mRNA_M-pyrifera_M_contig79606.18688.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79606.18688.1
Unique NamemRNA_M-pyrifera_M_contig79606.18688.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79606.18688.1 vs. uniprot
Match: A0A2E7KJM9_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJM9_9PLAN)

HSP 1 Score: 514 bits (1323), Expect = 9.060e-180
Identity = 271/274 (98.91%), Postives = 272/274 (99.27%), Query Frame = 1
Query:    1 PDYRWIEDRHLIYLTHFKKIREVDVTLTRGISDTSQLKHLQALPELAILAIGIGKNSEAPLDRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDQLYLSGDPSQLQPADLACLKNMSSLKKITLQVDLVSDDLWAALGNVTSLEEISFNRGWPPQTEKPQFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXXRHLSHLKKLSFYGSKIDMDTAVELHRFIPQCRIEDNWCCGCMTIDADRSVTQK 822
            PDYRWIEDRHLIYLTHFKKIREVDVTLTRGISDTSQLKHLQALPELAILAIGIGKNSEAPL RSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDQLYLSGDPSQLQPADLACLKNMSSLKKIT+QVDLVSDDLWAALGNVTSLEEISFNRGWPPQTEKPQFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXXRHLSHLKKLSFYGSKIDMDTAVELHRFIPQCRIEDNWCCGCMTI ADRSVTQK
Sbjct:  248 PDYRWIEDRHLIYLTHFKKIREVDVTLTRGISDTSQLKHLQALPELAILAIGIGKNSEAPLHRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDQLYLSGDPSQLQPADLACLKNMSSLKKITVQVDLVSDDLWAALGNVTSLEEISFNRGWPPQTEKPQFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXXRHLSHLKKLSFYGSKIDMDTAVELHRFIPQCRIEDNWCCGCMTIYADRSVTQK 521          
BLAST of mRNA_M-pyrifera_M_contig79606.18688.1 vs. uniprot
Match: A0A2E2BVH4_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BVH4_9PLAN)

HSP 1 Score: 437 bits (1123), Expect = 6.240e-149
Identity = 233/265 (87.92%), Postives = 239/265 (90.19%), Query Frame = 1
Query:    1 PDYRWIEDRHLIYLTHFKKIREVDVTLTRGISDTSQLKHLQALPELAILAIGIGKNSEAPLDRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDQLYLSGDPSQLQPADLACLKNMSSLKKITLQVDLVSDDLWAALGNVTSLEEISFNRGWPPQTEKPQFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXXRHLSHLKKLSFYGSKIDMDTAVELHRFIPQCRIEDNWCCGCMTI 795
            P YRWIEDRHLIYLTHFKKIREVDVTLTRG SDTSQLKHLQALPEL ILAIGIG+NSE PLDRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVD+LYLSGDP QLQPADLACLKNMSSLKKIT+QVDLVSD LWAALGNVTSLEEISFNRGWPPQTEKPQFSM SLK L+NLPHLKGLDLNGFPVTDEGLGYLGQCR+L  XXXXXXXXXXXXXXXX         SFYGSKID   A+ELH  IPQC IEDNWCCGCM I
Sbjct:  285 PGYRWIEDRHLIYLTHFKKIREVDVTLTRGTSDTSQLKHLQALPELEILAIGIGENSEGPLDRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDKLYLSGDPGQLQPADLACLKNMSSLKKITVQVDLVSDALWAALGNVTSLEEISFNRGWPPQTEKPQFSMASLKHLENLPHLKGLDLNGFPVTDEGLGYLGQCRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXSFYGSKIDESAAIELHEHIPQCWIEDNWCCGCMAI 549          
