mRNA_M-pyrifera_M_contig79374.18635.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79374.18635.1
Unique NamemRNA_M-pyrifera_M_contig79374.18635.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79374.18635.1 vs. uniprot
Match: A0A138ZWJ4_GONPJ (HCP-like protein (Fragment) n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZWJ4_GONPJ)

HSP 1 Score: 56.6 bits (135), Expect = 3.260e-7
Identity = 41/136 (30.15%), Postives = 67/136 (49.26%), Query Frame = 1 
Query:    1 FLRAAQQGDVYSNAYLGDLYDYERGLGEDIPAATKWYRKAADKNNY---------YGYLGLGFIEYYKHSNPKQAVVWFEKAARLAKQEVDPDAWYMLGLIYCLKEKNFVKARAYYERAAIEGHHTDACYMLAELY 381
            +  AA QG V +   LG +  +  G+  D   A KW++KAA++ N+            LGLG  E     N +QA+ +    A    Q+ + DA + +G++ C  + NF  A+++Y+ A  +GH   A   L +LY
Sbjct:    2 YCHAADQGHVVAQTRLGFMLMHRYGVKWDYKEAVKWFKKAAEEQNFPVAKVLLAECYLLGLGVEE-----NLEQAIRYLSDVA----QDGNADAQFNMGMV-CEHQNNFDGAKSWYKEAVKQGH-AGAMANLGDLY 126
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79374.18635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A138ZWJ4_GONPJ3.260e-730.15HCP-like protein (Fragment) n=1 Tax=Gonapodya prol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79374contigM-pyrifera_M_contig79374:15..425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog42099.EPrPV00000014077
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MEYQ@121069,COG0790@1,KOG1550@2759
COG Functional cat.MOT
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.1442327-CDS-M-pyrifera_M_contig79374:14..4251622816697.1442327-CDS-M-pyrifera_M_contig79374:14..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79374 15..425 +
1692278125.5402849-CDS-M-pyrifera_M_contig79374:14..4251692278125.5402849-CDS-M-pyrifera_M_contig79374:14..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79374 15..425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79374.18635.1prot_M-pyrifera_M_contig79374.18635.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79374 15..425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79374.18635.1

>prot_M-pyrifera_M_contig79374.18635.1 ID=prot_M-pyrifera_M_contig79374.18635.1|Name=mRNA_M-pyrifera_M_contig79374.18635.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
FLRAAQQGDVYSNAYLGDLYDYERGLGEDIPAATKWYRKAADKNNYYGYL
GLGFIEYYKHSNPKQAVVWFEKAARLAKQEVDPDAWYMLGLIYCLKEKNF
VKARAYYERAAIEGHHTDACYMLAELYSQEGCERSEY
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mRNA from alignment at M-pyrifera_M_contig79374:15..425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79374.18635.1 ID=mRNA_M-pyrifera_M_contig79374.18635.1|Name=mRNA_M-pyrifera_M_contig79374.18635.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig79374:15..425+ (Macrocystis pyrifera P11B4 male)
TTCCTCCGTGCGGCACAGCAGGGAGACGTGTACTCGAACGCCTATCTGGG
TGACCTCTACGACTACGAGCGCGGCCTGGGCGAGGACATTCCGGCCGCAA
CGAAGTGGTACAGGAAGGCAGCAGACAAGAACAACTACTACGGCTACCTG
GGCCTGGGCTTCATTGAGTACTACAAGCACAGCAACCCTAAGCAGGCGGT
GGTGTGGTTCGAGAAGGCGGCACGGCTGGCCAAGCAGGAGGTCGACCCAG
ACGCCTGGTACATGCTGGGCCTCATCTACTGCCTCAAGGAGAAGAACTTC
GTGAAGGCCAGAGCCTACTACGAGAGAGCGGCCATCGAGGGTCATCACAC
AGACGCCTGCTACATGCTGGCAGAGCTCTACTCGCAGGAGGGATGCGAGA
GGTCCGAGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79374:15..425+

>mRNA_M-pyrifera_M_contig79374.18635.1 ID=mRNA_M-pyrifera_M_contig79374.18635.1|Name=mRNA_M-pyrifera_M_contig79374.18635.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig79374:15..425+ (Macrocystis pyrifera P11B4 male)
TTCCTCCGTGCGGCACAGCAGGGAGACGTGTACTCGAACGCCTATCTGGG
TGACCTCTACGACTACGAGCGCGGCCTGGGCGAGGACATTCCGGCCGCAA
CGAAGTGGTACAGGAAGGCAGCAGACAAGAACAACTACTACGGCTACCTG
GGCCTGGGCTTCATTGAGTACTACAAGCACAGCAACCCTAAGCAGGCGGT
GGTGTGGTTCGAGAAGGCGGCACGGCTGGCCAAGCAGGAGGTCGACCCAG
ACGCCTGGTACATGCTGGGCCTCATCTACTGCCTCAAGGAGAAGAACTTC
GTGAAGGCCAGAGCCTACTACGAGAGAGCGGCCATCGAGGGTCATCACAC
AGACGCCTGCTACATGCTGGCAGAGCTCTACTCGCAGGAGGGATGCGAGA
GGTCCGAGTACTTCCTCCGTGCGGCACAGCAGGGAGACGTGTACTCGAAC
GCCTATCTGGGTGACCTCTACGACTACGAGCGCGGCCTGGGCGAGGACAT
TCCGGCCGCAACGAAGTGGTACAGGAAGGCAGCAGACAAGAACAACTACT
ACGGCTACCTGGGCCTGGGCTTCATTGAGTACTACAAGCACAGCAACCCT
AAGCAGGCGGTGGTGTGGTTCGAGAAGGCGGCACGGCTGGCCAAGCAGGA
GGTCGACCCAGACGCCTGGTACATGCTGGGCCTCATCTACTGCCTCAAGG
AGAAGAACTTCGTGAAGGCCAGAGCCTACTACGAGAGAGCGGCCATCGAG
GGTCATCACACAGACGCCTGCTACATGCTGGCAGAGCTCTACTCGCAGGA
GGGATGCGAGAGGTCCGAGTAC
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