mRNA_M-pyrifera_M_contig79504.18667.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79504.18667.1
Unique NamemRNA_M-pyrifera_M_contig79504.18667.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A1G2Z6I5_9BACT (Flagellin n=1 Tax=Planctomycetes bacterium RBG_13_63_9 TaxID=1801965 RepID=A0A1G2Z6I5_9BACT)

HSP 1 Score: 140 bits (352), Expect = 8.070e-38
Identity = 77/168 (45.83%), Postives = 116/168 (69.05%), Query Frame = 1
Query:    1 ETNAALEAIDRIASYTRYGETRLLDGSNPE-LTFALSGDPSNTATVELPQVSTATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVANNRTSLVQSL 501
            ET+AALEAI+RI   T YG+ +LLDGS  + L+FA S + + T+T+ELP++ST  LGG  GALS+L++GG+ +LV G+L  A  I+D+A  ++L ARA  GAFEK+T+DS +R++      ++ +L Q+ D + AEESS  +RAQ LA+ +  ++ +A    SL+  L
Sbjct:  115 ETDAALEAINRIGRMTFYGDQKLLDGSAEDGLSFAFSPEVATTSTLELPEISTTALGGSSGALSDLASGGARSLVSGNLEEAMEIVDSAGSQVLAARAEAGAFEKYTVDSAARMLGEMEVQISSALSQVADTDAAEESSRFIRAQTLARVATTSVMLAGQNRSLIGHL 282          
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A3E0NBX6_9BACT (Flagellin_N domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0NBX6_9BACT)

HSP 1 Score: 115 bits (287), Expect = 3.690e-28
Identity = 63/163 (38.65%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 ETNAALEAIDRIASYTRYGETRLLDGSNPELTFALSGDPSNTATVELPQVSTATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVANNRTSL 489
            E +AA+EAI+RI S T+ G  RLLDGS+  LTFA S D +NT ++ LP +S A LG   G LS+L++ G  +L  G+     S+L++AR  +  AR  +G+FE+ TLD++   + +  + L+G+L  + D ++A E++N +R +++ ++++A +Q+A  R  L
Sbjct:  116 EVDAAVEAINRIGSNTQLGGQRLLDGSSRSLTFAFSPDLANTVSLSLPTISAAQLGNSDGTLSQLTSSGLLSLRRGNAGLTQSVLNSARSTVNKARGDIGSFERATLDASRNTLGSLRQQLSGALSMLYDADLALETANRVRFELIQRAAIATVQIAGERHRL 278          
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A2G2KQQ5_9BACT (Flagellin n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2KQQ5_9BACT)

HSP 1 Score: 110 bits (275), Expect = 2.010e-26
Identity = 65/157 (41.40%), Postives = 95/157 (60.51%), Query Frame = 1
Query:    1 ETNAALEAIDRIASYTRYGETRLLDGSNPELTFALSGDPSNTATVELPQVSTATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVA 471
            E +AA EAI+RI SYT++   +LLDG + ++    S +PS+ A + LP V  + LG E G L++L  GG  +L  G L  A  ++ A   +I  ARA LGAF+K+T+DST  V+    ENL+ +   IID + A E+S L R  ILA+ S++  + A
Sbjct:  112 EIDAATEAINRIGSYTQFAGRKLLDGQDVQINT--STNPSDLAAITLPTVRASALGNETGTLADLRTGGKLDLSSGTLVDAFDVVSAVEKQIAFARAELGAFDKYTVDSTQNVLQAEFENLSAARSGIIDTDYASETSALARGVILAEISVSIFKSA 266          
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A2E8D2F9_9PLAN (Flagellin n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D2F9_9PLAN)

HSP 1 Score: 100 bits (249), Expect = 1.350e-22
Identity = 65/173 (37.57%), Postives = 108/173 (62.43%), Query Frame = 1
Query:    1 ETNAALEAIDRIASYTRYGETRLLDGSNPELTFALSGDPSNTATVELPQVSTATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVANN----RTSLVQSLFY 507
            E +AA++A+DRI   T +   R+ DG + E+   +  +PS+ AT+ +P++ +  LG + GAL++L   GSA  +D D   A +I+  AR ++L ARA LGAFE+ ++D+TS++ D    NL  +L  I D +VA +SSNL+R+ IL  +++A  ++A      + SL+  LF+
