mRNA_M-pyrifera_M_contig7966.18696.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7966.18696.1
Unique NamemRNA_M-pyrifera_M_contig7966.18696.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: D7FQS4_ECTSI (Peroxisomal membrane protein 70 abcd3, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS4_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 6.270e-117
Identity = 178/205 (86.83%), Postives = 188/205 (91.71%), Query Frame = 1 
Query:    1 SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            SGSV+V E SVIEF DVPLVTP+GEVL+EALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPL GG L KPP SRLFYVPQRPYLALGTLRDQVIYPHT++EA+  G TD  LL VL+SV+LGY+L REGGWDAVRDW+DVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEG IY LAA SGITLFTVSHRKSLWKHH
Sbjct:  484 SGSVVVQEDSVIEFVDVPLVTPTGEVLVEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLRGGTLSKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAASKGVTDVDLLSVLDSVRLGYVLDREGGWDAVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGDIYRLAASSGITLFTVSHRKSLWKHH 688
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: A0A8K0K285_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K285_LADFU)

HSP 1 Score: 299 bits (765), Expect = 5.490e-99
Identity = 144/205 (70.24%), Postives = 167/205 (81.46%), Query Frame = 1 
Query:    1 SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            SG VL  + ++I+F  VPLVTP+G++L+  LSF+V +GMNVLV GPNG GKSSLFRVLG LWPL GG L KPPR +LFY+PQRPY+ LGTLRDQVIYPHT++E +  G TD+ L   LE V+LGYLL REGGWDAV DW DVLSGGEKQR+A++RLFYH PQFAILDECTSAVSVDVEG +Y       ITLFTVSHR+SLWKHH
Sbjct:  104 SGRVLFKD-NIIKFDRVPLVTPNGDILVPELSFEVRSGMNVLVCGPNGCGKSSLFRVLGELWPLFGGTLTKPPRGKLFYIPQRPYMTLGTLRDQVIYPHTRDEMARRGITDETLAEHLERVRLGYLLTREGGWDAVADWIDVLSGGEKQRIAMARLFYHAPQFAILDECTSAVSVDVEGLMYQYCREVDITLFTVSHRRSLWKHH 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: A0A2J7PN01_9NEOP (ATP-binding cassette sub-family D member 3 n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PN01_9NEOP)

HSP 1 Score: 303 bits (777), Expect = 1.190e-96
Identity = 144/205 (70.24%), Postives = 170/205 (82.93%), Query Frame = 1 
Query:    1 SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            SG ++  + ++I F  VPLVTP+G+VL++ L+F+V +G+NVLV GPNG GKSSLFRVLG LWPL GG L KPPR +LFY+PQRPY+ LGTLRDQVIYPHT+EEA   G TDD L   LE VKL YLL+REGGWDA+ DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG++Y      GITLFTVSHR+SLWKHH
Sbjct:  441 SGRIIFQD-NIIRFDKVPLVTPNGDVLVDELTFEVRSGINVLVCGPNGCGKSSLFRVLGELWPLFGGTLTKPPRGKLFYIPQRPYMTLGTLRDQVIYPHTREEALHRGQTDDDLASHLERVKLSYLLSREGGWDAIADWIDVLSGGEKQRIAMARLFYHQPQFAILDECTSAVSVDVEGSMYQYCREVGITLFTVSHRRSLWKHH 644
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: A0A8D8RGN5_9HEMI (ATP-binding cassette sub-family D member 3 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8RGN5_9HEMI)

HSP 1 Score: 289 bits (739), Expect = 1.600e-95
Identity = 136/201 (67.66%), Postives = 161/201 (80.10%), Query Frame = 1 
Query:   13 LVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            ++ + ++I+F  VPL+TP+G+VL+  LSF+V +GMNVLV GPNG GKSSLFR+LG LWPL GG + KPPR +LFYVPQRPY+ LGTLRDQVIYPHT+EE    G TD  L   L  V+L Y+L RE GWD V DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG++Y      GITLFTVSHRKSLW HH
Sbjct:   73 IIFQDNIIKFDKVPLITPNGDVLVRELSFEVRSGMNVLVCGPNGCGKSSLFRILGELWPLFGGCVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEEMLAKGVTDTDLTDYLNKVQLDYVLNREKGWDTVADWIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHH 273
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: A0A2D4CER2_PYTIN (Long chain acyl-CoA transporter ABC transporter n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CER2_PYTIN)

