mRNA_M-pyrifera_M_contig79705.18703.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79705.18703.1
Unique NamemRNA_M-pyrifera_M_contig79705.18703.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79705.18703.1 vs. uniprot
Match: A9V916_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V916_MONBE)

HSP 1 Score: 174 bits (441), Expect = 1.560e-46
Identity = 106/278 (38.13%), Postives = 155/278 (55.76%), Query Frame = 1 
Query:    1 GGHNHHNARVGLWIEGGRYENPGDDCSNFNSLVMNLEGVDVLTNTVTLR--APPIDPVGFETGDLDIIPGDLLDFWDRPNGKLLIRAKVASVST-------PPPLTNVTFSPSSPLPT--LPSTV---------EVFHFNRSATQLVIRNSAFINCRRIGILLHADRALISNNYFEGLGGGIVESWPDPDEGLCTTRCLIRNNIAIETNQLGRYAAPIWTTVFAVN---NSICHDDILVQNNTFLQGPGPFFRIHDASYVSFVANNITRCATDPSPVL 765
            GG NHH+ R+G WI  G +E+PGDD  + + LVM+++ V +   TV LR   P +     E G+L +  GD L F+D   G++L+RA + ++ T       P  L ++      P+PT  +P  +         +VF  +R+A +LV R +   N RR+G+L    +AL+ +N   GLGGG+VE +  P EGLC    L+RNN  + TNQL R AAPIW      N   +  CHD++ V+NNTF+ GPGP F +   + V+   N++ RC TD S  L
Sbjct:  410 GGGNHHSMRIGPWISDGLFESPGDDTCHVSGLVMSVDRV-INETTVALRPSVPDVFAAQVELGNLWLQVGDELSFYDHMTGRILLRAHIHALGTGGLVDGMPTTLAHL----DQPVPTGAVPGIIGGNFNATVTQVFDTSRTAERLVFRRNVLHNGRRVGLLAKGRQALVEHNTAVGLGGGLVELFNAPYEGLCAHSYLVRNNTCLYTNQLDRVAAPIWVERLPNNAQLDQFCHDNLTVENNTFVVGPGPIFLLDAIANVTLRDNHLVRCTTDHSAYL 682
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BLAST of mRNA_M-pyrifera_M_contig79705.18703.1 vs. uniprot
Match: A0A7V3T7Q6_9BACT (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V3T7Q6_9BACT)

HSP 1 Score: 155 bits (392), Expect = 1.690e-39
Identity = 102/268 (38.06%), Postives = 132/268 (49.25%), Query Frame = 1 
Query:    1 GGHNHHNARVGLWIEGGRYENPGDDCSNFNSLVMNLEGVDVLTNTVTLRAPPIDPVGFETGDLDIIPGDLLDFWDRPNGKLLIRAKVASVSTPPPLTNVTFS-------PSSP---------LPTLPSTVEVFHFNRSATQLVIRNSAFINCRRIGILLHADRALISNNYFEGLGGGIVESWPDPDEGLCTTRCLIRNNIAIETNQLGRYAAPIWTTVFAVNNSICHDDILVQNNTFLQGPGPFFRIHDASYVSFVANNITRCATDPS 756
            GGHNHHNAR+G WIEG  +EN GDD  + N+LVM +E              P D VG   G LDI PGD+L F++R  G+L+   KV +VS       VT         P  P         +P   S  +VF+ +R+  Q V RN+   N RR+G+L      LI NN FEGLGGG VE W  P EGL     ++R+N   +  QL R  A IW T+F   +   H ++L+  N     P P   +HD    + V NN    A   S
Sbjct:  528 GGHNHHNARLGPWIEGCTWENTGDDICHVNALVMGVEEKLAPDRIRLSLRNPYDVVGPSVG-LDIRPGDVLQFFNRAEGRLVSERKVVNVSKLEKSLEVTLDGDVGNIVPGRPGVKRAGLKKVPADDSITQVFNASRTCNQFVFRNNTVRNGRRVGVLAKGRGGLIENNTFEGLGGGAVELWNAPFEGLGAMDYVVRDNRISDCGQLAREHAAIWATMFKGGSDKLHRNLLITGNQITGFPNPAILLHDVQ-CAVVRNNCIVSAQQKS 793
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BLAST of mRNA_M-pyrifera_M_contig79705.18703.1 vs. uniprot
Match: A0A7C4QLZ2_9BACT (Beta_helix domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C4QLZ2_9BACT)