Sbjct:  115 EIDAAVDALDRIGVSTHFASERVFDGQSREV--LVGPNPSDQATLNVPELRSGALGSDQGALADLR--GSA--ID-DAETAVNIVQGARSQVLNARAELGAFERNSIDATSKLFDDAAVNLNATLSAITDTDVALDSSNLVRSMILTDTAVATARLAAGTYKAQASLLDELFH 280          
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A2E5DY81_9BACT (Flagellin n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E5DY81_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 8.430e-18
Identity = 51/128 (39.84%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  118 SNTATVELPQVSTATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVANNRTSLVQSL 501
            S+ AT+ +  +ST ++GG  G L E+ +GGSA + DGDL +A  I+DAA +E+   +  LG+F +FTL+S+   +  T+E +T +   I D ++A E++ L R QIL+QS++ AL +AN++   + SL
Sbjct:  364 SDLATLGIRSMSTGSIGGIDGVLDEIRSGGSAAIADGDLLKAERIVDAALEEVASIQGRLGSFMRFTLESSRNTLGETLEQVTAAESSIRDADLAWETAALARHQILSQSAMQALSLANSQPMQILSL 491          
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A7G9NZ54_9BACT (Flagellin n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NZ54_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 3.520e-16
Identity = 57/167 (34.13%), Postives = 93/167 (55.69%), Query Frame = 1
Query:    4 TNAALEAIDRIASYTRYGETRLLDGSNPELTFALSGDPSNTATVELPQVSTATLGGEV-GALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVANNRTSLVQSL 501
            T A  + ++   S+T       + G   +     S + S   +  +  V  + LG  V G L+ + +GGS +LV+G  + A+ I+DA+  ++ V R  LG+FE+ TL++  R ++T++ENLT S  +I D + AEE++NL RAQ+L       LQ+ANN +S V  L
Sbjct:  328 TEAFSQVLNTAKSFT-------VTGGGAKFQLGPSVETSQQVSFGIQSVHASRLGNSVVGFLNSIVSGGSNSLVNGKASEASDIIDASISQVAVFRGRLGSFERNTLETNVRSLETSLENLTASESRIRDADFAEETANLTRAQVLNSVGTTVLQLANNASSNVLQL 487          
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A2D5B977_9BACT (Flagellin n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5B977_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 1.680e-15
Identity = 48/137 (35.04%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   97 FALSGDPSN--TATVELPQVSTATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVANNRTSLVQSL 501
            F    DP +   +++ +   +T +LGG  G L+ L A   ANL+DGD   A  I+  A + + ++RA +GAF+++T+DS+ R +  ++EN   +  QI + +VA+E++ L +AQI+ Q+++ AL VAN +++ V +L
Sbjct:  359 FQFDADPQSDLVSSLGIESATTGSLGGGAGTLASLRADNGANLIDGDTDLAERIISEAIESVTLSRARIGAFQRYTIDSSVRGLLVSMENTIAAESQIRNADVAKETAALAQAQIIQQAAMYALGVANTQSATVLAL 495          
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A293NFF6_9BACT (Flagellin n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A293NFF6_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 2.300e-15
Identity = 47/137 (34.31%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   97 FALSGDPSN--TATVELPQVSTATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVANNRTSLVQSL 501
            F    DP +   +++ +  V+T +LGG  G L+ L +  SAN+ DGD   A  I+  A D + +ARA +GAF+++++DS+ R +   +EN T +   + D ++A E+++L +AQI+  +++ AL VAN + + V +L
Sbjct:  359 FQFDSDPQSDLVSSLGIESVTTGSLGGASGTLASLRSANSANIFDGDTELAERIVSEAIDSVTMARARIGAFQRYSIDSSMRSLLIAMENTTSAESXVRDADIARETASLAQAQIIQXAAMYALGVANTQPATVLAL 495          
