mRNA_M-pyrifera_M_contig79598.18683.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79598.18683.1
Unique NamemRNA_M-pyrifera_M_contig79598.18683.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79598.18683.1 vs. uniprot
Match: A0A3M2CRY5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CRY5_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 6.450e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   64 TGEEVTLKVAKFGVGGAARRGDWVGIQVNLLDRGSTARDIILRVAI 201
            T EEVT++  ++G+G AAR GDW GIQVN+LD     RDI+LRVA+
Sbjct:   22 TAEEVTVEAVQYGIGDAARAGDWAGIQVNVLDSAPEQRDILLRVAV 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79598.18683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3M2CRY5_9BACT6.450e-958.70Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79598contigM-pyrifera_M_contig79598:107..310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.5840921-CDS-M-pyrifera_M_contig79598:106..3101622816699.5840921-CDS-M-pyrifera_M_contig79598:106..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79598 107..310 +
1692278127.0208733-CDS-M-pyrifera_M_contig79598:106..3101692278127.0208733-CDS-M-pyrifera_M_contig79598:106..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79598 107..310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79598.18683.1prot_M-pyrifera_M_contig79598.18683.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79598 107..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79598.18683.1

>prot_M-pyrifera_M_contig79598.18683.1 ID=prot_M-pyrifera_M_contig79598.18683.1|Name=mRNA_M-pyrifera_M_contig79598.18683.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MLVLLLMAPDASAQGVFDEQDTGEEVTLKVAKFGVGGAARRGDWVGIQVN
LLDRGSTARDIILRVAIP
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mRNA from alignment at M-pyrifera_M_contig79598:107..310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79598.18683.1 ID=mRNA_M-pyrifera_M_contig79598.18683.1|Name=mRNA_M-pyrifera_M_contig79598.18683.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig79598:107..310+ (Macrocystis pyrifera P11B4 male)
ATGCTTGTGCTTCTGTTGATGGCTCCCGACGCCTCGGCGCAGGGTGTTTT
CGACGAGCAGGACACAGGGGAAGAAGTCACCCTCAAAGTCGCAAAGTTCG
GAGTCGGCGGCGCCGCGCGGCGCGGCGACTGGGTCGGGATCCAAGTCAAT
CTGCTCGATCGCGGCTCGACAGCTCGCGACATCATCCTTCGCGTCGCGAT
CCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79598:107..310+

>mRNA_M-pyrifera_M_contig79598.18683.1 ID=mRNA_M-pyrifera_M_contig79598.18683.1|Name=mRNA_M-pyrifera_M_contig79598.18683.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig79598:107..310+ (Macrocystis pyrifera P11B4 male)
ATGCTTGTGCTTCTGTTGATGGCTCCCGACGCCTCGGCGCAGGGTGTTTT
CGACGAGCAGGACACAGGGGAAGAAGTCACCCTCAAAGTCGCAAAGTTCG
GAGTCGGCGGCGCCGCGCGGCGCGGCGACTGGGTCGGGATCCAAGTCAAT
CTGCTCGATCGCGGCTCGACAGCTCGCGACATCATCCTTCGCGTCGCGAT
CCCCATGCTTGTGCTTCTGTTGATGGCTCCCGACGCCTCGGCGCAGGGTG
TTTTCGACGAGCAGGACACAGGGGAAGAAGTCACCCTCAAAGTCGCAAAG
TTCGGAGTCGGCGGCGCCGCGCGGCGCGGCGACTGGGTCGGGATCCAAGT
CAATCTGCTCGATCGCGGCTCGACAGCTCGCGACATCATCCTTCGCGTCG
CGATCCCC
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