HSP 1 Score: 141 bits (356), Expect = 7.690e-35
Identity = 95/271 (35.06%), Postives = 126/271 (46.49%), Query Frame = 1 
Query:    1 GGHNHHNARVGLWIEGGRYENPGDDCSNFNSLVMNLEGVDVLTNTVTLRAPPIDPVGFETGDLDIIPGDLLDFWDRPNGKLLIRAKVASVSTPPPLTNVTFS-PSSPLPT---LPS------------TVEVFHFNRSATQLVIRNSAFINCRRIGILLHADRALISNNYFEGLGGGIVESWPDPDEGLCTTRCLIRNNIAIETNQLGRYAAPIWTTVFAVNNSICHDDILVQNNTFLQGPGPFFRIHDASYVSFVANNITRCATDPSPVL 765
            GG+NHHNAR G WIEG  +EN GDD  + N   M         + V     P D  G E   LD   GD L F++   G+LL   +VA V+     T V    P   + T   LPS              ++F+ +R   Q V RN+   N RRIG+L   +  LI  N FE LGGG VE W  P EGL     ++R+N  +   +L R  A IW T+F       H ++L++ N     P P   +HDA+ V    N IT  +    PV+
Sbjct:  377 GGNNHHNARTGPWIEGCLFENCGDDVCHVNGYAMAAASQPAPDSLVINLHQPYDQFGREAR-LDFRDGDRLLFYEEKTGRLLAERRVAGVTPQEKTTQVRLDRPLDGIKTGKLLPSKQANYAVLDDTAVTQIFNASRMCNQFVFRNNVARNSRRIGVLAKGNGGLIEGNLFENLGGGGVEFWNAPFEGLAAENYVVRDNRILNCGRLARKHAAIWATMFKTGGDQLHRNLLIERNEIAGFPPPAILLHDATNVVLRGNRITVASEAFEPVV 646
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79705.18703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A9V916_MONBE1.560e-4638.13Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7V3T7Q6_9BACT1.690e-3938.06Right-handed parallel beta-helix repeat-containing... [more]
A0A7C4QLZ2_9BACT7.690e-3535.06Beta_helix domain-containing protein n=1 Tax=Verru... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79705contigM-pyrifera_M_contig79705:17..781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size765
Cds size765
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.613655-CDS-M-pyrifera_M_contig79705:16..7811622816700.613655-CDS-M-pyrifera_M_contig79705:16..781Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79705 17..781 +
1692278127.666548-CDS-M-pyrifera_M_contig79705:16..7811692278127.666548-CDS-M-pyrifera_M_contig79705:16..781Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79705 17..781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79705.18703.1prot_M-pyrifera_M_contig79705.18703.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79705 17..781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79705.18703.1

>prot_M-pyrifera_M_contig79705.18703.1 ID=prot_M-pyrifera_M_contig79705.18703.1|Name=mRNA_M-pyrifera_M_contig79705.18703.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
GGHNHHNARVGLWIEGGRYENPGDDCSNFNSLVMNLEGVDVLTNTVTLRA
PPIDPVGFETGDLDIIPGDLLDFWDRPNGKLLIRAKVASVSTPPPLTNVT
FSPSSPLPTLPSTVEVFHFNRSATQLVIRNSAFINCRRIGILLHADRALI
SNNYFEGLGGGIVESWPDPDEGLCTTRCLIRNNIAIETNQLGRYAAPIWT
TVFAVNNSICHDDILVQNNTFLQGPGPFFRIHDASYVSFVANNITRCATD
PSPVL
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mRNA from alignment at M-pyrifera_M_contig79705:17..781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79705.18703.1 ID=mRNA_M-pyrifera_M_contig79705.18703.1|Name=mRNA_M-pyrifera_M_contig79705.18703.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=765bp|location=Sequence derived from alignment at M-pyrifera_M_contig79705:17..781+ (Macrocystis pyrifera P11B4 male)
GGTGGGCACAATCATCACAATGCTAGAGTTGGATTGTGGATTGAAGGTGG
TCGCTACGAGAATCCTGGTGATGATTGCTCCAATTTCAACTCTCTTGTCA
TGAACCTGGAAGGAGTTGATGTTCTTACAAACACTGTCACTCTTCGAGCT
CCTCCCATTGATCCCGTTGGCTTTGAAACTGGCGATCTTGACATTATCCC
GGGAGATTTGTTGGACTTTTGGGATCGCCCAAATGGCAAGCTGTTAATTC
GTGCCAAAGTTGCATCTGTTTCAACACCTCCACCACTGACCAATGTGACC
TTCTCCCCTTCCTCTCCCCTTCCCACTCTTCCTTCCACAGTGGAAGTATT
TCATTTCAATCGCAGCGCAACGCAATTGGTCATTCGGAACAGTGCATTCA
TCAATTGTAGGCGTATCGGCATCCTCTTGCATGCAGATCGTGCTCTCATC
TCCAACAACTACTTTGAAGGATTGGGTGGAGGGATTGTAGAATCTTGGCC
TGATCCTGATGAAGGGTTGTGCACCACAAGGTGTTTGATCCGAAACAACA
TTGCGATTGAGACAAATCAGCTTGGAAGGTATGCCGCACCGATTTGGACC
ACTGTGTTTGCGGTGAACAACTCCATTTGTCACGATGATATTCTTGTGCA
AAACAACACATTCCTCCAAGGACCTGGCCCATTCTTTCGAATCCACGATG
CATCGTATGTGTCCTTTGTTGCAAACAACATTACACGATGTGCCACTGAC
CCTTCCCCTGTCCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79705:17..781+

