mRNA_M-pyrifera_M_contig79767.18716.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79767.18716.1
Unique NamemRNA_M-pyrifera_M_contig79767.18716.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: UPI001F5C3544 (VAMP-like protein YKT61 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C3544)

HSP 1 Score: 94.7 bits (234), Expect = 3.260e-22
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            WR+ EED T  +  L  AL +YQ P EADK +K++  LD+TK +L +TID +LERGE+LD        LS +S+ FYK+A+KTNSCCTI
Sbjct:  122 WRTAEEDATQPWGYLDDALTRYQDPAEADKLLKIQRDLDETKIILHKTIDSVLERGERLDSLVAKSSDLSAASQIFYKQAKKTNSCCTI 210
[Close]
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: UPI00125E5F4D (VAMP-like protein YKT61 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E5F4D)

HSP 1 Score: 94.0 bits (232), Expect = 4.970e-22
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            WRS + D T  +  L  AL K+Q P EADK +K++  LD+TK +L +TID +LERGEKLD        LS +S+ FYK+A+KTN CCTI
Sbjct:  110 WRSAQSDSTQQWPYLNEALTKFQDPAEADKLLKIQRELDETKIILHKTIDSVLERGEKLDSLVDKSSDLSAASQMFYKQAKKTNQCCTI 198
[Close]
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: UPI0002C32D4C (VAMP-like protein YKT61 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C32D4C)

HSP 1 Score: 94.0 bits (232), Expect = 4.970e-22
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            WR+ +ED T  +  L  AL K+Q P EADK +K++  LD+TK +L +TID +L RGEKLD        LS +S+ FYK+A+KTNSCCTI
Sbjct:  110 WRTAQEDSTESWPYLNEALTKFQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSTASQMFYKQAKKTNSCCTI 198
[Close]
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: A0A812MQN2_9DINO (YKT61 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MQN2_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 5.740e-22
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            W+S  ED +     L  AL KYQKPEE DK ++V+ +LDDTK +LVQ+I+ +L +GE+L+        LSD SK FYK A  TNSCC I
Sbjct:   46 WKSATEDNSHPLPSLEEALAKYQKPEEVDKLLRVQRSLDDTKEILVQSIETVLAKGERLEKLVEQSEDLSDQSKMFYKSAAATNSCCLI 134
[Close]
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: M7ZBP7_TRIUA (VAMP-like protein YKT61 n=1 Tax=Triticum urartu TaxID=4572 RepID=M7ZBP7_TRIUA)

HSP 1 Score: 92.0 bits (227), Expect = 6.220e-22
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            WR+ E+  T  +  L  AL KYQ P EADK MK++  LD+TK +L +TID +L+RGE+LD        LS +S+ FYK+A+KTNSCCTI
Sbjct:   49 WRTAEDKATQHWQYLDDALAKYQDPAEADKLMKIQRDLDETKIILHKTIDSVLQRGERLDSLVEKSSDLSVASQMFYKQAKKTNSCCTI 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: A0A0A9TPD2_ARUDO (V-SNARE coiled-coil homology domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9TPD2_ARUDO)

HSP 1 Score: 90.5 bits (223), Expect = 9.710e-22
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            WR+ + D T  +  L  AL KYQ P EADK +K++  LD+TK +L +TID +L RGE+LD        LS +S+ FYK+A+KTNSCCTI
Sbjct:   14 WRTAKADATQPWQFLNDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVLARGERLDSLVEKSSDLSAASQMFYKQAKKTNSCCTI 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: C6SVB1_SOYBN (Uncharacterized protein n=6 Tax=Glycine subgen. Soja TaxID=1462606 RepID=C6SVB1_SOYBN)

