mRNA_M-pyrifera_M_contig79546.18671.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79546.18671.1
Unique NamemRNA_M-pyrifera_M_contig79546.18671.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7X6SLI4_9ACTN (Pilus assembly protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6SLI4_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 1.290e-25
Identity = 65/172 (37.79%), Postives = 85/172 (49.42%), Query Frame = 1
Query:    4 LMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMA-DDAITMIVIFRADGPSAPVPP----ACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFFGDDQTLTSTTILRIEP 504
            L++FG IE  L FR  +       D+AR AA  G D NAD  ++    +S  P+   +A+T I IFRA GP +        AC TGS      CN Y           F C P    DRFWCP+    +R V+   PPDY+G+YIE+E   +TG  G   T T   + R+EP
Sbjct:   28 LIVFGTIEFGLAFRSYLTTTAAARDSARYAATMGKDVNADFFIISDALNSLGPIGGSEAVTTISIFRATGPDSTTASGALAACRTGSVAGL--CNTYRGPDLTTDPYRFACRPTA-ADRFWCPT----SRKVNLSDPPDYVGIYIEVEHEGLTGVLGSSMTFTEEVVTRLEP 192          
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A520Y1E1_9ACTN (Pilus assembly protein n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y1E1_9ACTN)

HSP 1 Score: 77.8 bits (190), Expect = 1.280e-14
Identity = 59/170 (34.71%), Postives = 87/170 (51.18%), Query Frame = 1
Query:    1 FLMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIVIFRADGPSAPVPPACLTGS---QDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFFGDDQTLTSTTILRIE 501
            F +IFG IEM+LMF+  +A+  V   AAR A+I+ +D NAD  +L+ I D+ S   +  I M++I+ AD   +PVP  C   S   Q S   CN Y     D      G  P+         ++R   ++         IG+YIE + + +TGF  D  TL++TT+  IE
Sbjct:   41 FAIIFGGIEMTLMFQSNLAIQDVSRSAARVASIARDDANADQLILQEI-DARSGTVNGDIAMVIIYAADTLDSPVPSQCFNASGIAQTSPGNCNAYNAEWVDVAA---GSAPVVTPGTGITDAQRKQWQN---------IGIYIEYDYTFVTGFI-DTTTLSATTVEVIE 196          
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7Y2N9H4_9ACTN (Pilus assembly protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N9H4_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 4.800e-14
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 FLMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIVIFRADGPSAPVPPACLT-GSQ------------------DSTDQCNRYLPMQFDETL 306
            FL++FGI+EM  +FR+ +       +A+RAA++ G+ ++AD+ ++       + M  + + M+V+FRADGPSA VPP+C+T GSQ                  D T +CN YLP  F  TL
Sbjct:   28 FLILFGILEMGFLFRNYLTTANTAGEASRAASVFGSAEDADYQIMRSAEHGIAAMGLENLEMMVVFRADGPSAVVPPSCVTSGSQTRTTPAANNTDDETHPAADGTAECNVYLPGDFALTL 148          
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A6A0QUP0_9BACT (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A6A0QUP0_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 3.190e-10
Identity = 55/176 (31.25%), Postives = 82/176 (46.59%), Query Frame = 1
Query:    4 LMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMAD-DAITMIVIFRADGPSAPVPPACLTGSQDSTDQCNRYL--PMQFDETLDSFGCDPLKN-----LDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFF-GDDQTLTSTTILRIEP 504
            +++FGI+E  ++FR+R+ +      AAR  A  G    AD  +L+ +        D D +  + IFRAD P+        TG++ S D  N Y   P+ F     +   DP            W PS+RV T D   GG  D +G+ +    S ITGF  G D+ L    ++R+EP
