mRNA_M-pyrifera_M_contig79731.18709.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79731.18709.1
Unique NamemRNA_M-pyrifera_M_contig79731.18709.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: D7G3T8_ECTSI (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T8_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 2.120e-78
Identity = 115/142 (80.99%), Postives = 130/142 (91.55%), Query Frame = 1
Query:    1 LRKSCSFPPLEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLRKLRDIKAADPRGMPAICAPEDTDFVHFPIVDCNVADDTKV 426
            LR++ SFP LE L++ID K   YLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGV+TFVCLQQEY++EGVTE+MWRSG+ALRPYFQD +QLL KL +++ ADPR +PAICAPE+TDFVHFPIVDCNVADDTKV
Sbjct:   54 LRRASSFPGLEALSSID-KAGRYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYQAEGVTEEMWRSGDALRPYFQDVVQLLAKLGELRRADPRSVPAICAPEETDFVHFPIVDCNVADDTKV 194          
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: A0A6H5L4A3_9PHAE (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A3_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 2.240e-75
Identity = 116/142 (81.69%), Postives = 130/142 (91.55%), Query Frame = 1
Query:    1 LRKSCSFPPLEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLRKLRDIKAADPRGMPAICAPEDTDFVHFPIVDCNVADDTKV 426
            LR++ SFP LE L++ID K   YLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGV+TFVCLQQEYR+EGVTE+MWRSG+ALRPYFQD +QLL KL +++ ADPR +PAICAPE+TDFVHFPIVDCNVADDTKV
Sbjct:   54 LRRASSFPGLEALSSID-KAGRYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAEGVTEEMWRSGDALRPYFQDVVQLLAKLGELRRADPRSVPAICAPEETDFVHFPIVDCNVADDTKV 194          
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: A0A7S3YH03_HETAK (Protein-tyrosine-phosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH03_HETAK)

HSP 1 Score: 136 bits (342), Expect = 4.060e-37
Identity = 77/145 (53.10%), Postives = 92/145 (63.45%), Query Frame = 1
Query:    4 RKS-CSFPPLEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLRKLRDIKAADPRGMPAICAPEDTDFVHFPIVDCNVADDTKVRAV 435
            RKS  SFP LE+L  I +  E Y+GPT ESNWV+PG LLVGAYP SM+D     +L  IL+  VTTFVCLQQEY  EGVTE MWRSGE LRPYF+DA+    +L         G+ A         +HFPI DC  ADD ++ A+
Sbjct:   17 RKSFSSFPTLEDLRDIAKHPEDYVGPTDESNWVIPGLLLVGAYPCSMDDVETWEILRGILVLKVTTFVCLQQEYVHEGVTEQMWRSGEYLRPYFKDAVGFAPRL---------GLDAASLS----LLHFPIEDCGTADDDRLAAL 148          
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: A0A813AT18_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AT18_9DINO)

HSP 1 Score: 135 bits (340), Expect = 2.440e-36
Identity = 74/140 (52.86%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   22 PPLEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLRKLRDIKAAD--PRGMPAICAPEDTDFVHFPIVDCNVADDTKVRAV 435
            PPLE   +ID   + Y+GPT ESNWV+P R+LVGAYP +  D  ++ +L +IL  GVTTFVCLQ EY+  GVTE+ WRSGE LRPY  DALQLL        AD  P G      P+  DFVH PIVDC    D KV ++
Sbjct:   48 PPLEAPVSIDP--DSYIGPTEESNWVIPSRMLVGAYPGATEDELNSEILTSILELGVTTFVCLQSEYQHHGVTEEQWRSGEKLRPYIFDALQLLETC----PADYFPEGRK----PDSLDFVHLPIVDCATVSDGKVLSL 177          
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: A0A5A8C9N1_CAFRO (TYR_PHOSPHATASE_2 domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C9N1_CAFRO)

