mRNA_M-pyrifera_M_contig79655.18695.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A5A8DDD1_CAFRO (DNA-directed RNA polymerase subunit beta n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDD1_CAFRO) HSP 1 Score: 270 bits (690), Expect = 2.890e-79 Identity = 132/269 (49.07%), Postives = 180/269 (66.91%), Query Frame = 1 Query: 4 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNRYEVGFGEVALSYPTHDEAD-GEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQE-WFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804 +I AYF EKGLVRQQLDSFN F++N + D+V T ++++ P+RT+ P + NRYEV F +V + P + EAD ++ P EAR R LTY S +F V W ++N T E E + W GNIP+MV+ +C LR S++ TELGECKFD+GGYF+VNGSEKV+IA ERQA+NRVYCF ++P K SW E+RSQTE+ ++P+ + M R+ +R DV G+ IR RL + Q IPVV +F A+G+ + R+ L +IVYD D Sbjct: 48 VIKAYFDEKGLVRQQLDSFNRFISNSVVDMVTNTPKMSLRPKRTYLPSVTVFPNRYEVWFADVQIGRPVNMEADESTSREIFPAEARHRNLTYQSSMFTHVVWRGYNNATDEPVTPAPEQERCWIGNIPIMVQSHFCRLRGLSDRAKTELGECKFDQGGYFVVNGSEKVIIAQERQAYNRVYCFEMRQPSKLSWRAEIRSQTENSSRPLSALNVVMYRKSERGDVQTGNNIRVRLQSIRQDIPVVTVFMAMGYVNARNTLSHIVYDPED 316
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A482SAA6_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAA6_9ARCH) HSP 1 Score: 243 bits (619), Expect = 8.280e-76 Identity = 123/275 (44.73%), Postives = 178/275 (64.73%), Query Frame = 1 Query: 4 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAF----DNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804 +ID YF EKGLVRQQ+DSF+EF+TN I D++D + I P+R + ++ + + + FG++ ++ P EADGE +L PQEARLR LTY SQ+FV V F D + R S+ + GNIP+M++ +YC L ++ +T++GEC FD+GGYF++NGSEKV+IA ER + N VY F ++PHK+ W TE+RS + +P +LQM + G + + +GHQI LP + + +P+VV+FRALGF SD+ VL +IVYD SD Sbjct: 35 VIDRYFEEKGLVRQQIDSFDEFITNTIQDLIDDAGEIFIKPERQYLSMNDIEQHGHRIKFGQIYVTQPVIYEADGEQRELYPQEARLRNLTYQSQIFVDVKVEEFKLDEDGKVDWRNDLPINSKRFDMIKLGNIPIMLRSRYCILNSRMDRDLTKVGECVFDQGGYFVINGSEKVMIAQERLSNNHVYVFKKQQPHKYEWVTEIRSHVDTGARPTSTCQLQMSKMGGKLAI-DGHQISCSLPYIREPVPIVVVFRALGFISDKDVLQHIVYDFSD 308
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A3R7CZ86_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7CZ86_9STRA) HSP 1 Score: 241 bits (615), Expect = 3.520e-75 Identity = 127/278 (45.68%), Postives = 177/278 (63.67%), Query Frame = 1 Query: 1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNR-----YEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDN-----ETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804 A+I AYF EKGLVRQQLDSF+EF+ N + +++D + + I+P+ + PG + SNR Y++ FG++ LS T E+DG + P EARLR LTY++ L+V VT F E E EE ++E+ G+IP+M++ +YC L D S+K +TEL EC +D+GGYF++NGSEKVLIA ER + N VYCF K+SW E RS E +P +QM + GHQIRA +P + Q IPVV++FRALGF +DR +L++I YD +D Sbjct: 16 AVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQK--SNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQAGTVPIEEQEPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTD 291
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A7S1C2I4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2I4_9STRA) HSP 1 Score: 254 bits (650), Expect = 5.440e-74 Identity = 128/268 (47.76%), Postives = 176/268 (65.67%), Query Frame = 1 Query: 4 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNR--YEVGFGEVALSYPTHDEADGE-GVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGD-RSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYD 795 +I A+F +KGLV+QQLDSF+ F+ + ++++ T + I P R +APG Y + FG LS PTH+E E L P ARLR LTY S LF+ +T FD +TGE GE +E G++P MV ++C L ++K+ TELGEC FD+GGYF++NGSEKV+IALERQ++NRVYCF K+P K SW E+RS+ + N+PI ++ M G R HEG+QIRAR+P + + IP+V+LFRALG +D+ VLD +VYD Sbjct: 45 IIRAFFKDKGLVKQQLDSFDLFVETTLQEIIEDTPHIEIRPNRQYAPGDAAVDPNVGYRITFGGAYLSKPTHNEEGSETSAPLFPSAARLRNLTYESNLFLEMTCQPFDTDTGEAAGEADEQTLLCGSVPTMVMSRFCRLYGQTDKIKTELGECVFDQGGYFVINGSEKVIIALERQSYNRVYCFEKKQPSKFSWVGEVRSRLDRSNRPISSLDILMYTSGGGRRGTHEGNQIRARVPYIREDIPIVILFRALGCVADKKVLDRVVYD 312
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE) HSP 1 Score: 239 bits (611), Expect = 9.120e-72 Identity = 117/277 (42.24%), Postives = 178/277 (64.26%), Query Frame = 1 Query: 4 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENES----------QEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804 +I AYF EKGLVRQQLDSF+EFL + + ++V + I+P+ + PG + +++ FG+V L+ PT E DG + P EARLR LTY S L+ ++ ++ + G+R EE E +E+ G +P+M++ +C L + ++K +TELGEC +D+GGYF++NGSEKVLIA ER + N VYCF ++P K +WT+E+RS ++ +P LQM +G + G IRA+LP + +PVV++FRALG+ +D+ +L++IVYD SD Sbjct: 112 VISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSD 388