HSP 1 Score: 93.2 bits (230), Expect = 9.910e-22
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            WR+ +ED T  +  L  AL K+Q P EADK MK++  LD+TK +L +TID +L RGEKLD        LS +S+ FYK+A+KTN CCTI
Sbjct:  110 WRNAQEDSTQPWPYLNEALAKFQDPAEADKLMKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTI 198
[Close]
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: A0A059CWV4_EUCGR (Uncharacterized protein n=6 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CWV4_EUCGR)

HSP 1 Score: 93.2 bits (230), Expect = 1.010e-21
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            WRS   D T  +  L  AL K+Q P EADK +K++  LD+TK +L +TID +LERGEKLD        LS SS+ FYK+A+KTN CCTI
Sbjct:  111 WRSSNSDSTESWPYLNEALTKFQDPAEADKLLKIQRELDETKIILHKTIDSVLERGEKLDSLVEKSSDLSASSQLFYKQAKKTNQCCTI 199
[Close]
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: A0A5P1E4H6_ASPOF (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E4H6_ASPOF)

HSP 1 Score: 93.2 bits (230), Expect = 1.640e-21
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            WRS + D++  +  L +AL KYQ P EADK +K++  LD+TK +L +TID +LERGEKLD        LS +S+ FYK+A+KTN CCTI
Sbjct:  133 WRSVQADVSEPWPYLENALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVLERGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTI 221
[Close]
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Match: A0A5J9VPD5_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9VPD5_9POAL)

HSP 1 Score: 91.7 bits (226), Expect = 2.540e-21
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 WRSCEEDMTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGEKLDXXXXXXXXLSDSSKRFYKEARKTNSCCTI 267
            WR+ + D+T  +  L  AL KYQ P EADK +K++  LD+TK +L +TID +L RGE+LD        LS +S+ FYK+A+KTNSCCTI
Sbjct:   91 WRAAKADVTEPWQYLNDALTKYQDPTEADKLLKIQRDLDETKIILHKTIDSMLARGERLDSLVAKSSDLSAASQMFYKQAKKTNSCCTI 179
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79767.18716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F5C35443.260e-2252.81VAMP-like protein YKT61 n=2 Tax=Lolium rigidum Tax... [more]
UPI00125E5F4D4.970e-2251.69VAMP-like protein YKT61 n=2 Tax=Ipomoea TaxID=4119... [more]
UPI0002C32D4C4.970e-2251.69VAMP-like protein YKT61 n=1 Tax=Fragaria vesca sub... [more]
A0A812MQN2_9DINO5.740e-2250.56YKT61 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
M7ZBP7_TRIUA6.220e-2251.69VAMP-like protein YKT61 n=1 Tax=Triticum urartu Ta... [more]
A0A0A9TPD2_ARUDO9.710e-2250.56V-SNARE coiled-coil homology domain-containing pro... [more]
C6SVB1_SOYBN9.910e-2251.69Uncharacterized protein n=6 Tax=Glycine subgen. So... [more]
A0A059CWV4_EUCGR1.010e-2152.81Uncharacterized protein n=6 Tax=Myrtoideae TaxID=1... [more]
A0A5P1E4H6_ASPOF1.640e-2151.69Uncharacterized protein n=2 Tax=Asparagus officina... [more]
A0A5J9VPD5_9POAL2.540e-2150.56Uncharacterized protein (Fragment) n=1 Tax=Eragros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79767contigM-pyrifera_M_contig79767:511..783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue5.2e-16
Seed eggNOG ortholog112098.XP_008607167.1
Preferred nameYKT6
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623,ko:K08516,ko:K18999
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04130,ko04138,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04130,map04138
KEGG ModuleM00001,M00003,M00165,M00167
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016409,GO:0016417,GO:0016482,GO:0016740,GO:0016746,GO:0016747,GO:0019706,GO:0019707,GO:0022406,GO:0030133,GO:0030425,GO:0030659,GO:0031090,GO:0031201,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0036477,GO:0042144,GO:0042147,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090174,GO:0097440,GO:0097441,GO:0097447,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0140096
EggNOG free text desc.SNAP receptor activity
EggNOG OGsCOG5143@1,KOG0861@2759
EC3.1.3.16,4.1.2.13
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03021,ko03036,ko04131,ko04147
Exons1
Model size273
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.141084-CDS-M-pyrifera_M_contig79767:510..7621622816701.141084-CDS-M-pyrifera_M_contig79767:510..762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79767 511..762 -
1692278127.9341712-CDS-M-pyrifera_M_contig79767:510..7621692278127.9341712-CDS-M-pyrifera_M_contig79767:510..762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79767 511..762 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.1556547-UTR-M-pyrifera_M_contig79767:762..7831622816701.1556547-UTR-M-pyrifera_M_contig79767:762..783Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79767 763..783 -
1692278127.9476445-UTR-M-pyrifera_M_contig79767:762..7831692278127.9476445-UTR-M-pyrifera_M_contig79767:762..783Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79767 763..783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79767.18716.1prot_M-pyrifera_M_contig79767.18716.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79767 511..762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79767.18716.1