HSP 1 Score: 120 bits (302), Expect = 6.520e-31
Identity = 66/140 (47.14%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   16 SFPPLEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLRKLRDIKAADPRGMPAICAPEDTD---FVHFPIVDCNVADDTKV 426
            + PPL     +D     Y GPT ESNWVL GRLLVGAYP +++D  +  +L +IL  G+TTFVCLQ EY+  GV+ + W +G  LRPY  DA++LL  +R    +        CAP+ T+   F+HFPIVDC+ A+DT V
Sbjct:   36 AVPPLPFSDLVDPT--YYRGPTEESNWVLHGRLLVGAYPGAVDDGQNDAILRSILELGITTFVCLQSEYQHRGVSREDWIAGTKLRPYIYDAVRLLPSIRWPSPSQ------CCAPKPTEGLHFLHFPIVDCSTANDTGV 167          
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: A0A7S3NIH7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIH7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.630e-29
Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 1
Query:   19 FPPLEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLRKLRDIKAADPRGMPAICAPEDTDFVHFPIVDCNVADDTKVRA 432
             PPLE +  I      Y GPT ESNW +PGRL+VGA+P  ++D  +A+LL  IL QG+TTFVCLQ+EY       D WR G ALRPYF  A+++  +L      DP          D  F+HF I DC+VA+D+ V A
Sbjct:   78 LPPLEPMRKIGANPTRYCGPTDESNWAIPGRLMVGAFPGMIDDVENANLLKNILNQGITTFVCLQREYNPRARESD-WRKGLALRPYFNSAVEICAEL------DPH--------RDLHFLHFGIQDCSVAEDSAVEA 200          
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: A0A7S2WTD1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WTD1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.820e-28
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   28 LEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLRKLRDIKAADPRGMPAICAPEDTDFVHFPIVDCNVADDTKV 426
            L     I+Q R +Y+GPT ESNWVLPG+LLVGAYPA ++D  H  LL +IL  GVTTFVCLQ+EY         WR+G  +RPY  DA ++ ++   +           C   +  F+H PI DC+V  D  V
Sbjct:   47 LPSFKEIEQHRGMYVGPTEESNWVLPGKLLVGAYPAEVDDVAHEKLLRSILQCGVTTFVCLQKEYDHSSTDPKEWRAGTKIRPYINDAYRITKQDNTL---------GTCRSSELSFLHVPIADCDVTSDQVV 170          
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: A0A8J2T0D3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0D3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.050e-28
Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   16 SFPPLEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLRKLRDIKAADPRGMPAICAPEDTDFVHFPIVDCNVADDTKVRA 432
            + PPLE    I Q+++ Y+GPT ESNWVLPGRL+VGA+P   +D  +  LL +IL  G+TTFVCLQ+EY  +   E  WRSG A+RPY+  A+ L        A   RG          +F+HF I DC+V +D  V A
Sbjct:   33 TLPPLESFQVISQRKQRYVGPTDESNWVLPGRLMVGAFPGVSDDRENDRLLNSILSCGITTFVCLQREYDPDA-PESAWRSGAAIRPYYPSAVALA-------ARHHRGRRL-------EFIHFGIEDCSVVEDDAVAA 156          
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: A0A2R5GPB8_9STRA (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPB8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.550e-26
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = 1
Query:   28 LEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLR-KLRDIKAADPRGMPAICAPEDTDFVHFPIVDCNVADDTKVRAV 435
            L E++ +++ R+ Y GPT ESNWV+PGRL+VGAYPA  +D  H  LL  IL  GVTTFVCLQ EY           +   +RPY +DA +L + + R+ +   P     +CA     F+H PIVDC V  D  VRA+
Sbjct:  225 LPEVSAVERDRKAYAGPTDESNWVIPGRLMVGAYPAEADDQSHDALLNAILECGVTTFVCLQAEYNHYAP------ATAPIRPYIRDAFRLCQMREREARQKSPNE---VCAASKLGFLHLPIVDCKVTGDEVVRAL 352          
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Match: A8I6I3_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8I6I3_CHLRE)

HSP 1 Score: 102 bits (255), Expect = 1.670e-24
Identity = 57/141 (40.43%), Postives = 80/141 (56.74%), Query Frame = 1
Query:    7 KSCSFPPLEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQLLRKLRDIKAADPRGMPAICAPEDTDFVHFPIVDCNVADDTKVR 429
            +S ++P L  L  +  K     GPT  SNW LPGR++ GAYPAS++D+    +L T+L  G+ TFVCLQ E       E  WR+G  LRPY +DA ++L K  +      +G P I   +  DF+H PI+D NV  D+ + 
Sbjct:    3 RSDAYPQLPPLPKLPAKEMA--GPTPWSNWALPGRVIAGAYPASLDDAETEKILTTMLELGINTFVCLQAEVNIN-TPEHAWRAGHGLRPYIKDAQKILSKAHE------QGNPKI-TQQKIDFLHLPIIDGNVTTDSAMN 133          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79731.18709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3T8_ECTSI2.120e-7880.99TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A6H5L4A3_9PHAE2.240e-7581.69TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A7S3YH03_HETAK4.060e-3753.10Protein-tyrosine-phosphatase (Fragment) n=1 Tax=He... [more]
A0A813AT18_9DINO2.440e-3652.86Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A5A8C9N1_CAFRO6.520e-3147.14TYR_PHOSPHATASE_2 domain-containing protein n=5 Ta... [more]
A0A7S3NIH7_9STRA3.630e-2946.38Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2WTD1_9STRA1.820e-2844.36Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8J2T0D3_9STRA7.050e-2845.32Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2R5GPB8_9STRA7.550e-2644.53TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A8I6I3_CHLRE1.670e-2440.43Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79731contigM-pyrifera_M_contig79731:138..572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue2.2e-62
Seed eggNOG ortholog2880.D7G3T8
Hectar predicted targeting categoryother localisation
EggNOG OGs2BVII@1,2S2A7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.866582-CDS-M-pyrifera_M_contig79731:137..5721622816700.866582-CDS-M-pyrifera_M_contig79731:137..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79731 138..572 -
1692278127.7965002-CDS-M-pyrifera_M_contig79731:137..5721692278127.7965002-CDS-M-pyrifera_M_contig79731:137..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79731 138..572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79731.18709.1prot_M-pyrifera_M_contig79731.18709.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79731 138..572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79731.18709.1