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A2E5EEC4_9BACT (Flagellin n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E5EEC4_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 4.250e-15
Identity = 47/128 (36.72%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  118 SNTATVELPQVSTATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVANNRTSLVQSL 501
            S  +++ +  ++T ++GG  GALSEL  GGSA +VDGD  +A  I++ +  E+   +  LG+F ++TL+S    + TT+E +  +   I D ++A E+++L R Q+L+QS++ AL +AN+    V SL
Sbjct:  363 SGLSSLGIRSLTTGSIGGFDGALSELRTGGSAAIVDGDTLKAQRIINESVQEVSNIQGRLGSFMRYTLESARDTLGTTLEQIAAADSSIRDADLAWETASLARTQLLSQSAMQALSIANSHPMQVLSL 490          
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Match: A0A2E0Y2H3_9BACT (Flagellin n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E0Y2H3_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 1.080e-14
Identity = 47/134 (35.07%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  100 ALSGDPSNTATVELPQVSTATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLGAFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSSLAALQVANNRTSLVQSL 501
            A   + S  AT+ +  ++T ++GG  G LS++  GG A+++DG+L +A  I++ A D++   R  LG+F ++TL+S    +D T+E +  +   I D ++A E++ L R QIL+QS+L AL +AN+    + +L
Sbjct:  357 AAGANRSELATLGIRSMTTGSIGGFDGMLSKIRTGGEASVLDGNLLQAQRIVEQAVDDVTKTRGRLGSFMRYTLESARNNLDATLEQVAAADTAIRDADLAWETAALARTQILSQSALQALSMANSHPMQILNL 490          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79504.18667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1G2Z6I5_9BACT8.070e-3845.83Flagellin n=1 Tax=Planctomycetes bacterium RBG_13_... [more]
A0A3E0NBX6_9BACT3.690e-2838.65Flagellin_N domain-containing protein n=1 Tax=Plan... [more]
A0A2G2KQQ5_9BACT2.010e-2641.40Flagellin n=1 Tax=Blastopirellula sp. TaxID=202482... [more]
A0A2E8D2F9_9PLAN1.350e-2237.57Flagellin n=1 Tax=Planctomycetaceae bacterium TaxI... [more]
A0A2E5DY81_9BACT8.430e-1839.84Flagellin n=1 Tax=Phycisphaerae bacterium TaxID=20... [more]
A0A7G9NZ54_9BACT3.520e-1634.13Flagellin n=1 Tax=Planctomycetales bacterium zrk34... [more]
A0A2D5B977_9BACT1.680e-1535.04Flagellin n=1 Tax=Phycisphaerae bacterium TaxID=20... [more]
A0A293NFF6_9BACT2.300e-1534.31Flagellin n=2 Tax=Phycisphaerae TaxID=666505 RepID... [more]
A0A2E5EEC4_9BACT4.250e-1536.72Flagellin n=1 Tax=Phycisphaerae bacterium TaxID=20... [more]
A0A2E0Y2H3_9BACT1.080e-1435.07Flagellin n=1 Tax=Phycisphaerae bacterium TaxID=20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79504contigM-pyrifera_M_contig79504:2..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.5
Seed ortholog evalue8.4e-13
Seed eggNOG ortholog1142394.PSMK_01520
Preferred nameflaC
KEGG koko:K02406
KEGG Pathwayko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
EggNOG OGs2IX6G@203682,COG1344@1,COG1344@2
COG Functional cat.N
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035
Exons1
Model size510
Cds size510
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.6939647-CDS-M-pyrifera_M_contig79504:1..5111622816698.6939647-CDS-M-pyrifera_M_contig79504:1..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79504 2..511 +
