mRNA_M-pyrifera_M_contig79703.18702.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79703.18702.1
Unique NamemRNA_M-pyrifera_M_contig79703.18702.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: A0A7S2HQA5_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQA5_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.750e-40
Identity = 75/108 (69.44%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:  529 EDTELTNYAAFSLAHLASNREFQVPIVKAGAVPPLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVKLLP 852
            ED E   Y+AF+LAHLASNR+ QV +V+ GA+ PLV+LM+V AEP  YAGLALLK+ DN+S HVA+A+ GG+QALLRL R R+TDDELQYKAALTVG+LASNA KL+P
Sbjct:   45 EDMECQEYSAFALAHLASNRDLQVQLVELGALKPLVSLMAVHAEPRHYAGLALLKLADNFSNHVAIAKEGGIQALLRLGRTRTTDDELQYKAALTVGNLASNAAKLMP 152
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: A0A7S2WWV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWV0_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.810e-40
Identity = 74/110 (67.27%), Postives = 90/110 (81.82%), Query Frame = 1 
Query:  523 SEEDTELTNYAAFSLAHLASNREFQVPIVKAGAVPPLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVKLLP 852
            S ED E   YAAF LAHLASNR+ QV +V+ GA+ PLV++M+V AEP  YAGLALLK+ DN+  HVA+A+ GG+QALLRL R R+TDDELQYKAALTVG+LASNAV ++P
Sbjct:    4 SLEDMECQEYAAFCLAHLASNRDLQVRLVELGALKPLVSMMAVQAEPRHYAGLALLKLADNFENHVAIAKEGGIQALLRLGRTRTTDDELQYKAALTVGNLASNAVAMMP 113
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: A0A7S0C944_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C944_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.670e-35
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:  532 DTELTNYAAFSLAHLASNREFQVPIVKAGAVPPLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVKL 846
            D+E  +Y+ F+LA LASNRE+QV +VK GAV PLV++M+  +EP  YAGLALLK+ DN+  H+ +AE GG++ALLRL R R TD+ELQYKAALTVG LASNAV +
Sbjct:   42 DSECQDYSTFALAFLASNREYQVKLVKIGAVRPLVSIMATNSEPKHYAGLALLKLADNFENHITIAEEGGIEALLRLGRNRVTDEELQYKAALTVGQLASNAVNI 146
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: A0A067C8H7_SAPPC (Vacuolar protein 8 n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C8H7_SAPPC)

HSP 1 Score: 131 bits (330), Expect = 9.620e-31
Identity = 63/96 (65.62%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:  565 LAHLASNREFQVPIVKAGAVPPLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVKLLP 852
            +AHLASNRE+QV  V  GA+ PL+A+MSV AEP  YAGLALLK+ DNY  H+ +AE GG+QALLR+ARARSTD+ELQYKA++++G LA+NA K++P
Sbjct: 1176 VAHLASNREYQVKFVNMGALRPLIAIMSVNAEPRHYAGLALLKLADNYENHIKIAEEGGIQALLRIARARSTDEELQYKASMSLGQLAANATKVMP 1271
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: A0A7S4K0F1_9STRA (Vacuolar protein 8 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0F1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.040e-30
Identity = 64/104 (61.54%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:  532 DTELTNYAAFSLAHLASNREFQVPIVKAGAVPPLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVK 843
            DTE   Y AF+LA LASNR++QVP+V+ GAV PLV++MS  AEP  YAGL+LL + +N+  H  +AE GG+QALL L R+R TD+ELQYKAALT+G LASNA++
