mRNA_M-pyrifera_M_contig797.18701.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig797.18701.1
Unique NamemRNA_M-pyrifera_M_contig797.18701.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig797.18701.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 2.140e-51
Identity = 132/283 (46.64%), Postives = 160/283 (56.54%), Query Frame = 1 
Query:    1 DEPRSPLAHRPLFDWEKSLVKHVNAELSIRWSTSSDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTSGRRGRLRVPLGQIEDDGCCRPLDGVGVGXXXXXXXXXXXXXXXXXXVKTLPRKNPEAVPECLLGALLPPVRLSCLPLAFTPPKGGGGHPMG------AGLVDV-EGFATFGISERGEVEMGVGAGAEEEGGGMDALEGGWAATATVDSFLPISLLVRNPSPWPIEVDIQVTSRAEGSQT--SRVWGDGDDDSAEPGQIMWSGMPR 822
            DEPRSPL+ RPLFDWEKSL  H+  ELS+RWST+ +EA                                     W SGRRG +R+ L Q+ +DG C           XXXXXXXXXXXXX    +    ++PEAVPECLLG LLPPVRLSCLP AF P   GGG  +G       GL    EG    GI E G V++        EGGG+  +EG WAA  TVDSFLP+SL+V N S WPI+V ++VTS +EG +   S  WG+ D+D +  G +MWSGMPR
Sbjct:  664 DEPRSPLSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTASGGGVVPDPFTGEGTASAGGGEEG----WRSGRRGCVRIALDQVGEDGSCHRSS-------XXXXXXXXXXXXXAGVSRPSQPRHPEAVPECLLGVLLPPVRLSCLPCAFVPSVAGGGGGVGWSAAGAKGLFGAGEGAPRVGIDEAGRVQV--------EGGGIRDVEGAWAAQTTVDSFLPVSLVVHNSSRWPIDVLVEVTSTSEGREEGGSVCWGNEDEDDS--GHVMWSGMPR 925
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BLAST of mRNA_M-pyrifera_M_contig797.18701.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.650e-31
Identity = 79/155 (50.97%), Postives = 97/155 (62.58%), Query Frame = 1 
Query:  391 KNPEAVPECLLGALLPPVRLSCLPLAFTPPKGG----GGHPMGA----GLVDV-EGFATFGISERGEVEMGVGAGAEEEGGGMDALEGGWAATATVDSFLPISLLVRNPSPWPIEVDIQVTSRAEGSQT--SRVWGDGDDDSAEPGQIMWSGMPR 822
            ++PEAVPECL+G LLPPVRLSCLP AF P   G    GG    A    GL    EG    GI E G V++        EGGG+  +EG WAA  TVDSFLP+SL+V N S WPI+V ++VTS +EG +   S  WG+ D+D +  G +MWSGMPR
Sbjct: 1493 RHPEAVPECLVGVLLPPVRLSCLPCAFVPGVAGVAAVGGVXCSAVGANGLFGAGEGVPRVGIDEAGRVQV--------EGGGLREVEGAWAAQTTVDSFLPVSLVVHNSSRWPIDVIVEVTSTSEGREEEGSVYWGNADEDDS--GHVMWSGMPR 1637
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig797.18701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF7_ECTSI2.140e-5146.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H9_9PHAE2.650e-3150.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig797contigM-pyrifera_M_contig797:30689..31970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003870.1
Exons3
Model size840
Cds size840
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig797.18701.1prot_M-pyrifera_M_contig797.18701.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig797 30689..31970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.5172632-CDS-M-pyrifera_M_contig797:30688..308921622816700.5172632-CDS-M-pyrifera_M_contig797:30688..30892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig797 30689..30892 -