>mRNA_M-pyrifera_M_contig79705.18703.1 ID=mRNA_M-pyrifera_M_contig79705.18703.1|Name=mRNA_M-pyrifera_M_contig79705.18703.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig79705:17..781+ (Macrocystis pyrifera P11B4 male)
GGTGGGCACAATCATCACAATGCTAGAGTTGGATTGTGGATTGAAGGTGG
TCGCTACGAGAATCCTGGTGATGATTGCTCCAATTTCAACTCTCTTGTCA
TGAACCTGGAAGGAGTTGATGTTCTTACAAACACTGTCACTCTTCGAGCT
CCTCCCATTGATCCCGTTGGCTTTGAAACTGGCGATCTTGACATTATCCC
GGGAGATTTGTTGGACTTTTGGGATCGCCCAAATGGCAAGCTGTTAATTC
GTGCCAAAGTTGCATCTGTTTCAACACCTCCACCACTGACCAATGTGACC
TTCTCCCCTTCCTCTCCCCTTCCCACTCTTCCTTCCACAGTGGAAGTATT
TCATTTCAATCGCAGCGCAACGCAATTGGTCATTCGGAACAGTGCATTCA
TCAATTGTAGGCGTATCGGCATCCTCTTGCATGCAGATCGTGCTCTCATC
TCCAACAACTACTTTGAAGGATTGGGTGGAGGGATTGTAGAATCTTGGCC
TGATCCTGATGAAGGGTTGTGCACCACAAGGTGTTTGATCCGAAACAACA
TTGCGATTGAGACAAATCAGCTTGGAAGGTATGCCGCACCGATTTGGACC
ACTGTGTTTGCGGTGAACAACTCCATTTGTCACGATGATATTCTTGTGCA
AAACAACACATTCCTCCAAGGACCTGGCCCATTCTTTCGAATCCACGATG
CATCGTATGTGTCCTTTGTTGCAAACAACATTACACGATGTGCCACTGAC
CCTTCCCCTGTCCTTGGTGGGCACAATCATCACAATGCTAGAGTTGGATT
GTGGATTGAAGGTGGTCGCTACGAGAATCCTGGTGATGATTGCTCCAATT
TCAACTCTCTTGTCATGAACCTGGAAGGAGTTGATGTTCTTACAAACACT
GTCACTCTTCGAGCTCCTCCCATTGATCCCGTTGGCTTTGAAACTGGCGA
TCTTGACATTATCCCGGGAGATTTGTTGGACTTTTGGGATCGCCCAAATG
GCAAGCTGTTAATTCGTGCCAAAGTTGCATCTGTTTCAACACCTCCACCA
CTGACCAATGTGACCTTCTCCCCTTCCTCTCCCCTTCCCACTCTTCCTTC
CACAGTGGAAGTATTTCATTTCAATCGCAGCGCAACGCAATTGGTCATTC
GGAACAGTGCATTCATCAATTGTAGGCGTATCGGCATCCTCTTGCATGCA
GATCGTGCTCTCATCTCCAACAACTACTTTGAAGGATTGGGTGGAGGGAT
TGTAGAATCTTGGCCTGATCCTGATGAAGGGTTGTGCACCACAAGGTGTT
TGATCCGAAACAACATTGCGATTGAGACAAATCAGCTTGGAAGGTATGCC
GCACCGATTTGGACCACTGTGTTTGCGGTGAACAACTCCATTTGTCACGA
TGATATTCTTGTGCAAAACAACACATTCCTCCAAGGACCTGGCCCATTCT
TTCGAATCCACGATGCATCGTATGTGTCCTTTGTTGCAAACAACATTACA
CGATGTGCCACTGACCCTTCCCCTGTCCTT
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