Sbjct: 2117 DTECQEYGAFALAFLASNRDYQVPLVQMGAVRPLVSIMSTDAEPKHYAGLSLLSLANNFETHTTIAEEGGIQALLHLGRSRVTDEELQYKAALTIGQLASNAIQ 2220
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: A0A7S2XVB4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVB4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.620e-24
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:  652 GAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVKLLP 852
            GA P  YAGLALLK+ DN+  H+ +AE GG+QALLRL RARSTD+ELQYKAALTVGHLASNAVK+LP
Sbjct:    2 GAVPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVKMLP 68
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: A0A024G7B4_9STRA (Vacuolar protein 8 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G7B4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.080e-24
Identity = 55/107 (51.40%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:  529 EDTELTNYAAFSLAHLASNREFQVPIVKAGAVPPLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVKLL 849
            +D E  +YA+F LAHL+SNR++Q  +++ GA+ PL+A+++    P  YAGLALL++ DNY  H+ + E GGV+ALLRLAR RS D E+QYKA+ ++G LA NA + L
Sbjct: 3588 QDRECQDYASFILAHLSSNRQYQPLLLRGGALGPLIAMVTKEPYPKHYAGLALLQLADNYENHLQIVEKGGVEALLRLARIRSPDKEIQYKASKSLGQLAKNATEAL 3694
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: F0WEG1_9STRA (Vacuolar protein 8 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEG1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.100e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:  532 DTELTNYAAFSLAHLASNREFQVPIVKAGAVPPLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVKLL 849
            D E  +YA+F LAHL SNR++Q  ++  GA+ PLVA++     P  YAGLALLK+ DNY  H+ + E GGV+ALLRLAR+RS D E+QY+A+ ++G LA NA + L
Sbjct: 3574 DQECQDYASFILAHLCSNRQYQPLLLIGGALGPLVAMVLDKPHPKHYAGLALLKLADNYENHLKIVEEGGVEALLRLARSRSPDREIQYRASQSLGQLAKNATEAL 3679
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: A0A835Z6R1_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.940e-23
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  628 PLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVKLLP 852
            PLV++MS  AEP  YAGLALLK+ DN++ H+A+A  GG+QALLRL R+R TD+ELQYKAAL+VGH+ASNAV+LLP
Sbjct: 3905 PLVSMMSTAAEPRHYAGLALLKLADNFNNHLAIANEGGIQALLRLGRSRETDEELQYKAALSVGHMASNAVRLLP 3979
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BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Match: A0A812KVL6_9DINO (Vacuolar protein 8 (Fragment) n=5 Tax=Sar TaxID=2698737 RepID=A0A812KVL6_9DINO)

HSP 1 Score: 108 bits (270), Expect = 9.400e-23
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:  529 EDTELTNYAAFSLAHLASNREFQVPIVKAGAVPPLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQALLRLARARSTDDELQYKAALTVGHLASNAVKLLP 852
            ED E   YA+F++AHLASNRE+QVPIV+AGA+PPLVA+M+V AEP                              LRLAR+R+ D+ELQYKAALTVGHLASNAV+L+P
Sbjct: 3827 EDGETQEYASFAVAHLASNREYQVPIVRAGALPPLVAMMAVTAEPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLARSRAADEELQYKAALTVGHLASNAVRLVP 3934