Sbjct:   27 ILVFGIVEYGMLFRERLTIAAATSSAARTGATMGKRDAADFRMLQALEAGLYDQVDSDVLISVDIFRAD-PN--------TGAKIS-DDVNTYAFDPINFPSCHWNPCPDPTSGSYYGFAGAGWIPSDRVTTLDAVGGGL-DVLGIEVTYHHSDITGFIPGVDRDLVERALIRLEP 191          
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7Y2D836_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2D836_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 1.660e-9
Identity = 49/177 (27.68%), Postives = 80/177 (45.20%), Query Frame = 1
Query:    4 LMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIVIFRADGPSAPVPPAC--LTGSQDSTDQCNRY-----LPMQFDETLDSFGCDPLKN--LDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFFG-DDQTLTSTTILRIEP 504
            L++FG++E  L +RD   +       AR  +  G +  AD++VL  I  ++  +  + I  +VI+ A      +P +C   TG   S   CN Y     L +   + L +   D  KN  L RFWCP  R             + GV++E+     +G F   +  ++ T ++RIEP
Sbjct:   29 LLVFGLLEFGLAWRDSQTVATAARSGARVGSNLGANPEADYNVLLSILAASEAVGVENINYVVIYNAADLDGEIPASCQNATGFIPSAGNCNVYTTADLLALSPSDFLLNVADDDCKNDSLHRFWCPLSRTSVSQYDL----KHFGVHVEITHEATSGVFPIANLEISDTAVMRIEP 201          
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7C0WLQ4_9ACTN (Pilus assembly protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7C0WLQ4_9ACTN)

HSP 1 Score: 60.8 bits (146), Expect = 3.300e-8
Identity = 49/153 (32.03%), Postives = 72/153 (47.06%), Query Frame = 1
Query:    1 FLMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIV---IFRADGPSAPVPPACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITG 450
            F+++FGI+E  L FRDR+ +      +AR  +  G+D  AD+ +L  +  S   +   A+ ++    ++ ADG   PV  +C TG  D   +CNRYL      T D   C    N    W  S    TRDV+  G  D I V +      +TG
Sbjct:   29 FMLLFGIVEFGLAFRDRLTVTNATQGSARVVSAMGDDPMADYEMLLSLEQSLGILPGQAVGIVRYVDVYLADGNGDPVG-SCSTGGGD---RCNRYLWAPSGGTCDWVPCPDADNGYGSWPWSP--TTRDVALPGL-DVIAVRVTYAHEWVTG 174          
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A3E0P7X6_9ACTN (Pilus assembly protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3E0P7X6_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 6.590e-7
Identity = 51/172 (29.65%), Postives = 80/172 (46.51%), Query Frame = 1
Query:    4 LMIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIVIFRADGPSAPVPPACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNL---DRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGF--FGDDQTLTSTTILRIEP 504
            L++ GI+E+ L F+D + +  +  + AR  A++GND +AD  +L+ +    +      I  + I++AD           TG+Q +T+    Y     D TL +    P          + P  R     VS+  P D IGV I L+RS +T F  F     +  TTI R+EP
Sbjct:   26 LVVIGILELGLAFKDYLTVSYLSREGARLGALAGNDADADCTILKGLGAIVTSGDLARINRVEIYKADNS---------TGAQGATNTA--YYQTGQDPTLCNVPALPSDGWTVNSSAYPPLNR--NTSVSATQPLDIIGVRIILDRSWVTNFPPFSGSFQVNETTITRMEP 184          
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A6G6WAX4_9ACTN (Pilus assembly protein n=1 Tax=Nocardioides anomalus TaxID=2712223 RepID=A0A6G6WAX4_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 3.320e-6
Identity = 55/187 (29.41%), Postives = 86/187 (45.99%), Query Frame = 1