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A2G9G3E3_9LAMI (DNA-directed RNA polymerase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9G3E3_9LAMI) HSP 1 Score: 228 bits (582), Expect = 2.760e-70 Identity = 120/274 (43.80%), Postives = 174/274 (63.50%), Query Frame = 1 Query: 1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804 A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+ PG ++ Y++ FG++ LS P E+DGE L P+ ARLR LTY++ L+V VT + G E E+Q++ G +P+M++ YC L SEK +TELGEC +D GGYFI+NGSEKVLIA E+ + N VY F ++P+K+++ E+RS E N+P ++ML R G IRA LP + IP++++FRALGF +D+ +L++I Y+ SD Sbjct: 34 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAEIEIRPESQHNPGHQSDFAETIYKITFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI--KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDHGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFSD 305
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A3P6C3H5_BRAOL (DNA-directed RNA polymerase (Fragment) n=2 Tax=Brassica TaxID=3705 RepID=A0A3P6C3H5_BRAOL) HSP 1 Score: 229 bits (583), Expect = 2.950e-70 Identity = 118/274 (43.07%), Postives = 178/274 (64.96%), Query Frame = 1 Query: 1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804 A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+ PG ++ Y++ FG++ LS P E+DGE L P+ ARLR LTY++ L+V V+ + G E E+Q++ G +P+M++ YC L SEK +TELGEC +D+GGYFI+NGSEKVLIA E+ + N+VY F ++P+K+++ E+RS E+ N+P ++ML R + G IR LP + + IP++++FRALGF +D+ +L++I YD +D Sbjct: 30 AVISAYFEEKGLVRQQLDSFDEFIQNSMQEIVDESADIEIRPESQHNPGHQSDFTETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVI--KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNQVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARANAKGGSSGQYIRCTLPYIKKEIPIIIVFRALGFVADKDILEHICYDFAD 301
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: UPI00200978D5 (DNA-directed RNA polymerase II subunit RPB2-like n=2 Tax=Mesangiospermae TaxID=1437183 RepID=UPI00200978D5) HSP 1 Score: 227 bits (579), Expect = 1.710e-69 Identity = 119/274 (43.43%), Postives = 173/274 (63.14%), Query Frame = 1 Query: 1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804 A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+ PG + Y++ FG++ LS P E+DGE L P+ ARLR LTY++ L+V VT + G E E+Q++ G +P+M++ YC L SEK +TELGEC +D+GGYFI+NGSEKVLIA E+ + N VY F ++P+K+++ E+RS E N+P ++ML R G IRA LP + IP++++FRALGF +D+ +L++I Y+ D Sbjct: 42 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKVI--KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQD 313
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A024TRP0_9STRA (DNA-directed RNA polymerase subunit beta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TRP0_9STRA) HSP 1 Score: 241 bits (615), Expect = 3.010e-69 Identity = 127/278 (45.68%), Postives = 177/278 (63.67%), Query Frame = 1 Query: 1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNR-----YEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDN-----ETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804 A+I AYF EKGLVRQQLDSF+EF+ N + +++D + + I+P+ + PG + SNR Y++ FG++ LS T E+DG + P EARLR LTY++ L+V VT F E E EE ++E+ G+IP+M++ +YC L D S+K +TEL EC +D+GGYF++NGSEKVLIA ER + N VYCF K+SW E RS E +P +QM + GHQIRA +P + Q IPVV++FRALGF +DR +L++I YD +D Sbjct: 16 AVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQK--SNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQAGTVPIEEQEPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTD 291
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A453LQ85_AEGTS (DNA-directed RNA polymerase n=7 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LQ85_AEGTS) HSP 1 Score: 230 bits (587), Expect = 4.770e-69 Identity = 120/274 (43.80%), Postives = 174/274 (63.50%), Query Frame = 1 Query: 1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804 A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+ PG E +++ FG++ LS P EADGE L P+ ARLR LTY++ L+V V++ + G E E+ E+ G +P+M++ YC L SEK +TELGEC +D+GGYF++NGSEKVLIA E+ + N VY F ++P+K ++ E+RS E+ N+P ++ML R G IRA LP + IP++++FRALGF +D+ +L++I YD SD Sbjct: 100 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVV--KKGHDCEEVTETAEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVGEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSD 371 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig79655.18695.1 >prot_M-pyrifera_M_contig79655.18695.1 ID=prot_M-pyrifera_M_contig79655.18695.1|Name=mRNA_M-pyrifera_M_contig79655.18695.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=268bp ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTback to top mRNA from alignment at M-pyrifera_M_contig79655:1..804- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig79655.18695.1 ID=mRNA_M-pyrifera_M_contig79655.18695.1|Name=mRNA_M-pyrifera_M_contig79655.18695.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig79655:1..804- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig79655:1..804- >mRNA_M-pyrifera_M_contig79655.18695.1 ID=mRNA_M-pyrifera_M_contig79655.18695.1|Name=mRNA_M-pyrifera_M_contig79655.18695.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1608bp|location=Sequence derived from alignment at M-pyrifera_M_contig79655:1..804- (Macrocystis pyrifera P11B4 male)back to top |