mRNA_M-pyrifera_M_contig79651.18693.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79651.18693.1
Unique NamemRNA_M-pyrifera_M_contig79651.18693.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79651.18693.1 vs. uniprot
Match: A0A7S4MKZ1_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MKZ1_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 3.270e-23
Identity = 43/81 (53.09%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    7 ELRLRRVKELLQSEKAHVAALDIVVDEYLYPLIRADILPHSTLKEVFCNLELIRNWNQTFLSALEAHLECGDTFGDLFMEM 249
            E R+R V+ELL++E+ HV++LD+ +  YL PL   +ILP +T++ +F NLE+IRNWNQTFL+ LEA +ECG+T G +F++M
Sbjct:   39 EKRMRVVRELLETERTHVSSLDVAISHYLAPLTATNILPPTTIRAIFSNLEVIRNWNQTFLAFLEAEIECGETLGSVFLQM 119
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BLAST of mRNA_M-pyrifera_M_contig79651.18693.1 vs. uniprot
Match: UPI0018CCAB3F (rho guanine nucleotide exchange factor 7 isoform X2 n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CCAB3F)

HSP 1 Score: 53.5 bits (127), Expect = 2.400e-6
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   25 VKELLQSEKAHVAALDIVVDEYLYPLIRADILPHSTLKEVFCNLELIRNWNQTFLSALEAHLECGDTFGDLFM 243
            +K+LL SE+AHVA ++ +++ +L PL+  +IL      ++ CN   + N +   LS +E   EC D  G LF+
Sbjct:   83 LKDLLDSERAHVAEIEGLLENFLQPLLETEILTQDEYVQLMCNFVDVVNTHNELLSQME---ECNDRIGKLFL 152
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BLAST of mRNA_M-pyrifera_M_contig79651.18693.1 vs. uniprot
Match: UPI0018CE2327 (uncharacterized protein LOC119687177 isoform X1 n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE2327)

HSP 1 Score: 53.5 bits (127), Expect = 2.430e-6
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   25 VKELLQSEKAHVAALDIVVDEYLYPLIRADILPHSTLKEVFCNLELIRNWNQTFLSALEAHLECGDTFGDLFM 243
            +K+LL SE+AHVA ++ +++ +L PL+  +IL      ++ CN   + N +   LS +E   EC D  G LF+
Sbjct:   83 LKDLLDSERAHVAEIEGLLENFLQPLLETEILTQDEYVQLMCNFVDVVNTHNELLSQME---ECNDRIGKLFL 152
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BLAST of mRNA_M-pyrifera_M_contig79651.18693.1 vs. uniprot
Match: A0A151ZD79_9MYCE (Pleckstrin (PH) domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZD79_9MYCE)

HSP 1 Score: 51.6 bits (122), Expect = 1.150e-5
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   13 RLRRVKELLQSEKAHVAALDIVVDEYLYPLIRAD--ILPHSTLKEVFCNLELIRNWNQTFLSALE 201
            R R +KEL+Q+E+  V++L+  ++EYL PL   +  +L    L E+FCN+E+I  +N+ FL  L+
Sbjct:  568 RARIIKELIQTEQTLVSSLNTCIEEYLIPLRVQEKPLLTMDQLNEIFCNIEVIHEFNKGFLKLLD 632
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BLAST of mRNA_M-pyrifera_M_contig79651.18693.1 vs. uniprot
Match: A0A084VP67_ANOSI (Uncharacterized protein n=1 Tax=Anopheles sinensis TaxID=74873 RepID=A0A084VP67_ANOSI)

HSP 1 Score: 49.7 bits (117), Expect = 5.570e-5
Identity = 26/72 (36.11%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   28 KELLQSEKAHVAALDIVVDEYLYPLIRADILPHSTLKEVFCNLELIRNWNQTFLSALEAHLECGDTFGDLFM 243
            ++LL+SEKAHVA L  +V+ ++ PL  + IL  +   ++ CN   +   ++ FL  LE   EC D  G +F+
Sbjct:   85 RDLLESEKAHVAELRGLVENFMEPLETSQILTGNEYAQLLCNFLEVVEMHEEFLQTLE---ECNDRVGKVFL 153
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BLAST of mRNA_M-pyrifera_M_contig79651.18693.1 vs. uniprot
Match: A0A182JEI5_9DIPT (Uncharacterized protein n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182JEI5_9DIPT)

