mRNA_M-pyrifera_M_contig79754.18712.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79754.18712.1
Unique NamemRNA_M-pyrifera_M_contig79754.18712.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79754.18712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79754contigM-pyrifera_M_contig79754:2..832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size831
Cds size831
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.981371-CDS-M-pyrifera_M_contig79754:1..8321622816700.981371-CDS-M-pyrifera_M_contig79754:1..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79754 2..832 +
1692278127.8357162-CDS-M-pyrifera_M_contig79754:1..8321692278127.8357162-CDS-M-pyrifera_M_contig79754:1..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79754 2..832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79754.18712.1prot_M-pyrifera_M_contig79754.18712.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79754 2..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79754.18712.1

>prot_M-pyrifera_M_contig79754.18712.1 ID=prot_M-pyrifera_M_contig79754.18712.1|Name=mRNA_M-pyrifera_M_contig79754.18712.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=277bp
TGSELVRFDRVSGAAGGVPLALPSGMASHVPGDFARSADGHGLALVAGTG
PGDEYVFVIGANGAVVRVTDVGGEISPGGYLPEVAHGPFFALSADSSHVG
WRTVVPVPGGTTTEGWLQATGAATGAPLTGDELFLDTLDEIAPFAFFDAT
RLLMGVGELDGLAVEGIDAVDLFTVRLGEGGTPEFENLTLSSGVASPPFF
AKPLISPGGLRRIPGSDHLVVQDEKQNLLLIARPGGPPVVIEPAARKLRF
DVASGGHALLGIERDDPFDDMRVVRLD
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mRNA from alignment at M-pyrifera_M_contig79754:2..832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79754.18712.1 ID=mRNA_M-pyrifera_M_contig79754.18712.1|Name=mRNA_M-pyrifera_M_contig79754.18712.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=831bp|location=Sequence derived from alignment at M-pyrifera_M_contig79754:2..832+ (Macrocystis pyrifera P11B4 male)
ACCGGCTCCGAGCTGGTGCGCTTCGACCGCGTGAGCGGCGCGGCGGGCGG
AGTGCCGCTGGCGCTGCCGAGCGGCATGGCGAGCCACGTGCCCGGGGACT
TCGCGCGCTCGGCGGACGGCCACGGGCTGGCGCTGGTCGCCGGCACCGGC
CCGGGCGACGAGTACGTGTTCGTGATTGGTGCGAACGGCGCCGTCGTGCG
CGTGACCGACGTCGGCGGGGAGATCTCGCCGGGCGGCTACCTGCCCGAGG
TCGCCCACGGCCCGTTCTTCGCGCTCTCGGCTGACAGCAGCCACGTCGGG
TGGCGCACCGTGGTGCCGGTGCCGGGTGGCACGACGACCGAGGGCTGGCT
GCAAGCCACCGGCGCGGCGACGGGCGCACCGCTGACCGGCGACGAGCTGT
TCCTCGACACGCTCGACGAGATCGCGCCGTTCGCCTTCTTCGACGCGACG
CGGCTGTTGATGGGCGTCGGCGAGCTCGACGGGCTGGCGGTGGAGGGCAT