>prot_M-pyrifera_M_contig79767.18716.1 ID=prot_M-pyrifera_M_contig79767.18716.1|Name=mRNA_M-pyrifera_M_contig79767.18716.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MTLDFAPLRSALEKYQKPEEADKFMKVRGALDDTKGVLVQTIDELLERGE
KLDDLLEKSKDLSDSSKRFYKEARKTNSCCTIA*
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mRNA from alignment at M-pyrifera_M_contig79767:511..783-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79767.18716.1 ID=mRNA_M-pyrifera_M_contig79767.18716.1|Name=mRNA_M-pyrifera_M_contig79767.18716.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig79767:511..783- (Macrocystis pyrifera P11B4 male)
TGGCGGAGTTGTGAGGAGGACATGACGTTGGATTTCGCTCCCTTGCGGAG
TGCTCTAGAAAAGTACCAGAAGCCGGAGGAGGCGGACAAGTTCATGAAGG
TGCGGGGCGCCTTGGATGACACCAAGGGCGTGCTGGTGCAGACGATAGAC
GAGCTCCTGGAGCGTGGGGAGAAGTTGGACGACTTGCTCGAAAAGTCAAA
GGACCTCTCAGACTCCTCCAAGCGGTTCTACAAGGAAGCCAGGAAAACAA
ACTCGTGTTGCACCATCGCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79767:511..783-

>mRNA_M-pyrifera_M_contig79767.18716.1 ID=mRNA_M-pyrifera_M_contig79767.18716.1|Name=mRNA_M-pyrifera_M_contig79767.18716.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig79767:511..783- (Macrocystis pyrifera P11B4 male)
ATGACGTTGGATTTCGCTCCCTTGCGGAGTGCTCTAGAAAAGTACCAGAA
GCCGGAGGAGGCGGACAAGTTCATGAAGGTGCGGGGCGCCTTGGATGACA
CCAAGGGCGTGCTGGTGCAGACGATAGACGAGCTCCTGGAGCGTGGGGAG
AAGTTGGACGACTTGCTCGAAAAGTCAAAGGACCTCTCAGACTCCTCCAA
GCGGTTCTACAAGGAAGCCAGGAAAACAAACTCGTGTTGCACCATCGCAT
AGATGACGTTGGATTTCGCTCCCTTGCGGAGTGCTCTAGAAAAGTACCAG
AAGCCGGAGGAGGCGGACAAGTTCATGAAGGTGCGGGGCGCCTTGGATGA
CACCAAGGGCGTGCTGGTGCAGACGATAGACGAGCTCCTGGAGCGTGGGG
AGAAGTTGGACGACTTGCTCGAAAAGTCAAAGGACCTCTCAGACTCCTCC
AAGCGGTTCTACAAGGAAGCCAGGAAAACAAACTCGTGTTGCACCATCGC
ATAG
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