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79703.18702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2HQA5_9STRA1.750e-4069.44Vacuolar protein 8 (Fragment) n=1 Tax=Dictyocha sp... [more]
A0A7S2WWV0_9STRA2.810e-4067.27Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0C944_9STRA3.670e-3562.86Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A067C8H7_SAPPC9.620e-3165.63Vacuolar protein 8 n=1 Tax=Saprolegnia parasitica ... [more]
A0A7S4K0F1_9STRA1.040e-3061.54Vacuolar protein 8 n=1 Tax=Odontella aurita TaxID=... [more]
A0A7S2XVB4_9STRA1.620e-2476.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A024G7B4_9STRA6.080e-2451.40Vacuolar protein 8 n=1 Tax=Albugo candida TaxID=65... [more]
F0WEG1_9STRA5.100e-2352.83Vacuolar protein 8 n=1 Tax=Albugo laibachii Nc14 T... [more]
A0A835Z6R1_9STRA6.940e-2369.33Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=3... [more]
A0A812KVL6_9DINO9.400e-2354.63Vacuolar protein 8 (Fragment) n=5 Tax=Sar TaxID=26... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79703contigM-pyrifera_M_contig79703:3..854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue2.2e-21
Seed eggNOG ortholog653948.CCA19593
Preferred nameKIF17
KEGG koko:K08332,ko:K10396,ko:K20198
KEGG Pathwayko04144,ko04728,map04144,map04728
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0008017,GO:0008092,GO:0015630,GO:0015631,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.nucleus-vacuole junction assembly
EggNOG OGsCOG5059@1,KOG0240@2759,KOG4224@1,KOG4224@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131,ko04147,ko04812
Exons1
Model size852
Cds size852
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.5809028-CDS-M-pyrifera_M_contig79703:2..8541622816700.5809028-CDS-M-pyrifera_M_contig79703:2..854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79703 3..854 +
1692278127.6528718-CDS-M-pyrifera_M_contig79703:2..8541692278127.6528718-CDS-M-pyrifera_M_contig79703:2..854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79703 3..854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79703.18702.1prot_M-pyrifera_M_contig79703.18702.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79703 3..854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79703.18702.1

>prot_M-pyrifera_M_contig79703.18702.1 ID=prot_M-pyrifera_M_contig79703.18702.1|Name=mRNA_M-pyrifera_M_contig79703.18702.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=284bp
LLFLCRFPDAEVQRYAATAVAALALGDHGGNKVRLVSEGASRPLVELLRF
PDVEVQRTASLAVACLVVGKKERPKLAIMGEEGLLPLVALCAAADTELAR
AATFAVGSLAESPDVRAKLVEVGAVGTLVEQGRVASDIEVRRNCGYFLAL
CSESQATHAEMVHEGALETLVAQVSEEDTELTNYAAFSLAHLASNREFQV
PIVKAGAVPPLVALMSVGAEPNAYAGLALLKICDNYSCHVAVAEAGGVQA
LLRLARARSTDDELQYKAALTVGHLASNAVKLLP
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mRNA from alignment at M-pyrifera_M_contig79703:3..854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79703.18702.1 ID=mRNA_M-pyrifera_M_contig79703.18702.1|Name=mRNA_M-pyrifera_M_contig79703.18702.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig79703:3..854+ (Macrocystis pyrifera P11B4 male)