HSP 1 Score: 299 bits (766), Expect = 5.690e-95
Identity = 143/205 (69.76%), Postives = 168/205 (81.95%), Query Frame = 1 
Query:    1 SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            +G  +V    VI+F  VPLVTP+G+VL+ +L  +VE+GMNV+VAGPNG GKSSLFR+LG LWPL GG L KP R+ LFY+PQRPYL LG+LRDQ+IYPHT  +  E G TDD LL +LE V+LGYL+AREGGWD V DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEGA+YS      ITLFTVSHRKSLWK+H
Sbjct:  444 NGGKMVFADHVIQFEGVPLVTPNGDVLVRSLDVRVESGMNVVVAGPNGCGKSSLFRILGELWPLFGGTLTKPARNGLFYIPQRPYLTLGSLRDQIIYPHTVADMRERGRTDDELLQLLERVQLGYLVAREGGWDVVHDWADVLSGGEKQRVAMARLFYHKPQFAILDECTSAVSVDVEGAMYSYCREQDITLFTVSHRKSLWKYH 648
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: A0A7R9F7M2_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9F7M2_9NEOP)

HSP 1 Score: 296 bits (759), Expect = 7.200e-95
Identity = 141/206 (68.45%), Postives = 168/206 (81.55%), Query Frame = 1 
Query:    1 SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLL-AREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            S   ++ + ++I F  VPLVTP+G++LIE L+F+V++G+NVLV GPNG GKSSLFR+LG LWPL GG L KPPR +LFY+PQRPY+ LGTLRDQVIYPHT+EE    G TD  L   L+ VKL YLL ARE GWDA+ DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG++Y     SGITLFTVSHR+SLWKHH
Sbjct:  355 SSGRIIFQDNIIRFDRVPLVTPNGDILIEELTFEVQSGINVLVCGPNGCGKSSLFRILGELWPLFGGTLTKPPRGKLFYIPQRPYMTLGTLRDQVIYPHTREEMIRRGRTDSELTQHLDRVKLSYLLSARESGWDAIEDWIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGSMYQYCRESGITLFTVSHRRSLWKHH 560
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: A0A822GLU9_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822GLU9_9NEOB)

HSP 1 Score: 288 bits (738), Expect = 1.070e-94
Identity = 141/205 (68.78%), Postives = 167/205 (81.46%), Query Frame = 1 
Query:    1 SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            SG+V +N  ++I+F  VPL TP+G++LI  L+F+V +G NVLV GPNG GKSSLFRVLG LWPL GG L KP R +LFYVPQRPY+ LGTLRDQVIYP TQE+    G +D  L   L++V+LG +L REGGWD+V+DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG IYS   + GITLFTVSHRKSLWKHH
Sbjct:  118 SGTV-INTDNIIKFEHVPLATPNGDLLIRDLTFEVRSGTNVLVCGPNGCGKSSLFRVLGELWPLFGGSLTKPDRGKLFYVPQRPYMTLGTLRDQVIYPDTQEDQKRRGISDKVLKEYLDNVQLGQILDREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHH 321
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: UPI001F5F8E48 (ATP-binding cassette sub-family D member 3 n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F5F8E48)