HSP 1 Score: 49.3 bits (116), Expect = 7.650e-5
Identity = 26/72 (36.11%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   28 KELLQSEKAHVAALDIVVDEYLYPLIRADILPHSTLKEVFCNLELIRNWNQTFLSALEAHLECGDTFGDLFM 243
            ++LL+SEKAHVA L  +V+ +L PL  + IL  +   ++ CN   +   ++ FL  LE   +C D  G +F+
Sbjct:   85 RDLLESEKAHVAELRGLVENFLEPLEASQILSANEYTQLMCNFLEVVEMHEEFLQTLE---DCNDRVGKVFL 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79651.18693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S4MKZ1_9EUKA3.270e-2353.09Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
UPI0018CCAB3F2.400e-635.62rho guanine nucleotide exchange factor 7 isoform X... [more]
UPI0018CE23272.430e-635.62uncharacterized protein LOC119687177 isoform X1 n=... [more]
A0A151ZD79_9MYCE1.150e-540.00Pleckstrin (PH) domain-containing protein n=1 Tax=... [more]
A0A084VP67_ANOSI5.570e-536.11Uncharacterized protein n=1 Tax=Anopheles sinensis... [more]
A0A182JEI5_9DIPT7.650e-536.11Uncharacterized protein n=1 Tax=Anopheles atroparv... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79651contigM-pyrifera_M_contig79651:573..821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.1459446-CDS-M-pyrifera_M_contig79651:572..8211622816700.1459446-CDS-M-pyrifera_M_contig79651:572..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79651 573..821 +
1692278127.413304-CDS-M-pyrifera_M_contig79651:572..8211692278127.413304-CDS-M-pyrifera_M_contig79651:572..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79651 573..821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79651.18693.1prot_M-pyrifera_M_contig79651.18693.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79651 573..821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79651.18693.1

>prot_M-pyrifera_M_contig79651.18693.1 ID=prot_M-pyrifera_M_contig79651.18693.1|Name=mRNA_M-pyrifera_M_contig79651.18693.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
MRELRLRRVKELLQSEKAHVAALDIVVDEYLYPLIRADILPHSTLKEVFC
NLELIRNWNQTFLSALEAHLECGDTFGDLFMEM
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mRNA from alignment at M-pyrifera_M_contig79651:573..821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79651.18693.1 ID=mRNA_M-pyrifera_M_contig79651.18693.1|Name=mRNA_M-pyrifera_M_contig79651.18693.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig79651:573..821+ (Macrocystis pyrifera P11B4 male)
ATGCGCGAGCTGCGGCTGAGGCGCGTCAAGGAGCTCCTCCAGTCGGAGAA
GGCGCACGTGGCCGCGCTCGACATCGTGGTGGACGAGTACCTCTACCCGC
TCATCAGGGCCGACATTCTGCCGCACTCTACCCTCAAGGAGGTGTTCTGC
AACCTCGAGCTGATCCGCAACTGGAACCAGACCTTCCTCTCGGCCCTCGA
GGCCCACCTCGAGTGCGGCGACACCTTCGGCGACCTCTTCATGGAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79651:573..821+

>mRNA_M-pyrifera_M_contig79651.18693.1 ID=mRNA_M-pyrifera_M_contig79651.18693.1|Name=mRNA_M-pyrifera_M_contig79651.18693.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig79651:573..821+ (Macrocystis pyrifera P11B4 male)
ATGCGCGAGCTGCGGCTGAGGCGCGTCAAGGAGCTCCTCCAGTCGGAGAA
GGCGCACGTGGCCGCGCTCGACATCGTGGTGGACGAGTACCTCTACCCGC
TCATCAGGGCCGACATTCTGCCGCACTCTACCCTCAAGGAGGTGTTCTGC
AACCTCGAGCTGATCCGCAACTGGAACCAGACCTTCCTCTCGGCCCTCGA
GGCCCACCTCGAGTGCGGCGACACCTTCGGCGACCTCTTCATGGAGATGA
TGCGCGAGCTGCGGCTGAGGCGCGTCAAGGAGCTCCTCCAGTCGGAGAAG
GCGCACGTGGCCGCGCTCGACATCGTGGTGGACGAGTACCTCTACCCGCT
CATCAGGGCCGACATTCTGCCGCACTCTACCCTCAAGGAGGTGTTCTGCA
ACCTCGAGCTGATCCGCAACTGGAACCAGACCTTCCTCTCGGCCCTCGAG
GCCCACCTCGAGTGCGGCGACACCTTCGGCGACCTCTTCATGGAGATG
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