BLAST of mRNA_M-pyrifera_M_contig79606.18688.1 vs. uniprot
Match: A0A517VDM4_9PLAN (Leucine Rich repeats (2 copies) n=7 Tax=Gimesia TaxID=1649453 RepID=A0A517VDM4_9PLAN)

HSP 1 Score: 377 bits (969), Expect = 4.690e-126
Identity = 204/275 (74.18%), Postives = 225/275 (81.82%), Query Frame = 1
Query:    1 PDYRWIEDRHLIYLTHFKKIREVDVTLTRGISDTSQLKHLQALPELAILAIGIGKNSEA-PLDRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDQLYLSGDPSQLQPADLACLKNMSSLKKITLQVDLVSDDLWAALGNVTSLEEISFNRGWPPQTEKPQFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXXRHLSHLKKLSFYGSKIDMDTAVELHRFIPQCRIEDNWCCGCMTIDADRSVTQK 822
            PD R I+D  L YLTH ++I+++++ LTRGISDTSQLK L+ LPEL  L+I +GK SE  PLDRSGLLALAK+P LKEL +G +N P LEAISHC QV +L L+ D SQ QP DLA LK MS LK +T+Q+ LVSDDLWA LG V SLEEISFNRGWPPQ E P FSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXX   RHLS LKK SFYGSKID + A ELH+FIPQC IEDNWCCGCMTI ADR  TQK
Sbjct:  252 PD-RSIKDDQLSYLTHIRQIKKLNLVLTRGISDTSQLKQLRTLPELETLSISLGKRSEGDPLDRSGLLALAKIPALKELGIGLVNVPVLEAISHCTQVQKLNLNVDSSQFQPTDLAYLKEMSRLKDVTVQIALVSDDLWATLGKVKSLEEISFNRGWPPQKEPPPFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXLQLRHLSQLKKFSFYGSKIDREPAEELHQFIPQCEIEDNWCCGCMTIYADRRFTQK 525          
BLAST of mRNA_M-pyrifera_M_contig79606.18688.1 vs. uniprot
Match: A0A517W716_9PLAN (Leucine Rich repeats (2 copies) n=2 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W716_9PLAN)

HSP 1 Score: 369 bits (948), Expect = 6.980e-123
Identity = 204/272 (75.00%), Postives = 223/272 (81.99%), Query Frame = 1
Query:   10 RWIEDRHLIYLTHFKKIREVDVTLTRGISDTSQLKHLQALPELAILAIGIGKNSEA-PLDRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDQLYLSGDPSQLQPADLACLKNMSSLKKITLQVDLVSDDLWAALGNVTSLEEISFNRGWPPQTEKPQFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXXRHLSHLKKLSFYGSKIDMDTAVELHRFIPQCRIEDNWCCGCMTIDADRSVTQK 822
            R I+D  L YL H  +I++++V LTRGISDTSQLK L+ LPEL  L+I +GK+S   PLDRSGLLALAK+PTLKEL +G +N P LEAISHC QV +L L+ D SQ QP DL  LK MSSLK +T+Q+ LVSDDLWA LG V SLEEISFNRGWPPQ E P FSM SLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXX         +FYGSKIDMDTAVELHRFIPQCRIEDNWCCGCMTI ADRSVTQK
Sbjct:  254 RLIKDDQLSYLIHISQIKKLNVVLTRGISDTSQLKQLRMLPELETLSISLGKSSAGVPLDRSGLLALAKMPTLKELGIGLVNVPVLEAISHCTQVQKLNLNVDRSQFQPTDLVYLKEMSSLKDLTVQIALVSDDLWATLGKVKSLEEISFNRGWPPQKEPPPFSMASLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXXXXXXXXXXXNFYGSKIDMDTAVELHRFIPQCRIEDNWCCGCMTIYADRSVTQK 525          
BLAST of mRNA_M-pyrifera_M_contig79606.18688.1 vs. uniprot
Match: A0A518FPY3_9PLAN (Leucine Rich repeats (2 copies) n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FPY3_9PLAN)