Query:    4 LMIFGIIEMSLMFRDRVALD--------------GVGHDAARAAAISGNDQNADHHVLEVIADS----ASPMADDAITMIVIFRADGPSAPVPPACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFFGDDQTLTSTTILRIEPRD 510
            +++FGIIEMSL+ RD +A                G G    +A   +   Q A   V +V AD+     S M  D+I  I+++RA+    P+P +  + +  STD C +Y+   +D+ LD F     + L   W    R +   V+       +GV +      ITGFFG+   L   T+++ EP D
Sbjct:   29 ILVFGIIEMSLLMRDVMATSSAVRVGARMASTAAGAGPGTCKAGDTTCTPQKAPR-VAQVAADAIQRAGSAMPKDSIDWILVYRANTSGYPLPDSNKSLTTCSTD-CVKYV---WDKDLDKF-----RYLSGQW--DSRSINACVNDASLMA-VGVAMRSHHDWITGFFGNGVDLEERTVMQFEPLD 202          
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Match: A0A7V5C2I4_9ACTN (Pilus assembly protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V5C2I4_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 5.680e-6
Identity = 54/186 (29.03%), Postives = 76/186 (40.86%), Query Frame = 1
Query:   10 IFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSASPMADDAITMIV---IFRADGPSAPVPPACLTGSQDSTDQCNRYLPMQFDETLDSFGCDPLKNLDRF-----WCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFF----------GDDQT--LTSTTILRIEPR 507
            +FGIIE+ + FRDR+ +      AAR     G   +AD  +L+    S S + +  + +I    IF AD    PV   C  G+      CNRY     D T       P  + D       W P+ER +       G  D +GV +    S ITG F          G   T     T ++R+EP+
Sbjct:   25 LFGIIELGIAFRDRLTIGNATQTAARVGTAMGQQPDADLRILQSFEQSLSALPNSGVGIIKYVDIFEADAYGNPVG-GCPGGN------CNRYFYTYVDGTGPLCDWTPCPDPDAGYSGWNWAPNERSILV-----GDLDVMGVRMTYGHSWITGGFLPLPDVACDSGSPPTNCWADTALMRMEPQ 198          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79546.18671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7X6SLI4_9ACTN1.290e-2537.79Pilus assembly protein n=1 Tax=Actinomycetia bacte... [more]
A0A520Y1E1_9ACTN1.280e-1434.71Pilus assembly protein n=2 Tax=Acidimicrobiales ba... [more]
A0A7Y2N9H4_9ACTN4.800e-1437.19Pilus assembly protein n=1 Tax=Acidimicrobiales ba... [more]
A0A6A0QUP0_9BACT3.190e-1031.25Uncharacterized protein n=1 Tax=Armatimonadetes ba... [more]
A0A7Y2D836_9ACTN1.660e-927.68Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A7C0WLQ4_9ACTN3.300e-832.03Pilus assembly protein n=2 Tax=Bacteria TaxID=2 Re... [more]
A0A3E0P7X6_9ACTN6.590e-729.65Pilus assembly protein n=1 Tax=Actinomycetia bacte... [more]
A0A6G6WAX4_9ACTN3.320e-629.41Pilus assembly protein n=1 Tax=Nocardioides anomal... [more]
A0A7V5C2I4_9ACTN5.680e-629.03Pilus assembly protein n=1 Tax=Actinomycetia bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79546contigM-pyrifera_M_contig79546:449..964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size510
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.9245112-CDS-M-pyrifera_M_contig79546:448..9581622816698.9245112-CDS-M-pyrifera_M_contig79546:448..958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79546 449..958 -
1692278126.608552-CDS-M-pyrifera_M_contig79546:448..9581692278126.608552-CDS-M-pyrifera_M_contig79546:448..958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79546 449..958 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.9374871-UTR-M-pyrifera_M_contig79546:958..9641622816698.9374871-UTR-M-pyrifera_M_contig79546:958..964Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79546 959..964 -