1692278127.6208925-CDS-M-pyrifera_M_contig797:30688..308921692278127.6208925-CDS-M-pyrifera_M_contig797:30688..30892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig797 30689..30892 -
1622816700.5320094-CDS-M-pyrifera_M_contig797:31262..317091622816700.5320094-CDS-M-pyrifera_M_contig797:31262..31709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig797 31263..31709 -
1692278127.6320043-CDS-M-pyrifera_M_contig797:31262..317091692278127.6320043-CDS-M-pyrifera_M_contig797:31262..31709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig797 31263..31709 -
1622816700.544808-CDS-M-pyrifera_M_contig797:31781..319701622816700.544808-CDS-M-pyrifera_M_contig797:31781..31970Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig797 31782..31970 -
1692278127.642102-CDS-M-pyrifera_M_contig797:31781..319701692278127.642102-CDS-M-pyrifera_M_contig797:31781..31970Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig797 31782..31970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig797.18701.1

>prot_M-pyrifera_M_contig797.18701.1 ID=prot_M-pyrifera_M_contig797.18701.1|Name=mRNA_M-pyrifera_M_contig797.18701.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=280bp
DEPRSPLAHRPLFDWEKSLVKHVNAELSIRWSTSSDEASAAAAAAAAAAA
AAVAAAGRPTLSGEGGGGGGGGGGGWTSGRRGRLRVPLGQIEDDGCCRPL
DGVGVGGGGRHSGGGGGGGGGGGGVKTLPRKNPEAVPECLLGALLPPVRL
SCLPLAFTPPKGGGGHPMGAGLVDVEGFATFGISERGEVEMGVGAGAEEE
GGGMDALEGGWAATATVDSFLPISLLVRNPSPWPIEVDIQVTSRAEGSQT
SRVWGDGDDDSAEPGQIMWSGMPRCENWF*
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mRNA from alignment at M-pyrifera_M_contig797:30689..31970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig797.18701.1 ID=mRNA_M-pyrifera_M_contig797.18701.1|Name=mRNA_M-pyrifera_M_contig797.18701.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1282bp|location=Sequence derived from alignment at M-pyrifera_M_contig797:30689..31970- (Macrocystis pyrifera P11B4 male)
GACGAACCCAGGTCACCGCTTGCCCACCGCCCCCTCTTCGACTGGGAAAA
ATCTCTGGTGAAGCACGTCAACGCGGAGCTTTCGATCCGCTGGTCTACCT
CGTCGGACGAAGCTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCC
GCCGCGGTTGCCGCCGCTGGTCGGCCAACCTTGTCGGGAGTTGTTGGAGA
TAGCGCTGGAGGCGGTAGTCGCGGGAGCGGGAGGGTGGGGGGCGGCAGCG
GTAGGGTGGAGGAGGGTGGCGGTGGTGGCGGTGGCGGTGGCGGTGGGTGG
ACGTCTGGCCGCCGAGGACGGTTGAGGGTGCCCTTGGGACAGATCGAGGA
CGACGGGTGTTGCCGCCCCCTTGATGGGGTGGGCGTGGGGGGTGGGGGGC
GGCATAGCGGTGGTGGTGGTGGTGGTGGCGGTGGTGGCGGTGGCGTGAAG
ACTTTGCCGCGGAAGAACCCCGAGGCCGTGCCGGAGTGTCTCCTAGGCGC
GCTGCTGCCTCCGGTGCGACTTAGCTGTCTCCCCCTGGCGTTCACGCCTC
CGAAGGGTGGTGGAGGCCATCCCATGGGCGCGGGGTTGGTTGATGTCGAG
GGTTTCGCTACCTTCGGGATATCGGAGCGGGGGGAGGTGGAGATGGGGGT
GGGGGCGGGAGCGGAGGAGGAGGGCGGGGGGATGGACGCGCTGGAAGGAG