1692278126.4661145-CDS-M-pyrifera_M_contig79504:1..5111692278126.4661145-CDS-M-pyrifera_M_contig79504:1..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79504 2..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79504.18667.1prot_M-pyrifera_M_contig79504.18667.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79504 2..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79504.18667.1

>prot_M-pyrifera_M_contig79504.18667.1 ID=prot_M-pyrifera_M_contig79504.18667.1|Name=mRNA_M-pyrifera_M_contig79504.18667.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
ETNAALEAIDRIASYTRYGETRLLDGSNPELTFALSGDPSNTATVELPQV
STATLGGEVGALSELSAGGSANLVDGDLARATSILDAARDEILVARASLG
AFEKFTLDSTSRVIDTTIENLTGSLGQIIDVNVAEESSNLLRAQILAQSS
LAALQVANNRTSLVQSLFY*
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mRNA from alignment at M-pyrifera_M_contig79504:2..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79504.18667.1 ID=mRNA_M-pyrifera_M_contig79504.18667.1|Name=mRNA_M-pyrifera_M_contig79504.18667.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig79504:2..511+ (Macrocystis pyrifera P11B4 male)
GAGACAAATGCCGCACTCGAGGCCATTGACCGGATCGCCAGTTACACCCG TTACGGTGAGACCAGGCTCCTCGATGGGAGCAATCCCGAATTGACGTTTG CCCTCTCGGGCGACCCATCGAACACCGCAACCGTCGAGCTTCCCCAAGTC AGTACGGCCACGTTGGGCGGCGAAGTCGGTGCACTCAGTGAGTTATCCGC AGGCGGTTCGGCGAACCTGGTCGACGGCGACCTGGCACGGGCGACATCCA TTTTGGATGCGGCCCGTGACGAAATTCTGGTGGCACGGGCCAGTCTCGGA GCATTCGAGAAGTTCACACTCGATTCTACGTCACGCGTGATCGACACGAC CATCGAGAATCTGACGGGCTCGCTCGGCCAGATCATCGACGTCAACGTCG CCGAGGAGTCTTCGAATCTCCTTCGGGCACAAATCCTGGCTCAAAGCTCT CTCGCCGCATTGCAAGTCGCCAACAATCGAACAAGCCTGGTCCAAAGCTT GTTCTATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79504:2..511+

>mRNA_M-pyrifera_M_contig79504.18667.1 ID=mRNA_M-pyrifera_M_contig79504.18667.1|Name=mRNA_M-pyrifera_M_contig79504.18667.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig79504:2..511+ (Macrocystis pyrifera P11B4 male)
GAGACAAATGCCGCACTCGAGGCCATTGACCGGATCGCCAGTTACACCCG
TTACGGTGAGACCAGGCTCCTCGATGGGAGCAATCCCGAATTGACGTTTG
CCCTCTCGGGCGACCCATCGAACACCGCAACCGTCGAGCTTCCCCAAGTC
AGTACGGCCACGTTGGGCGGCGAAGTCGGTGCACTCAGTGAGTTATCCGC
AGGCGGTTCGGCGAACCTGGTCGACGGCGACCTGGCACGGGCGACATCCA
TTTTGGATGCGGCCCGTGACGAAATTCTGGTGGCACGGGCCAGTCTCGGA
GCATTCGAGAAGTTCACACTCGATTCTACGTCACGCGTGATCGACACGAC
CATCGAGAATCTGACGGGCTCGCTCGGCCAGATCATCGACGTCAACGTCG
CCGAGGAGTCTTCGAATCTCCTTCGGGCACAAATCCTGGCTCAAAGCTCT
CTCGCCGCATTGCAAGTCGCCAACAATCGAACAAGCCTGGTCCAAAGCTT
GTTCTATTAAGAGACAAATGCCGCACTCGAGGCCATTGACCGGATCGCCA
GTTACACCCGTTACGGTGAGACCAGGCTCCTCGATGGGAGCAATCCCGAA
TTGACGTTTGCCCTCTCGGGCGACCCATCGAACACCGCAACCGTCGAGCT
TCCCCAAGTCAGTACGGCCACGTTGGGCGGCGAAGTCGGTGCACTCAGTG
AGTTATCCGCAGGCGGTTCGGCGAACCTGGTCGACGGCGACCTGGCACGG
GCGACATCCATTTTGGATGCGGCCCGTGACGAAATTCTGGTGGCACGGGC
CAGTCTCGGAGCATTCGAGAAGTTCACACTCGATTCTACGTCACGCGTGA
TCGACACGACCATCGAGAATCTGACGGGCTCGCTCGGCCAGATCATCGAC
GTCAACGTCGCCGAGGAGTCTTCGAATCTCCTTCGGGCACAAATCCTGGC
TCAAAGCTCTCTCGCCGCATTGCAAGTCGCCAACAATCGAACAAGCCTGG
TCCAAAGCTTGTTCTATTAA
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