HSP 1 Score: 298 bits (763), Expect = 1.480e-94
Identity = 143/205 (69.76%), Postives = 167/205 (81.46%), Query Frame = 1 
Query:    1 SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            SG ++  + ++I F  VPLVTP+G++L+E L+F+V +GMNVLV GPNG GKSSLFRVLG LWPL GG L KPPR +LFY+PQRPY+ LGTLRDQVIYPHTQEE    G TD  L   LE V+L YLL REGGWDA+ DW DVLSGGEKQR+A++RLFYH PQFAILDECTSAVSVDVEG++Y     +GITLFTVSHRKSLW+HH
Sbjct:  442 SGRIIFQD-NIIRFDRVPLVTPNGDMLVEELTFEVRSGMNVLVCGPNGCGKSSLFRVLGELWPLFGGTLTKPPRGKLFYIPQRPYMTLGTLRDQVIYPHTQEEMRRRGKTDADLERHLERVQLSYLLTREGGWDAIADWIDVLSGGEKQRIAMARLFYHAPQFAILDECTSAVSVDVEGSMYRYCRETGITLFTVSHRKSLWQHH 645
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: A0A067RKH0_ZOONE (ATP-binding cassette sub-family D member 3 n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067RKH0_ZOONE)

HSP 1 Score: 298 bits (763), Expect = 1.630e-94
Identity = 142/205 (69.27%), Postives = 165/205 (80.49%), Query Frame = 1 
Query:    1 SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            SG ++  + +VI F  VPLVTP+G++L+  L F+V +G+NVLV GPNG GKSSLFRVLG LWPL GG L KPPR +LFY+PQRPY+ LGTLRDQVIYPHT +E    G TDD L   LE VKL YLL REGGWDA+ DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG++Y      GITLFTVSHR+SLWKHH
Sbjct:  446 SGRIIFQD-NVIRFDKVPLVTPNGDILVNELDFEVRSGINVLVCGPNGCGKSSLFRVLGELWPLFGGTLTKPPRGKLFYIPQRPYMTLGTLRDQVIYPHTHDEMLRRGKTDDDLADHLERVKLSYLLCREGGWDAIADWIDVLSGGEKQRIAMARLFYHQPQFAILDECTSAVSVDVEGSMYQYCREVGITLFTVSHRRSLWKHH 649
[Close]
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Match: A0A6L2PMP8_COPFO (Uncharacterized protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PMP8_COPFO)

