mRNA_M-pyrifera_M_contig79487.18658.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79487.18658.1
Unique NamemRNA_M-pyrifera_M_contig79487.18658.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: A0A8B8ENJ1_CRAVI (von Willebrand factor A domain-containing protein 8-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8ENJ1_CRAVI)

HSP 1 Score: 62.0 bits (149), Expect = 6.540e-10
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIFANSVLRER 147
            Y +F+ SL+D+A Q+T+QLP G  FVCLDT+ LP I +QIF +++L  R
Sbjct: 1842 YVVFIGSLEDQASQLTKQLPAGHAFVCLDTNKLPQILQQIFTSTMLSGR 1890
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: A0A8J5DTU3_9DIPT (VWFA domain-containing protein n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5DTU3_9DIPT)

HSP 1 Score: 60.5 bits (145), Expect = 2.280e-9
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIFANSVLRE 144
            Y+IF+ SL +EA+ IT+ +P G+ F+C+D   LP I KQIFA+SVL +
Sbjct: 1356 YTIFIGSLDNEAEIITKSMPAGRSFICMDLKELPQILKQIFASSVLHQ 1403
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: A0A8J1UAL0_OWEFU (Ofus.G121125 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UAL0_OWEFU)

HSP 1 Score: 60.5 bits (145), Expect = 2.290e-9
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIFANSVLRER 147
            ++IF+ SL ++AQ +T+QLP GKGFVCLDT  +P I +QIF +++L  R
Sbjct: 1838 FAIFIGSLGNQAQVLTKQLPQGKGFVCLDTKDIPQILQQIFTSTMLSTR 1886
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: W2PUI3_PHYPN (VWFA domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2PUI3_PHYPN)

HSP 1 Score: 60.1 bits (144), Expect = 3.130e-9
Identity = 25/45 (55.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIFANSV 135
            +++F+AS  DEA++I R+LP G+G VCLDTS LP +FKQIF +++
Sbjct: 1876 HALFIASFADEAERIRRELPAGRGHVCLDTSDLPRMFKQIFTSAL 1920
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: H3GNP7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNP7_PHYRM)

HSP 1 Score: 59.7 bits (143), Expect = 4.190e-9
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIFANS 132
            +++F+AS  DEA++I R+LP G+G VCLDTS LP +FKQIF ++
Sbjct:  345 HALFIASFADEAERIRRELPAGRGHVCLDTSDLPRMFKQIFTSA 388
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: A0A329SLD3_9STRA (von Willebrand factor A domain-containing protein 8 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SLD3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.270e-9
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIFANS 132
            +++F+AS  DEA++I R+LP G+G VCLDTS LP +FKQIF ++
Sbjct: 1881 HALFIASFADEAERIRRELPAGRGHVCLDTSDLPRMFKQIFTSA 1924
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: A0A662Y7R5_9STRA (VWFA domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7R5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.970e-9
Identity = 25/45 (55.56%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIFANSV 135
            +++F+AS  DEA++I R LPVG+G VCLDT+ LP +FKQIF  ++
Sbjct:  914 HALFIASFADEAERIRRDLPVGRGHVCLDTAELPRMFKQIFTAAL 958
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: A0A6A3N6K6_9STRA (von Willebrand factor A domain-containing protein 8 n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N6K6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.090e-8
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIF 123
            +++F+AS  DEA++I R+LP G+G VCLDTS LP +FKQIF
Sbjct:  963 HALFIASFADEAERIRRELPAGRGHVCLDTSDLPRMFKQIF 1003
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: A0A6A3MVZ7_9STRA (von Willebrand factor A domain-containing protein 8 n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MVZ7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.090e-8
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIF 123
            +++F+AS  DEA++I R+LP G+G VCLDTS LP +FKQIF
Sbjct: 1264 HALFIASFADEAERIRRELPAGRGHVCLDTSDLPRMFKQIF 1304
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BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Match: G4YPG9_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YPG9_PHYSP)

