mRNA_M-pyrifera_M_contig7961.18690.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7961.18690.1
Unique NamemRNA_M-pyrifera_M_contig7961.18690.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7961.18690.1 vs. uniprot
Match: D7FLU4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU4_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 4.980e-52
Identity = 95/149 (63.76%), Postives = 117/149 (78.52%), Query Frame = 1 
Query:    1 NRRSMPRHGYGGGTPVGNVLG--EGSVLDTKAALRRLYAAIDGRGMVAVKRNPHGKGRSRVMVRSRGKEGAVGWAHVLPPFSKKFIPVKELIGASRSSRVVTVTFKGREPVSIR----KNI--VLFETDRLTDALILEQGFISIALQQK 423
            +R+S+PR GYGG        G  E  V+D KA+LRRLYAAI+GRGMVA+KRNP+GKGRSRVMVRS+ KE ++GWAHVLPPF++KF+ VK+L GA RSSR+VTV F+ REPVS       N+  V+FETD+LTDALILEQGF+S+A  QK
Sbjct:   27 SRQSLPR-GYGGPMLAPGAGGGEELVVVDPKASLRRLYAAIEGRGMVAIKRNPNGKGRSRVMVRSKIKENSIGWAHVLPPFTRKFVNVKDLAGAQRSSRMVTVNFRNREPVSFLLPAFANVIQVMFETDKLTDALILEQGFVSLATLQK 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7961.18690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLU4_ECTSI4.980e-5263.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7961contigM-pyrifera_M_contig7961:1966..4400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7961.18690.1prot_M-pyrifera_M_contig7961.18690.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7961 1978..4400 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.0067406-UTR-M-pyrifera_M_contig7961:1965..19771622816700.0067406-UTR-M-pyrifera_M_contig7961:1965..1977Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7961 1966..1977 +
1692278127.3203971-UTR-M-pyrifera_M_contig7961:1965..19771692278127.3203971-UTR-M-pyrifera_M_contig7961:1965..1977Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7961 1966..1977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.0174103-CDS-M-pyrifera_M_contig7961:1977..23101622816700.0174103-CDS-M-pyrifera_M_contig7961:1977..2310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7961 1978..2310 +
1692278127.3337305-CDS-M-pyrifera_M_contig7961:1977..23101692278127.3337305-CDS-M-pyrifera_M_contig7961:1977..2310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7961 1978..2310 +
1622816700.030288-CDS-M-pyrifera_M_contig7961:4301..44001622816700.030288-CDS-M-pyrifera_M_contig7961:4301..4400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7961 4302..4400 +