HSP 1 Score: 297 bits (761), Expect = 1.750e-94
Identity = 141/205 (68.78%), Postives = 165/205 (80.49%), Query Frame = 1 
Query:    1 SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHTQEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKSLWKHH 615
            SG ++  + ++I F  VPLVTP+G++L+  L+F+V +G+NVLV GPNG GKSSLFRVLG LWPL GG L KPPR +LFY+PQRPY+ LGTLRDQVIYPHT +E    G TD  L   LE VKL YLL+REGGWDAV DW DVLSGGEKQR+A++RLFYH PQFAILDECTSAVSVDVEG++Y      GITLFTVSHR+SLWKHH
Sbjct:  422 SGRIIFQD-NIIRFDKVPLVTPNGDILVNELTFEVRSGVNVLVCGPNGCGKSSLFRVLGELWPLFGGTLTKPPRGKLFYIPQRPYMTLGTLRDQVIYPHTHDEVLHRGKTDSDLASYLERVKLSYLLSREGGWDAVADWLDVLSGGEKQRIAMARLFYHHPQFAILDECTSAVSVDVEGSMYRYCREVGITLFTVSHRRSLWKHH 625
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7966.18696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQS4_ECTSI6.270e-11786.83Peroxisomal membrane protein 70 abcd3, putative n=... [more]
A0A8K0K285_LADFU5.490e-9970.24Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A2J7PN01_9NEOP1.190e-9670.24ATP-binding cassette sub-family D member 3 n=2 Tax... [more]
A0A8D8RGN5_9HEMI1.600e-9567.66ATP-binding cassette sub-family D member 3 n=1 Tax... [more]
A0A2D4CER2_PYTIN5.690e-9569.76Long chain acyl-CoA transporter ABC transporter n=... [more]
A0A7R9F7M2_9NEOP7.200e-9568.45Hypothetical protein n=1 Tax=Timema bartmani TaxID... [more]
A0A822GLU9_9NEOB1.070e-9468.78(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
UPI001F5F8E481.480e-9469.76ATP-binding cassette sub-family D member 3 n=2 Tax... [more]
A0A067RKH0_ZOONE1.630e-9469.27ATP-binding cassette sub-family D member 3 n=1 Tax... [more]
A0A6L2PMP8_COPFO1.750e-9468.78Uncharacterized protein n=1 Tax=Coptotermes formos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7966contigM-pyrifera_M_contig7966:6567..8630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.1
Seed ortholog evalue5.6e-96
Seed eggNOG ortholog2880.D7FQS4
Preferred nameABCD3
KEGG koko:K05677
KEGG TC3.A.1.203.1
KEGG Pathwayko02010,ko04146,map02010,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000038,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0005782,GO:0005829,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019395,GO:0019752,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0030587,GO:0031090,GO:0031224,GO:0031231,GO:0031288,GO:0031300,GO:0031301,GO:0031903,GO:0031907,GO:0031974,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033036,GO:0034440,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0042623,GO:0042626,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043621,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0046395,GO:0046942,GO:0046983,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0055114,GO:0070013,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072330,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902495,GO:1904949,GO:1990351
EggNOG free text desc.ATP-binding cassette sub-family D
EggNOG OGsCOG4178@1,KOG0060@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons4
Model size615
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7966.18696.1prot_M-pyrifera_M_contig7966.18696.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7966 6567..8630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.252883-CDS-M-pyrifera_M_contig7966:6566..66651622816700.252883-CDS-M-pyrifera_M_contig7966:6566..6665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7966 6567..6665 -
1692278127.4693487-CDS-M-pyrifera_M_contig7966:6566..66651692278127.4693487-CDS-M-pyrifera_M_contig7966:6566..6665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7966 6567..6665 -
1622816700.2640707-CDS-M-pyrifera_M_contig7966:6886..70931622816700.2640707-CDS-M-pyrifera_M_contig7966:6886..7093Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7966 6887..7093 -
1692278127.4816053-CDS-M-pyrifera_M_contig7966:6886..70931692278127.4816053-CDS-M-pyrifera_M_contig7966:6886..7093Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7966 6887..7093 -
1622816700.2769647-CDS-M-pyrifera_M_contig7966:7781..79881622816700.2769647-CDS-M-pyrifera_M_contig7966:7781..7988Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7966 7782..7988 -
1692278127.4914715-CDS-M-pyrifera_M_contig7966:7781..79881692278127.4914715-CDS-M-pyrifera_M_contig7966:7781..7988Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7966 7782..7988 -
1622816700.2902415-CDS-M-pyrifera_M_contig7966:8528..86301622816700.2902415-CDS-M-pyrifera_M_contig7966:8528..8630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7966 8529..8630 -
1692278127.5031486-CDS-M-pyrifera_M_contig7966:8528..86301692278127.5031486-CDS-M-pyrifera_M_contig7966:8528..8630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7966 8529..8630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7966.18696.1

>prot_M-pyrifera_M_contig7966.18696.1 ID=prot_M-pyrifera_M_contig7966.18696.1|Name=mRNA_M-pyrifera_M_contig7966.18696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
SGSVLVNEGSVIEFTDVPLVTPSGEVLIEALSFKVEAGMNVLVAGPNGSG
KSSLFRVLGGLWPLSGGVLVKPPRSRLFYVPQRPYLALGTLRDQVIYPHT
QEEASENGATDDGLLVVLESVKLGYLLAREGGWDAVRDWTDVLSGGEKQR
LALSRLFYHRPQFAILDECTSAVSVDVEGAIYSLAARSGITLFTVSHRKS
LWKHH
back to top