HSP 1 Score: 275 bits (703), Expect = 2.690e-86
Identity = 162/275 (58.91%), Postives = 196/275 (71.27%), Query Frame = 1
Query:   16 IEDRHLIYLTHFKKIREVDVTLTRGISDTSQLKHLQALPELAILAIGIGKNSEAPLDRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDQLYLSGDPSQLQPADLACLKNMSSLKKITLQVDLVSDDLWAALGNVTSLEEISFNRGWPP------QTEKPQFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXXRHLSHLKKLSFYGSKIDMDTAVELHRFIPQCRIEDNWCCGCMTIDADRSVTQK 822
            I+D  L YLTHFKKIR++ V LT+G SDTS+LK+LQALPEL  L + + +  E PLD +GLL+LAKVP+LK+L+V  ++A ALEA+SHC QV++L L  +  +L PADL CLK MS+L+ I L+  +V D LWA LG + +LEEI  +  WP       Q E P F M SLK L  LPHLK L+L+ F +TDEGL Y+   R    XXXXXXXXXXXXXXXX         +FYGSKIDMDTA ELHRFIPQCRIEDNWCCGCMTI AD+  TQK
Sbjct:  228 IKDSQLKYLTHFKKIRKLTVELTQGNSDTSRLKYLQALPELESLYLWLRERPEGPLDPTGLLSLAKVPSLKQLKVTAVDAQALEAVSHCTQVEELDLQSNRKRLSPADLHCLKTMSNLRVINLRRSMVCDRLWAELGKLKTLEEIHIDT-WPSPGKDSAQKETPAFQMASLKHLTQLPHLKYLELDNFDITDEGLSYISTFREXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFYGSKIDMDTAEELHRFIPQCRIEDNWCCGCMTIYADQRFTQK 501          
BLAST of mRNA_M-pyrifera_M_contig79606.18688.1 vs. uniprot
Match: A0A518I6Z2_9PLAN (Leucine Rich repeats (2 copies) n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6Z2_9PLAN)

HSP 1 Score: 178 bits (452), Expect = 8.200e-49
Identity = 123/266 (46.24%), Postives = 155/266 (58.27%), Query Frame = 1
Query:   13 WIEDRHLIYLTHFKKIREVDVTLTRGISDTSQLKHLQALPELAILAIGIGKNSEAPLDRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDQLYLSGDPSQLQPADLACLKNMSSLKKITLQVDLVSDDLWAALGNVTSLEEISFNRGW---------PPQTEKPQFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQCRTLERXXXXXXXXXXXXXXXXRHLSHLKKLSFYGSKIDMDTAVELHRFIPQCRIEDNWCCG 783
            +++D  L+YL H KKI+ + V LT+G  DTSQLK LQ L EL  L++G  +      D SGLLALAK+P LK++    ++   LEAISHCAQ+ +L L+G  +Q+ P  L CLKNM SLK I L+  L     + ALG V SLE I+ + GW         PP    P F M+SLK LQ +PHLK L L+   +TDE L           XXXXXXXXXXXXXXXX               ID++ A +LH+FIP C IED W  G
Sbjct:  243 YVKDTDLVYLRHLKKIKTLKVVLTKGFRDTSQLKQLQDLRELEYLSLGQKEVFVDSFDNSGLLALAKLPALKKIEAARVDDRYLEAISHCAQLTELDLTGYGNQITPEGLTCLKNMRSLKSIDLERPLARHKTFEALGQVPSLERIALS-GWVWRYRGKSPPPVGNAPLFEMSSLKHLQQMPHLKELKLDYLDLTDEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLEAAYQLHQFIPDCVIEDIWFAG 507          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79606.18688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E7KJM9_9PLAN9.060e-18098.91Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A2E2BVH4_9PLAN6.240e-14987.92Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517VDM4_9PLAN4.690e-12674.18Leucine Rich repeats (2 copies) n=7 Tax=Gimesia Ta... [more]