GTTGGGCGGTGAGCGTGGGATGAGATGGGATGGGAGGGGATCCAATTGGA
ATTTGATTAAATGGGGTGGGGTGGGATGGGATGGGATGGGATGGAATTGT
ATTGGGTACGGGTGTAGTGAGATGGAATTAGATGGGAAGTGGGATGGGAG
GGGACGGGTGGAATGAGGGTTGGGATGGGATGGCATGGGGCGGGGTGGGG
TGGAATGGGTGATGGAATGGGATGGGATGGGAAGGGTTGAAATGGGATGG
GATAGGGTGGGATGTGATGGGATGGGACTGAATGGTGTATTAATATGTCA
CTTGTTATCGTTTTTTTTCGTGTTTCATATTTCGTATTTCCTCTTCTGTT
TTCGTTCTTTCTTACGTATCTCCAACAGGCAACGGCGACTGTGGACTCCT
TCCTCCCCATATCCCTCCTGGTCCGCAATCCTTCTCCCTGGCCCATCGAA
GTCGACATCCAGGTCACCTCTCGCGCCGAAGGGAGCCAGACGTCTCGAGT
GTGGGGGGATGGCGATGACGACTCCGCCGAACCCGGACAGATCATGTGGT
CCGGGATGCCTAGGTGCGAGAACTGGTTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig797:30689..31970-

>mRNA_M-pyrifera_M_contig797.18701.1 ID=mRNA_M-pyrifera_M_contig797.18701.1|Name=mRNA_M-pyrifera_M_contig797.18701.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1680bp|location=Sequence derived from alignment at M-pyrifera_M_contig797:30689..31970- (Macrocystis pyrifera P11B4 male)
GACGAACCCAGGTCACCGCTTGCCCACCGCCCCCTCTTCGACTGGGAAAA
ATCTCTGGTGAAGCACGTCAACGCGGAGCTTTCGATCCGCTGGTCTACCT
CGTCGGACGAAGCTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCC
GCCGCGGTTGCCGCCGCTGGTCGGCCAACCTTGTCGGGAGACGAACCCAG
GTCACCGCTTGCCCACCGCCCCCTCTTCGACTGGGAAAAATCTCTGGTGA
AGCACGTCAACGCGGAGCTTTCGATCCGCTGGTCTACCTCGTCGGACGAA
GCTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCGGTTGC
CGCCGCTGGTCGGCCAACCTTGTCGGGAGAGGGTGGCGGTGGTGGCGGTG
GCGGTGGCGGTGGGTGGACGTCTGGCCGCCGAGGACGGTTGAGGGTGCCC
TTGGGACAGATCGAGGACGACGGGTGTTGCCGCCCCCTTGATGGGGTGGG
CGTGGGGGGTGGGGGGCGGCATAGCGGTGGTGGTGGTGGTGGTGGCGGTG
GTGGCGGTGGCGTGAAGACTTTGCCGCGGAAGAACCCCGAGGCCGTGCCG
GAGTGTCTCCTAGGCGCGCTGCTGCCTCCGGTGCGACTTAGCTGTCTCCC
CCTGGCGTTCACGCCTCCGAAGGGTGGTGGAGGCCATCCCATGGGCGCGG
GGTTGGTTGATGTCGAGGGTTTCGCTACCTTCGGGATATCGGAGCGGGGG
GAGGTGGAGATGGGGGTGGGGGCGGGAGCGGAGGAGGAGGGCGGGGGGAT
GGACGCGCTGGAAGGAGGTTGGGCGGAGGGTGGCGGTGGTGGCGGTGGCG
GTGGCGGTGGGTGGACGTCTGGCCGCCGAGGACGGTTGAGGGTGCCCTTG
GGACAGATCGAGGACGACGGGTGTTGCCGCCCCCTTGATGGGGTGGGCGT
GGGGGGTGGGGGGCGGCATAGCGGTGGTGGTGGTGGTGGTGGCGGTGGTG
GCGGTGGCGTGAAGACTTTGCCGCGGAAGAACCCCGAGGCCGTGCCGGAG
TGTCTCCTAGGCGCGCTGCTGCCTCCGGTGCGACTTAGCTGTCTCCCCCT
GGCGTTCACGCCTCCGAAGGGTGGTGGAGGCCATCCCATGGGCGCGGGGT
TGGTTGATGTCGAGGGTTTCGCTACCTTCGGGATATCGGAGCGGGGGGAG
GTGGAGATGGGGGTGGGGGCGGGAGCGGAGGAGGAGGGCGGGGGGATGGA
CGCGCTGGAAGGAGGTTGGGCGGCAACGGCGACTGTGGACTCCTTCCTCC
CCATATCCCTCCTGGTCCGCAATCCTTCTCCCTGGCCCATCGAAGTCGAC
ATCCAGGTCACCTCTCGCGCCGAAGGGAGCCAGACGTCTCGAGTGTGGGG
GGATGGCGATGACGACTCCGCCGAACCCGGACAGATCATGTGGTCCGGGA
TGCCTAGGTGCGAGAACTGGTTTTAGGCAACGGCGACTGTGGACTCCTTC
CTCCCCATATCCCTCCTGGTCCGCAATCCTTCTCCCTGGCCCATCGAAGT
CGACATCCAGGTCACCTCTCGCGCCGAAGGGAGCCAGACGTCTCGAGTGT
GGGGGGATGGCGATGACGACTCCGCCGAACCCGGACAGATCATGTGGTCC
GGGATGCCTAGGTGCGAGAACTGGTTTTAG
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