mRNA from alignment at M-pyrifera_M_contig7966:6567..8630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7966.18696.1 ID=mRNA_M-pyrifera_M_contig7966.18696.1|Name=mRNA_M-pyrifera_M_contig7966.18696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2064bp|location=Sequence derived from alignment at M-pyrifera_M_contig7966:6567..8630- (Macrocystis pyrifera P11B4 male)
TCCGGGTCTGTGTTGGTGAACGAGGGAAGCGTGATCGAGTTCACCGATGT
GCCGCTTGTAACGCCGAGCGGCGAGGTCTTGATCGAGGCCCTCTCTTTCA
AGGTACGGAGGGTGTCAACAAGAGTTGAAGAGGGAGCAATGCTCAGTCGC
GCCTTGCTTTTGTCTGGACGCGCGGAGGGCACAGGACGGCGACAGTGCGG
GGCGGGAGCCTCGTGGTAATATTTTCTCGATATTTTGCGGCAAATTGCGC
GCGACGATGCAAACATATATATTGTGACGTCCCACCAATCTGCGCAACGC
GGTATTTTTCATGTTTCGCTTTGTTTGTCTTATTTATACCAGGTGTTTGT
TTGCTTTTCTTCTCGTTTTTCAACGGCACCTTGGTATTGCGGATGTCAAT
CACGATAAACTGCTGTTTGTAATGGGGAAAATACAGCTGACGCTGGACGA
ATCGACCGCTCGCGAACCGTCAACTCTGTGTCATGCCCGGGTTGAGACGC
TCGCACCAACGAAACCCTCTCGGGCCATTTGCAAGCGTTCAGCGCACCAC
CTTACCAAGCCCCCCCCCCCCCCTCGCCGTGCCACCGCCGCCCGTGCTCG
GATTGTTTCTGTGGTTCCCACCACGCGATTGGATTGAGCAAGGTGGAAGC
GGGCATGAATGTTCTGGTGGCAGGGCCTAACGGGTCGGGAAAGTCTAGCC
TGTTCAGGGTGCTGGGTGGGCTGTGGCCTTTATCGGGCGGCGTTTTGGTG
AAGCCGCCGAGGTCTAGGCTGTTCTACGTCCCCCAGAGGCCGTACCTAGC
TCTCGGGACTCTGCGGGACCAAGTAATCTATCCACACACGCAGGAAGAGG
TGAAGAGGAAAAAAAATAACACAAGAGGCCTACCATGGGTAAGCGTAGGG
TTTACGCCCCTCTTCCTTACCAGGTGTTCCCTTTCATGCTGCCAAAACCA
TCCCACACGAAAATCCAAGCAGGCTTTCCCCAAAAAACGGGAGTGCGGTT
CTTAAGGGGTTTAAACAACTTTTGGCAACGGTTTTCGCCCATGTTGACCA
GTGCGTTGCTTTTGAGGATGGCCTGATTGCACTGTTTGCTGCCTGTGCGA
TGGTGGCGAAGCTTCAGATGGCGACGCGAGGGGGGGGGTGTACCCTTTTC
CGGATTTATGTCCGCGTGAATGCTGTCGGATAAGGAATCCGTCCCCTTTC
CGCCTTTCGGTTGGCTCTAGTCGCCCGTTGTACCGTGCGCCTTCTACTGT
GCTCGAGTCGCGCGTTCCGGCGCCTCATATGACTCGAGTCGCCCGTTCTG
CCGTCTCGTTGCCTCGAGTAACCCCATTCCGCCGTATCGCTGACTCAATT
TCCCCGACTCGGCACGATGGCCGCCACAGGCAGTGTACAAGCCATGTCCA
TGTGTAACCTTCAACAGCGTCCGATGTGGGGCTGCCCCTCCCCCCCTCTC
TCCTCCCAGCACAGTTCCCAGCACCGATCCCAGTAACGTTCCCAATATTG
ATGACTGCCACATTTTGGGTCCGACTCGTATATCCAGGCCTCGGAAAACG
GAGCGACCGATGATGGCCTACTGGTGGTGCTGGAGTCGGTCAAGCTGGGG
TACCTGTTGGCCCGGGAGGGTGGGTGGGATGCCGTTCGAGATTGGACCGA
CGTGTTGTCCGGGGGCGAGAAGCAAAGGCTGGCGCTTAGCAGGCTCTTCT
ACCACCGGCCGCAGTTCGCGATTTTGGACGAGTGTACGAGCGCCGTGAGT
TGTGCTGGGATTCTATTGGTATTTTTGTTGACATCATGTCGTTCAGCTCC
TCGCGTTTCCCGTCAGACACGCCCTTCCCTACTGGTTGCTTCGTGCGGCC
GTTGCTTTACTGTAATCAAATCATTTCGTTTCGACATTTTTCTCGTCACT
GCAATCAAGTCCCGAAGGGGTTACTGTGACACCCTGCTGCCGTACGCTTC
GCGCGCTATTCATAGGTGAGTGTTGACGTCGAGGGCGCAATCTACAGCCT
GGCGGCGCGCAGCGGGATCACTCTCTTCACGGTATCCCACCGCAAGAGCT
TGTGGAAGCATCAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7966:6567..8630-