>prot_M-pyrifera_M_contig79731.18709.1 ID=prot_M-pyrifera_M_contig79731.18709.1|Name=mRNA_M-pyrifera_M_contig79731.18709.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
LRKSCSFPPLEELATIDQKREVYLGPTMESNWVLPGRLLVGAYPASMNDS
HHAHLLCTILLQGVTTFVCLQQEYRSEGVTEDMWRSGEALRPYFQDALQL
LRKLRDIKAADPRGMPAICAPEDTDFVHFPIVDCNVADDTKVRAV
back to top

mRNA from alignment at M-pyrifera_M_contig79731:138..572-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79731.18709.1 ID=mRNA_M-pyrifera_M_contig79731.18709.1|Name=mRNA_M-pyrifera_M_contig79731.18709.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig79731:138..572- (Macrocystis pyrifera P11B4 male)
CTCCGAAAATCCTGCTCCTTCCCGCCCCTCGAGGAGCTGGCGACCATCGA CCAGAAGCGAGAGGTTTACCTGGGACCCACGATGGAGTCTAACTGGGTGC TCCCTGGGAGGCTCCTGGTGGGTGCCTACCCGGCCTCCATGAACGACAGC CACCACGCACACCTGCTGTGCACGATTCTCCTTCAGGGGGTGACTACTTT CGTGTGCCTCCAGCAGGAGTATCGGTCGGAGGGGGTGACGGAGGACATGT GGAGGTCTGGCGAGGCTTTGAGGCCGTATTTTCAGGACGCTCTGCAGCTT CTCCGGAAGCTGCGAGACATCAAGGCCGCAGATCCGAGAGGGATGCCCGC CATCTGCGCCCCGGAGGACACGGACTTTGTGCATTTTCCGATCGTGGACT GCAACGTTGCTGATGACACCAAGGTGCGAGCTGTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig79731:138..572-

>mRNA_M-pyrifera_M_contig79731.18709.1 ID=mRNA_M-pyrifera_M_contig79731.18709.1|Name=mRNA_M-pyrifera_M_contig79731.18709.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig79731:138..572- (Macrocystis pyrifera P11B4 male)
CTCCGAAAATCCTGCTCCTTCCCGCCCCTCGAGGAGCTGGCGACCATCGA
CCAGAAGCGAGAGGTTTACCTGGGACCCACGATGGAGTCTAACTGGGTGC
TCCCTGGGAGGCTCCTGGTGGGTGCCTACCCGGCCTCCATGAACGACAGC
CACCACGCACACCTGCTGTGCACGATTCTCCTTCAGGGGGTGACTACTTT
CGTGTGCCTCCAGCAGGAGTATCGGTCGGAGGGGGTGACGGAGGACATGT
GGAGGTCTGGCGAGGCTTTGAGGCCGTATTTTCAGGACGCTCTGCAGCTT
CTCCGGAAGCTGCGAGACATCAAGGCCGCAGATCCGAGAGGGATGCCCGC
CATCTGCGCCCCGGAGGACACGGACTTTGTGCATTTTCCGATCGTGGACT
GCAACGTTGCTGATGACACCAAGGTGCGAGCTGTTCTCCGAAAATCCTGC
TCCTTCCCGCCCCTCGAGGAGCTGGCGACCATCGACCAGAAGCGAGAGGT
TTACCTGGGACCCACGATGGAGTCTAACTGGGTGCTCCCTGGGAGGCTCC
TGGTGGGTGCCTACCCGGCCTCCATGAACGACAGCCACCACGCACACCTG
CTGTGCACGATTCTCCTTCAGGGGGTGACTACTTTCGTGTGCCTCCAGCA
GGAGTATCGGTCGGAGGGGGTGACGGAGGACATGTGGAGGTCTGGCGAGG
CTTTGAGGCCGTATTTTCAGGACGCTCTGCAGCTTCTCCGGAAGCTGCGA
GACATCAAGGCCGCAGATCCGAGAGGGATGCCCGCCATCTGCGCCCCGGA
GGACACGGACTTTGTGCATTTTCCGATCGTGGACTGCAACGTTGCTGATG
ACACCAAGGTGCGAGCTGTT
back to top