CGACGCGGTCGACCTCTTCACCGTCCGCCTCGGCGAGGGCGGCACCCCCG
AGTTCGAGAACTTGACGCTCAGCTCCGGCGTCGCCTCGCCGCCCTTCTTC
GCCAAGCCGCTGATCTCGCCGGGCGGCCTGCGGCGAATCCCTGGCAGCGA
CCACCTGGTCGTCCAGGACGAGAAGCAGAACCTGCTCCTGATCGCACGGC
CCGGTGGACCGCCCGTCGTGATCGAGCCGGCCGCGCGTAAGCTGCGCTTC
GACGTGGCGAGCGGGGGGCACGCGCTGCTCGGGATCGAGCGCGACGACCC
GTTCGACGACATGCGCGTCGTGCGGCTGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79754:2..832+

>mRNA_M-pyrifera_M_contig79754.18712.1 ID=mRNA_M-pyrifera_M_contig79754.18712.1|Name=mRNA_M-pyrifera_M_contig79754.18712.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1662bp|location=Sequence derived from alignment at M-pyrifera_M_contig79754:2..832+ (Macrocystis pyrifera P11B4 male)
ACCGGCTCCGAGCTGGTGCGCTTCGACCGCGTGAGCGGCGCGGCGGGCGG
AGTGCCGCTGGCGCTGCCGAGCGGCATGGCGAGCCACGTGCCCGGGGACT
TCGCGCGCTCGGCGGACGGCCACGGGCTGGCGCTGGTCGCCGGCACCGGC
CCGGGCGACGAGTACGTGTTCGTGATTGGTGCGAACGGCGCCGTCGTGCG
CGTGACCGACGTCGGCGGGGAGATCTCGCCGGGCGGCTACCTGCCCGAGG
TCGCCCACGGCCCGTTCTTCGCGCTCTCGGCTGACAGCAGCCACGTCGGG
TGGCGCACCGTGGTGCCGGTGCCGGGTGGCACGACGACCGAGGGCTGGCT
GCAAGCCACCGGCGCGGCGACGGGCGCACCGCTGACCGGCGACGAGCTGT
TCCTCGACACGCTCGACGAGATCGCGCCGTTCGCCTTCTTCGACGCGACG
CGGCTGTTGATGGGCGTCGGCGAGCTCGACGGGCTGGCGGTGGAGGGCAT
CGACGCGGTCGACCTCTTCACCGTCCGCCTCGGCGAGGGCGGCACCCCCG
AGTTCGAGAACTTGACGCTCAGCTCCGGCGTCGCCTCGCCGCCCTTCTTC
GCCAAGCCGCTGATCTCGCCGGGCGGCCTGCGGCGAATCCCTGGCAGCGA
CCACCTGGTCGTCCAGGACGAGAAGCAGAACCTGCTCCTGATCGCACGGC
CCGGTGGACCGCCCGTCGTGATCGAGCCGGCCGCGCGTAAGCTGCGCTTC
GACGTGGCGAGCGGGGGGCACGCGCTGCTCGGGATCGAGCGCGACGACCC
GTTCGACGACATGCGCGTCGTGCGGCTGGACACCGGCTCCGAGCTGGTGC
GCTTCGACCGCGTGAGCGGCGCGGCGGGCGGAGTGCCGCTGGCGCTGCCG
AGCGGCATGGCGAGCCACGTGCCCGGGGACTTCGCGCGCTCGGCGGACGG
CCACGGGCTGGCGCTGGTCGCCGGCACCGGCCCGGGCGACGAGTACGTGT
TCGTGATTGGTGCGAACGGCGCCGTCGTGCGCGTGACCGACGTCGGCGGG
GAGATCTCGCCGGGCGGCTACCTGCCCGAGGTCGCCCACGGCCCGTTCTT
CGCGCTCTCGGCTGACAGCAGCCACGTCGGGTGGCGCACCGTGGTGCCGG
TGCCGGGTGGCACGACGACCGAGGGCTGGCTGCAAGCCACCGGCGCGGCG
ACGGGCGCACCGCTGACCGGCGACGAGCTGTTCCTCGACACGCTCGACGA
GATCGCGCCGTTCGCCTTCTTCGACGCGACGCGGCTGTTGATGGGCGTCG
GCGAGCTCGACGGGCTGGCGGTGGAGGGCATCGACGCGGTCGACCTCTTC
ACCGTCCGCCTCGGCGAGGGCGGCACCCCCGAGTTCGAGAACTTGACGCT
CAGCTCCGGCGTCGCCTCGCCGCCCTTCTTCGCCAAGCCGCTGATCTCGC
CGGGCGGCCTGCGGCGAATCCCTGGCAGCGACCACCTGGTCGTCCAGGAC
GAGAAGCAGAACCTGCTCCTGATCGCACGGCCCGGTGGACCGCCCGTCGT
GATCGAGCCGGCCGCGCGTAAGCTGCGCTTCGACGTGGCGAGCGGGGGGC
ACGCGCTGCTCGGGATCGAGCGCGACGACCCGTTCGACGACATGCGCGTC
GTGCGGCTGGAC
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