1692278127.345734-CDS-M-pyrifera_M_contig7961:4301..44001692278127.345734-CDS-M-pyrifera_M_contig7961:4301..4400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7961 4302..4400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7961.18690.1

>prot_M-pyrifera_M_contig7961.18690.1 ID=prot_M-pyrifera_M_contig7961.18690.1|Name=mRNA_M-pyrifera_M_contig7961.18690.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MPRHGYGGGTPVGNVLGEGSVLDTKAALRRLYAAIDGRGMVAVKRNPHGK
GRSRVMVRSRGKEGAVGWAHVLPPFSKKFIPVKELIGASRSSRVVTVTFK
GREPVSIRKNIVLFETDRLTDALILEQGFISIALQQKNEQTLA*
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mRNA from alignment at M-pyrifera_M_contig7961:1966..4400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7961.18690.1 ID=mRNA_M-pyrifera_M_contig7961.18690.1|Name=mRNA_M-pyrifera_M_contig7961.18690.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2435bp|location=Sequence derived from alignment at M-pyrifera_M_contig7961:1966..4400+ (Macrocystis pyrifera P11B4 male)
AACAGGCGCTCCATGCCGCGTCACGGGTACGGGGGGGGCACACCTGTGGG
CAACGTGCTGGGGGAAGGGTCCGTGCTGGACACGAAGGCGGCGCTGAGAA
GGCTCTATGCGGCGATCGACGGGCGAGGGATGGTGGCGGTGAAGAGGAAC
CCTCACGGGAAGGGGCGGTCGAGGGTTATGGTTCGGTCGAGGGGCAAGGA
GGGCGCTGTCGGGTGGGCGCACGTGTTGCCCCCCTTCTCGAAGAAGTTTA
TCCCAGTGAAGGAGCTGATCGGCGCTAGCCGGTCGTCGCGGGTGGTGACG
GTCACCTTCAAGGGCCGTGAGCCGGTGAGCATACGTAAAAATATTGTTCG
GTAGCTGTGTCTCTTATCATAGGAAACTCGCGCCGCAGCAGAATATTCGG
AACTGTCGTCAACTTGTGTGCGTTGGCGCATCCCGGTCGGTCGGTCGGTC
GGTCGGTTCAGCCATCTCGAAAGGGGTACAGTACCTTTTTTTTTGGCGCC
CTCGTATTCATTGGAAACGCACGTTCGCTCGTTGGGGCCAAGGGGCTAAT
AGGAACAGGTCAATGCACATCGTGTAAGTTTTGTTTTAGCGTACCTAAAG
CATACAGGTACTGGTACGACGCTTCCCTTGCTTGTTTTCTATTTTTTTTT
CAAATATTCCTTCCGCTGGTACTGGTTATAGTAACCGAGGTAGTTGAGCT
GGACATTGCGGGTGGCCAAGGAAAATGATTTCAAGACCAGCCCCGGTATG
TTCACGGTGTCCCTCAATTTAATGTTTGATGCCATCTGTACGCAGCGCCT
GTTACCCCCCCCCCCATGATATCGAGTACACACCTCCATCGCTCTTGATG
AGTCACACGAAGAAAAATAATAATAACGCATAGGGCATACCAGGTATTAA
TAGTGGTTACTCAGCGCCGTGTAAGTTTTCGTTCGTGCCTGTTTGGCCTT
TCGTCCAGCACGCGGCATCAACATATTTTCGGCCAGCTTACGATCTACAG
ATAGATCATCGATCTATCTGTAGATGGTAGTCGGCCATTGTGAATTGTTG
TGAATTGTTGTGCAGGATATGTCTATCTGTATAGTACAGATCCAGTCCAC
CAAGGCATGTGCTAGATCACGGAGATCATACGGCTCCCACCGGGCGACAC
GAAGTAGACCGTACAGGTCACACAGATCAGGGATATGTCTTCCCGTCAAT
TTGGGTTGCAGAAAAAAATGTCACGATCGTAGTACGAAAACTGCATGCTG
CTGTATGTATCTAACGACTGCTGCACCAATTCTTGATGTGCTGTAGTTCA
GGTCTTCTACAACATCAAACAAAGTGCTTAGCCGCGCAACCATGATATAT