1692278126.6182792-UTR-M-pyrifera_M_contig79546:958..9641692278126.6182792-UTR-M-pyrifera_M_contig79546:958..964Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79546 959..964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79546.18671.1prot_M-pyrifera_M_contig79546.18671.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79546 449..958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79546.18671.1

>prot_M-pyrifera_M_contig79546.18671.1 ID=prot_M-pyrifera_M_contig79546.18671.1|Name=mRNA_M-pyrifera_M_contig79546.18671.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MIFGIIEMSLMFRDRVALDGVGHDAARAAAISGNDQNADHHVLEVIADSA
SPMADDAITMIVIFRADGPSAPVPPACLTGSQDSTDQCNRYLPMQFDETL
DSFGCDPLKNLDRFWCPSERVVTRDVSSGGPPDYIGVYIELERSMITGFF
GDDQTLTSTTILRIEPRDL*
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mRNA from alignment at M-pyrifera_M_contig79546:449..964-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79546.18671.1 ID=mRNA_M-pyrifera_M_contig79546.18671.1|Name=mRNA_M-pyrifera_M_contig79546.18671.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig79546:449..964- (Macrocystis pyrifera P11B4 male)
TTCCTCATGATCTTCGGGATCATCGAGATGAGCCTGATGTTCCGTGATCG GGTCGCGCTCGATGGCGTCGGCCACGACGCCGCTCGGGCTGCGGCGATCA GCGGGAACGATCAGAACGCCGACCACCACGTGCTCGAGGTCATCGCGGAC AGTGCGTCGCCGATGGCCGATGACGCCATCACCATGATCGTCATCTTCCG AGCAGATGGACCGTCGGCTCCGGTGCCGCCAGCCTGCCTCACCGGCTCGC AGGACAGCACCGACCAGTGCAACCGATACCTCCCGATGCAGTTCGACGAG ACGCTGGATTCCTTCGGCTGTGATCCGCTCAAGAATCTCGACCGGTTCTG GTGCCCGAGCGAACGTGTCGTCACCCGTGACGTGTCCAGCGGCGGCCCAC CCGACTACATCGGGGTGTACATCGAACTCGAACGCTCGATGATCACGGGG TTCTTCGGTGACGACCAGACACTCACCTCGACCACGATCTTGCGGATCGA ACCGAGGGACCTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79546:449..964-

>mRNA_M-pyrifera_M_contig79546.18671.1 ID=mRNA_M-pyrifera_M_contig79546.18671.1|Name=mRNA_M-pyrifera_M_contig79546.18671.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig79546:449..964- (Macrocystis pyrifera P11B4 male)
ATGATCTTCGGGATCATCGAGATGAGCCTGATGTTCCGTGATCGGGTCGC
GCTCGATGGCGTCGGCCACGACGCCGCTCGGGCTGCGGCGATCAGCGGGA
ACGATCAGAACGCCGACCACCACGTGCTCGAGGTCATCGCGGACAGTGCG
TCGCCGATGGCCGATGACGCCATCACCATGATCGTCATCTTCCGAGCAGA
TGGACCGTCGGCTCCGGTGCCGCCAGCCTGCCTCACCGGCTCGCAGGACA
GCACCGACCAGTGCAACCGATACCTCCCGATGCAGTTCGACGAGACGCTG
GATTCCTTCGGCTGTGATCCGCTCAAGAATCTCGACCGGTTCTGGTGCCC
GAGCGAACGTGTCGTCACCCGTGACGTGTCCAGCGGCGGCCCACCCGACT
ACATCGGGGTGTACATCGAACTCGAACGCTCGATGATCACGGGGTTCTTC
GGTGACGACCAGACACTCACCTCGACCACGATCTTGCGGATCGAACCGAG
GGACCTGTGAATGATCTTCGGGATCATCGAGATGAGCCTGATGTTCCGTG
ATCGGGTCGCGCTCGATGGCGTCGGCCACGACGCCGCTCGGGCTGCGGCG
ATCAGCGGGAACGATCAGAACGCCGACCACCACGTGCTCGAGGTCATCGC
GGACAGTGCGTCGCCGATGGCCGATGACGCCATCACCATGATCGTCATCT
TCCGAGCAGATGGACCGTCGGCTCCGGTGCCGCCAGCCTGCCTCACCGGC
TCGCAGGACAGCACCGACCAGTGCAACCGATACCTCCCGATGCAGTTCGA
CGAGACGCTGGATTCCTTCGGCTGTGATCCGCTCAAGAATCTCGACCGGT
TCTGGTGCCCGAGCGAACGTGTCGTCACCCGTGACGTGTCCAGCGGCGGC
CCACCCGACTACATCGGGGTGTACATCGAACTCGAACGCTCGATGATCAC
GGGGTTCTTCGGTGACGACCAGACACTCACCTCGACCACGATCTTGCGGA
TCGAACCGAGGGACCTGTGA
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