A0A517W716_9PLAN6.980e-12375.00Leucine Rich repeats (2 copies) n=2 Tax=Gimesia ch... [more]
A0A518FPY3_9PLAN2.690e-8658.91Leucine Rich repeats (2 copies) n=1 Tax=Gimesia pa... [more]
A0A518I6Z2_9PLAN8.200e-4946.24Leucine Rich repeats (2 copies) n=2 Tax=Gimesia fu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79606contigM-pyrifera_M_contig79606:3..827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score357.1
Seed ortholog evalue7.5e-96
Seed eggNOG ortholog344747.PM8797T_05540
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,COG4886@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size825
Cds size825
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.9106233-CDS-M-pyrifera_M_contig79606:2..8271622816699.9106233-CDS-M-pyrifera_M_contig79606:2..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79606 3..827 +
1692278127.27111-CDS-M-pyrifera_M_contig79606:2..8271692278127.27111-CDS-M-pyrifera_M_contig79606:2..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79606 3..827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79606.18688.1prot_M-pyrifera_M_contig79606.18688.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79606 3..827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79606.18688.1

>prot_M-pyrifera_M_contig79606.18688.1 ID=prot_M-pyrifera_M_contig79606.18688.1|Name=mRNA_M-pyrifera_M_contig79606.18688.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=275bp
PDYRWIEDRHLIYLTHFKKIREVDVTLTRGISDTSQLKHLQALPELAILA
IGIGKNSEAPLDRSGLLALAKVPTLKELRVGPINAPALEAISHCAQVDQL
YLSGDPSQLQPADLACLKNMSSLKKITLQVDLVSDDLWAALGNVTSLEEI
SFNRGWPPQTEKPQFSMTSLKQLQNLPHLKGLDLNGFPVTDEGLGYLGQC
RTLERLELNNAPITNAGLLQLRHLSHLKKLSFYGSKIDMDTAVELHRFIP
QCRIEDNWCCGCMTIDADRSVTQK*
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mRNA from alignment at M-pyrifera_M_contig79606:3..827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79606.18688.1 ID=mRNA_M-pyrifera_M_contig79606.18688.1|Name=mRNA_M-pyrifera_M_contig79606.18688.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=825bp|location=Sequence derived from alignment at M-pyrifera_M_contig79606:3..827+ (Macrocystis pyrifera P11B4 male)
