATGACTGTCGAGAAAATGGTTACCGTCGTGACCGCGTTCTTCGAA
GCGTCAAACGGTGTCATACGGAGCGTTGTTGAGGAACTTCTTGCGGAGGG
AAAGAGCCTTACCGACCCTAACACATCAATGGAGATGACCGTGCTCTTAC
AGCAAAGGAATGGACCGGCAACAGATGCGGCCATCAAGCCCTTCAACTTG
GACTCTGCGGGAAAGAGCCTTACCGACCCTAACACATCAATGGAGATGAC
CGTGCTCTTACAGCAAAGGAATGGACCGGCAACAGATGCGGCCATCAAGC
CCTTCAACTTGGACTCTGCGACGATTGGGCCTGCAATGGAAAAGTTCCAG
GACCACCCCGAGATCCAAAATGCGATTCGAGTGGGAGGCGAGCAGCAACG
CGAAATGTGAACGATTGGGCCTGCAATGGAAAAGTTCCAGGACCACCCCG
AGATCCAAAATGCGATTCGAGTGGGAGGCGAGCAGCAACGCGAAATGTGA
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