TTACTGTTTCTTTGTCGCTTCCCAGACGCAGAAGTGCAACGATATGCTGC
AACAGCTGTTGCGGCGCTTGCACTTGGTGATCATGGTGGAAACAAGGTTC
GCTTGGTATCAGAAGGAGCATCACGCCCGTTGGTGGAACTTTTACGATTT
CCAGATGTGGAAGTACAACGCACTGCATCCTTGGCTGTGGCTTGTTTGGT
GGTGGGAAAGAAGGAACGACCAAAACTTGCAATTATGGGAGAAGAAGGTC
TGTTGCCATTGGTGGCATTATGTGCTGCAGCTGATACAGAACTGGCACGT
GCCGCTACGTTTGCTGTGGGTAGTCTTGCAGAGTCTCCTGATGTTCGTGC
AAAACTGGTTGAAGTTGGTGCTGTTGGCACTTTGGTGGAACAAGGACGTG
TTGCATCTGACATTGAAGTACGAAGAAATTGTGGATACTTTCTTGCATTG
TGCTCCGAATCCCAAGCAACGCATGCAGAAATGGTGCATGAAGGTGCATT
GGAAACTTTGGTTGCACAAGTCTCGGAAGAAGACACGGAACTCACAAACT
ATGCAGCCTTTTCCTTGGCACACTTGGCAAGCAACCGCGAATTCCAAGTT
CCCATTGTCAAAGCAGGTGCCGTACCACCTCTTGTTGCACTCATGTCTGT
TGGCGCAGAACCAAATGCATACGCTGGTCTGGCTCTCCTCAAAATTTGTG
ACAACTATTCTTGCCATGTTGCAGTTGCTGAAGCTGGTGGTGTGCAAGCA
CTCCTTCGTCTTGCACGTGCTCGATCTACAGATGATGAACTGCAGTACAA
AGCAGCGTTAACCGTCGGACACCTTGCCAGCAATGCTGTAAAACTTCTCC
CC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79703:3..854+

>mRNA_M-pyrifera_M_contig79703.18702.1 ID=mRNA_M-pyrifera_M_contig79703.18702.1|Name=mRNA_M-pyrifera_M_contig79703.18702.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1704bp|location=Sequence derived from alignment at M-pyrifera_M_contig79703:3..854+ (Macrocystis pyrifera P11B4 male)
TTACTGTTTCTTTGTCGCTTCCCAGACGCAGAAGTGCAACGATATGCTGC
AACAGCTGTTGCGGCGCTTGCACTTGGTGATCATGGTGGAAACAAGGTTC
GCTTGGTATCAGAAGGAGCATCACGCCCGTTGGTGGAACTTTTACGATTT
CCAGATGTGGAAGTACAACGCACTGCATCCTTGGCTGTGGCTTGTTTGGT
GGTGGGAAAGAAGGAACGACCAAAACTTGCAATTATGGGAGAAGAAGGTC
TGTTGCCATTGGTGGCATTATGTGCTGCAGCTGATACAGAACTGGCACGT
GCCGCTACGTTTGCTGTGGGTAGTCTTGCAGAGTCTCCTGATGTTCGTGC
AAAACTGGTTGAAGTTGGTGCTGTTGGCACTTTGGTGGAACAAGGACGTG
TTGCATCTGACATTGAAGTACGAAGAAATTGTGGATACTTTCTTGCATTG
TGCTCCGAATCCCAAGCAACGCATGCAGAAATGGTGCATGAAGGTGCATT
GGAAACTTTGGTTGCACAAGTCTCGGAAGAAGACACGGAACTCACAAACT
ATGCAGCCTTTTCCTTGGCACACTTGGCAAGCAACCGCGAATTCCAAGTT
CCCATTGTCAAAGCAGGTGCCGTACCACCTCTTGTTGCACTCATGTCTGT
TGGCGCAGAACCAAATGCATACGCTGGTCTGGCTCTCCTCAAAATTTGTG
ACAACTATTCTTGCCATGTTGCAGTTGCTGAAGCTGGTGGTGTGCAAGCA
CTCCTTCGTCTTGCACGTGCTCGATCTACAGATGATGAACTGCAGTACAA
AGCAGCGTTAACCGTCGGACACCTTGCCAGCAATGCTGTAAAACTTCTCC
CCTTACTGTTTCTTTGTCGCTTCCCAGACGCAGAAGTGCAACGATATGCT
GCAACAGCTGTTGCGGCGCTTGCACTTGGTGATCATGGTGGAAACAAGGT
TCGCTTGGTATCAGAAGGAGCATCACGCCCGTTGGTGGAACTTTTACGAT
TTCCAGATGTGGAAGTACAACGCACTGCATCCTTGGCTGTGGCTTGTTTG
GTGGTGGGAAAGAAGGAACGACCAAAACTTGCAATTATGGGAGAAGAAGG
TCTGTTGCCATTGGTGGCATTATGTGCTGCAGCTGATACAGAACTGGCAC
GTGCCGCTACGTTTGCTGTGGGTAGTCTTGCAGAGTCTCCTGATGTTCGT
GCAAAACTGGTTGAAGTTGGTGCTGTTGGCACTTTGGTGGAACAAGGACG
TGTTGCATCTGACATTGAAGTACGAAGAAATTGTGGATACTTTCTTGCAT
TGTGCTCCGAATCCCAAGCAACGCATGCAGAAATGGTGCATGAAGGTGCA
TTGGAAACTTTGGTTGCACAAGTCTCGGAAGAAGACACGGAACTCACAAA
CTATGCAGCCTTTTCCTTGGCACACTTGGCAAGCAACCGCGAATTCCAAG
TTCCCATTGTCAAAGCAGGTGCCGTACCACCTCTTGTTGCACTCATGTCT
GTTGGCGCAGAACCAAATGCATACGCTGGTCTGGCTCTCCTCAAAATTTG
TGACAACTATTCTTGCCATGTTGCAGTTGCTGAAGCTGGTGGTGTGCAAG
CACTCCTTCGTCTTGCACGTGCTCGATCTACAGATGATGAACTGCAGTAC
AAAGCAGCGTTAACCGTCGGACACCTTGCCAGCAATGCTGTAAAACTTCT
CCCC
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