HSP 1 Score: 58.5 bits (140), Expect = 1.090e-8
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIF 123
            +++F+AS  DEA++I R+LP G+G VCLDTS LP +FKQIF
Sbjct: 1808 HALFIASFADEAERIRRELPAGRGHVCLDTSDLPRMFKQIF 1848
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79487.18658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B8ENJ1_CRAVI6.540e-1053.06von Willebrand factor A domain-containing protein ... [more]
A0A8J5DTU3_9DIPT2.280e-952.08VWFA domain-containing protein n=2 Tax=Bradysia Ta... [more]
A0A8J1UAL0_OWEFU2.290e-953.06Ofus.G121125 protein n=1 Tax=Owenia fusiformis Tax... [more]
W2PUI3_PHYPN3.130e-955.56VWFA domain-containing protein n=19 Tax=Phytophtho... [more]
H3GNP7_PHYRM4.190e-956.82Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A329SLD3_9STRA4.270e-956.82von Willebrand factor A domain-containing protein ... [more]
A0A662Y7R5_9STRA7.970e-955.56VWFA domain-containing protein n=2 Tax=Nothophytop... [more]
A0A6A3N6K6_9STRA1.090e-860.98von Willebrand factor A domain-containing protein ... [more]
A0A6A3MVZ7_9STRA1.090e-860.98von Willebrand factor A domain-containing protein ... [more]
G4YPG9_PHYSP1.090e-860.98Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79487contigM-pyrifera_M_contig79487:813..965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog4792.ETI40093
Preferred nameVWA8
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATPase activity
EggNOG OGs3QD45@4776,COG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.368985-CDS-M-pyrifera_M_contig79487:812..9651622816698.368985-CDS-M-pyrifera_M_contig79487:812..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79487 813..965 -
1692278126.3108714-CDS-M-pyrifera_M_contig79487:812..9651692278126.3108714-CDS-M-pyrifera_M_contig79487:812..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79487 813..965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79487.18658.1prot_M-pyrifera_M_contig79487.18658.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79487 813..965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79487.18658.1

>prot_M-pyrifera_M_contig79487.18658.1 ID=prot_M-pyrifera_M_contig79487.18658.1|Name=mRNA_M-pyrifera_M_contig79487.18658.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
YSIFLASLQDEAQQITRQLPVGKGFVCLDTSALPSIFKQIFANSVLRERL
*
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mRNA from alignment at M-pyrifera_M_contig79487:813..965-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79487.18658.1 ID=mRNA_M-pyrifera_M_contig79487.18658.1|Name=mRNA_M-pyrifera_M_contig79487.18658.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig79487:813..965- (Macrocystis pyrifera P11B4 male)
TACAGTATCTTCCTCGCCTCCCTGCAAGACGAGGCACAGCAGATCACCCG
CCAGCTACCCGTGGGCAAGGGCTTCGTCTGCCTCGACACCAGCGCACTTC
CTTCGATCTTCAAGCAGATCTTTGCCAACAGCGTTCTCCGGGAGCGCCTG
TGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79487:813..965-

>mRNA_M-pyrifera_M_contig79487.18658.1 ID=mRNA_M-pyrifera_M_contig79487.18658.1|Name=mRNA_M-pyrifera_M_contig79487.18658.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig79487:813..965- (Macrocystis pyrifera P11B4 male)
TACAGTATCTTCCTCGCCTCCCTGCAAGACGAGGCACAGCAGATCACCCG
CCAGCTACCCGTGGGCAAGGGCTTCGTCTGCCTCGACACCAGCGCACTTC
CTTCGATCTTCAAGCAGATCTTTGCCAACAGCGTTCTCCGGGAGCGCCTG
TGATACAGTATCTTCCTCGCCTCCCTGCAAGACGAGGCACAGCAGATCAC
CCGCCAGCTACCCGTGGGCAAGGGCTTCGTCTGCCTCGACACCAGCGCAC
TTCCTTCGATCTTCAAGCAGATCTTTGCCAACAGCGTTCTCCGGGAGCGC
CTGTGA
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