>mRNA_M-pyrifera_M_contig7966.18696.1 ID=mRNA_M-pyrifera_M_contig7966.18696.1|Name=mRNA_M-pyrifera_M_contig7966.18696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig7966:6567..8630- (Macrocystis pyrifera P11B4 male)
TCCGGGTCTGTGTTGGTGAACGAGGGAAGCGTGATCGAGTTCACCGATGT
GCCGCTTGTAACGCCGAGCGGCGAGGTCTTGATCGAGGCCCTCTCTTTCA
AGTCCGGGTCTGTGTTGGTGAACGAGGGAAGCGTGATCGAGTTCACCGAT
GTGCCGCTTGTAACGCCGAGCGGCGAGGTCTTGATCGAGGCCCTCTCTTT
CAAGGTGGAAGCGGGCATGAATGTTCTGGTGGCAGGGCCTAACGGGTCGG
GAAAGTCTAGCCTGTTCAGGGTGCTGGGTGGGCTGTGGCCTTTATCGGGC
GGCGTTTTGGTGAAGCCGCCGAGGTCTAGGCTGTTCTACGTCCCCCAGAG
GCCGTACCTAGCTCTCGGGACTCTGCGGGACCAAGTAATCTATCCACACA
CGCAGGAAGAGGTGGAAGCGGGCATGAATGTTCTGGTGGCAGGGCCTAAC
GGGTCGGGAAAGTCTAGCCTGTTCAGGGTGCTGGGTGGGCTGTGGCCTTT
ATCGGGCGGCGTTTTGGTGAAGCCGCCGAGGTCTAGGCTGTTCTACGTCC
CCCAGAGGCCGTACCTAGCTCTCGGGACTCTGCGGGACCAAGTAATCTAT
CCACACACGCAGGAAGAGGCCTCGGAAAACGGAGCGACCGATGATGGCCT
ACTGGTGGTGCTGGAGTCGGTCAAGCTGGGGTACCTGTTGGCCCGGGAGG
GTGGGTGGGATGCCGTTCGAGATTGGACCGACGTGTTGTCCGGGGGCGAG
AAGCAAAGGCTGGCGCTTAGCAGGCTCTTCTACCACCGGCCGCAGTTCGC
GATTTTGGACGAGTGTACGAGCGCCGCCTCGGAAAACGGAGCGACCGATG
ATGGCCTACTGGTGGTGCTGGAGTCGGTCAAGCTGGGGTACCTGTTGGCC
CGGGAGGGTGGGTGGGATGCCGTTCGAGATTGGACCGACGTGTTGTCCGG
GGGCGAGAAGCAAAGGCTGGCGCTTAGCAGGCTCTTCTACCACCGGCCGC
AGTTCGCGATTTTGGACGAGTGTACGAGCGCCGTGAGTGTTGACGTCGAG
GGCGCAATCTACAGCCTGGCGGCGCGCAGCGGGATCACTCTCTTCACGGT
ATCCCACCGCAAGAGCTTGTGGAAGCATCACGTGAGTGTTGACGTCGAGG
GCGCAATCTACAGCCTGGCGGCGCGCAGCGGGATCACTCTCTTCACGGTA
TCCCACCGCAAGAGCTTGTGGAAGCATCAC
back to top