AGATGCCCGTCTATTAATAGTGTAAATCATAAACCCTTTTAGATGACCGC
AGTCCCGATTTGGGGACAAAGCAGTCTAATTCCAAGTGATTTGTCCCCGA
AACGGGACTGCAGTAGTATTAATAGAAGGGTTAACCCTTTTAGTGCCGCA
GTCCCGATTTGGGGACAAGGCAGTCTAATTCCAAGTGATTTGTCCCCAAA
TCGGGACTGCAGTCATATTAATAGAAGGGTTAAGTGGGGATCGGTGAATC
TGTCCGACGTGTGCCACGTCGTCTGGAGTGGACTTTTACCAGGGACCAAC
CATAGTAATCAGAACCCATCGGGTACACTAAAAACTAGTTATTCCTGTAT
TTTCACTAAGCTTATTTGGTCCTGATTGCTGTGTTCCCCCGTGATACTTG
CGTGTATATATAAATTAAGGTAATTTTGCAGGGTCCAGGGTCGGTGTAAC
TTGTTAGCTCTTCTGTTCTCAACTGGCAGTCGGTGTTTACGACAAGCCCA
CGCAGGCTGGCTTTTAGAGTCAGCAGCTGACCGCAGGCCGCGATGCACAG
CACGGCTAGCCTGCAGCAGGCGGGGTTAAAGCGTCACTACCTGGGGTGAC
GTATGCACGGCGCGACTAGCCTAGCCCGTACCAGGAATATGTTAATAGCA
TGTACACAGACACCCGCATATCGCATGCACCTTGATCGCACCAGCCTGAC
GTATGTATGCGCTCTCTGACAGCTTTTATTGCTTTAAGCAGCGTTGATAG
TCGTGCGCGTTTGCTCAATTGAAAGTGTTTCGTTCTCCTGCTGAGGACCA
GAGCTATGTTTCGGGACGTAGTGTGAGTGCCATCGCAACTGCACCCACCC
ACCCACCCACCCGCCCACACCTATCGACACCATTCATCCACCTTCCCACC
CAGTCACTCACTCACCCGTACAAATGCCCGACCACCCCTCTGGTTTATTT
TTGGTCCCGAACGACAATTATAACCGTCCCACTCAGGTTTTGTTCGAGAC
GGACCGCCTCACCGATGCTCTCATCCTGGAGCAAGGGTTCATCTCGATCG
CCTTGCAGCAGAAGAACGAGCAGACTCTCGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7961:1966..4400+

>mRNA_M-pyrifera_M_contig7961.18690.1 ID=mRNA_M-pyrifera_M_contig7961.18690.1|Name=mRNA_M-pyrifera_M_contig7961.18690.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig7961:1966..4400+ (Macrocystis pyrifera P11B4 male)
ATGCCGCGTCACGGGTACGGGGGGGGCACACCTGTGGGCAACGTGCTGGG
GGAAGGGTCCGTGCTGGACACGAAGGCGGCGCTGAGAAGGCTCTATGCGG
CGATCGACGGGCGAGGGATGGTGGCGGTGAAGAGGAACCCTCACGGGAAG
GGGCGGTCGAGGGTTATGGTTCGGTCGAGGGGCAAGGAGGGCGCTGTCGG
GTGGGCGCACGTGTTGCCCCCCTTCTCGAAGAAGTTTATCCCAGTGAAGG
AGCTGATCGGCGCTAGCCGGTCGTCGCGGGTGGTGACGGTCACCTTCAAG
GGCCGTGAGCCGGTGAGCATACGTAAAAATATTATGCCGCGTCACGGGTA
CGGGGGGGGCACACCTGTGGGCAACGTGCTGGGGGAAGGGTCCGTGCTGG
ACACGAAGGCGGCGCTGAGAAGGCTCTATGCGGCGATCGACGGGCGAGGG
ATGGTGGCGGTGAAGAGGAACCCTCACGGGAAGGGGCGGTCGAGGGTTAT
GGTTCGGTCGAGGGGCAAGGAGGGCGCTGTCGGGTGGGCGCACGTGTTGC
CCCCCTTCTCGAAGAAGTTTATCCCAGTGAAGGAGCTGATCGGCGCTAGC
CGGTCGTCGCGGGTGGTGACGGTCACCTTCAAGGGCCGTGAGCCGGTGAG
CATACGTAAAAATATTGTTTTGTTCGAGACGGACCGCCTCACCGATGCTC
TCATCCTGGAGCAAGGGTTCATCTCGATCGCCTTGCAGCAGAAGAACGAG
CAGACTCTCGCGTGAGTTTTGTTCGAGACGGACCGCCTCACCGATGCTCT
CATCCTGGAGCAAGGGTTCATCTCGATCGCCTTGCAGCAGAAGAACGAGC
AGACTCTCGCGTGA
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