CCAGATTACCGGTGGATTGAAGATCGTCACCTGATTTATCTGACTCATTT TAAAAAGATCCGGGAAGTGGATGTGACTCTCACACGCGGAATCAGCGATA CCTCGCAACTGAAACACCTGCAGGCGCTGCCTGAACTGGCGATTCTCGCG ATCGGTATCGGGAAAAACTCTGAAGCTCCGCTCGACCGATCGGGGTTGCT TGCCCTGGCAAAGGTTCCCACCCTGAAAGAATTGAGGGTGGGGCCCATCA ATGCGCCAGCTCTGGAAGCAATCAGCCATTGTGCCCAGGTCGATCAGCTG TATCTCAGTGGAGATCCCAGTCAGCTTCAGCCAGCCGACCTGGCATGTCT GAAAAATATGAGCAGCCTCAAGAAAATCACTCTGCAGGTGGATCTCGTTT CGGATGATCTCTGGGCTGCACTGGGGAACGTGACATCACTCGAAGAAATT TCGTTTAACAGGGGGTGGCCGCCACAAACCGAAAAGCCGCAGTTTTCCAT GACCAGCCTGAAACAGCTCCAGAACTTACCGCATCTCAAGGGGCTGGACC TGAATGGTTTTCCTGTGACCGATGAGGGACTGGGTTACCTCGGTCAATGT CGAACTCTCGAAAGACTGGAGCTGAATAATGCGCCGATTACGAATGCGGG ACTGCTGCAGTTACGCCATTTGTCTCACCTGAAGAAGCTCAGTTTTTATG GCAGCAAAATTGACATGGACACCGCTGTAGAACTGCATCGATTCATTCCC CAGTGTCGCATTGAAGATAACTGGTGCTGTGGCTGTATGACCATTGATGC CGATCGAAGTGTCACTCAGAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79606:3..827+

>mRNA_M-pyrifera_M_contig79606.18688.1 ID=mRNA_M-pyrifera_M_contig79606.18688.1|Name=mRNA_M-pyrifera_M_contig79606.18688.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1650bp|location=Sequence derived from alignment at M-pyrifera_M_contig79606:3..827+ (Macrocystis pyrifera P11B4 male)
CCAGATTACCGGTGGATTGAAGATCGTCACCTGATTTATCTGACTCATTT
TAAAAAGATCCGGGAAGTGGATGTGACTCTCACACGCGGAATCAGCGATA
CCTCGCAACTGAAACACCTGCAGGCGCTGCCTGAACTGGCGATTCTCGCG
ATCGGTATCGGGAAAAACTCTGAAGCTCCGCTCGACCGATCGGGGTTGCT
TGCCCTGGCAAAGGTTCCCACCCTGAAAGAATTGAGGGTGGGGCCCATCA
ATGCGCCAGCTCTGGAAGCAATCAGCCATTGTGCCCAGGTCGATCAGCTG
TATCTCAGTGGAGATCCCAGTCAGCTTCAGCCAGCCGACCTGGCATGTCT
GAAAAATATGAGCAGCCTCAAGAAAATCACTCTGCAGGTGGATCTCGTTT
CGGATGATCTCTGGGCTGCACTGGGGAACGTGACATCACTCGAAGAAATT
TCGTTTAACAGGGGGTGGCCGCCACAAACCGAAAAGCCGCAGTTTTCCAT
GACCAGCCTGAAACAGCTCCAGAACTTACCGCATCTCAAGGGGCTGGACC
TGAATGGTTTTCCTGTGACCGATGAGGGACTGGGTTACCTCGGTCAATGT
CGAACTCTCGAAAGACTGGAGCTGAATAATGCGCCGATTACGAATGCGGG
ACTGCTGCAGTTACGCCATTTGTCTCACCTGAAGAAGCTCAGTTTTTATG
GCAGCAAAATTGACATGGACACCGCTGTAGAACTGCATCGATTCATTCCC
CAGTGTCGCATTGAAGATAACTGGTGCTGTGGCTGTATGACCATTGATGC
CGATCGAAGTGTCACTCAGAAATAACCAGATTACCGGTGGATTGAAGATC
GTCACCTGATTTATCTGACTCATTTTAAAAAGATCCGGGAAGTGGATGTG
ACTCTCACACGCGGAATCAGCGATACCTCGCAACTGAAACACCTGCAGGC
GCTGCCTGAACTGGCGATTCTCGCGATCGGTATCGGGAAAAACTCTGAAG
CTCCGCTCGACCGATCGGGGTTGCTTGCCCTGGCAAAGGTTCCCACCCTG
AAAGAATTGAGGGTGGGGCCCATCAATGCGCCAGCTCTGGAAGCAATCAG
CCATTGTGCCCAGGTCGATCAGCTGTATCTCAGTGGAGATCCCAGTCAGC
TTCAGCCAGCCGACCTGGCATGTCTGAAAAATATGAGCAGCCTCAAGAAA
ATCACTCTGCAGGTGGATCTCGTTTCGGATGATCTCTGGGCTGCACTGGG
GAACGTGACATCACTCGAAGAAATTTCGTTTAACAGGGGGTGGCCGCCAC
AAACCGAAAAGCCGCAGTTTTCCATGACCAGCCTGAAACAGCTCCAGAAC
TTACCGCATCTCAAGGGGCTGGACCTGAATGGTTTTCCTGTGACCGATGA
GGGACTGGGTTACCTCGGTCAATGTCGAACTCTCGAAAGACTGGAGCTGA
ATAATGCGCCGATTACGAATGCGGGACTGCTGCAGTTACGCCATTTGTCT
CACCTGAAGAAGCTCAGTTTTTATGGCAGCAAAATTGACATGGACACCGC
TGTAGAACTGCATCGATTCATTCCCCAGTGTCGCATTGAAGATAACTGGT
GCTGTGGCTGTATGACCATTGATGCCGATCGAAGTGTCACTCAGAAATAA
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