mRNA_M-pyrifera_M_contig79313.18623.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79313.18623.1
Unique NamemRNA_M-pyrifera_M_contig79313.18623.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: D8LEB7_ECTSI (IRK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB7_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.850e-53
Identity = 90/111 (81.08%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISAHMGCHLELASIREAFLFSLETMSTVGYGTSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            YLS+VL+FA+VY  IS  +GC+L+L SIRE FLFSLETM+TVGYGT DYLF  CWIMLP+LSLQAC+GLLIDAFLIGILFARLSRPQTRA+TVVFTK+AVIRRVRGE+YFM
Sbjct:  170 YLSLVLLFAIVYTTISLTLGCNLQLTSIREGFLFSLETMTTVGYGTHDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFM 280          
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: A0A6H5K8M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M2_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.730e-49
Identity = 88/111 (79.28%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISAHMGCHLELASIREAFLFSLETMSTVGYGTSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            YLS+V +FA+VY  IS  +GC+L+L SIRE FLFSLETM+TVGYGT DYLF  CW+MLP+LSLQAC+GLLIDAFLIGILFARLSRPQTRA+TVVFTK+AVIRRVRGE+YFM
Sbjct:  133 YLSLVFLFAIVYTTISHTLGCNLQLTSIREGFLFSLETMTTVGYGTHDYLFGSCWVMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFM 243          
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: A0A836CL18_9STRA (Inward rectifier potassium channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL18_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.570e-38
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISAHMGCHLELASIREAFLFSLETMSTVGYGTSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            YL +V  FAL+Y++IS   GC++ +   REA+ FSLETM+TVGYGT D  F  CW ++ +++ QAC GLLIDA LIG+LFARL+RPQTRASTVVF+  AV+RR+RGE YFM
Sbjct:   57 YLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFM 167          
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: A0A835YU47_9STRA (Inward rectifier potassium channel-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU47_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.210e-37
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISAHMGCHLELASIREAFLFSLETMSTVGYGTSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            YL++V +FA +Y+ I+   GC+L +   REA+ FSLETM+TVG+GT D  F  CW ++ +++ QAC GLLIDA LIG+LFARL RPQTRASTVVF+  AV+RR+RGE YFM
Sbjct:   82 YLAVVTVFAALYLAIARFDGCNLGIVDYREAYYFSLETMTTVGFGTQDVFFGRCWSVMVIITAQACSGLLIDALLIGLLFARLGRPQTRASTVVFSDKAVLRRIRGEYYFM 192          
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: A0A482S2N8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2N8_9ARCH)

HSP 1 Score: 105 bits (261), Expect = 2.350e-25
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISAHMGCHLELASIREAFLFSLETMSTVGYGTSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            Y++ V  FA +Y  I  +  C L+  +   AF FSLETM+T+GY T D  F  C I+  VL+LQ C+ L++D   IGI++ RL+RP +RAST++F+K+AVIRR+RG+ YFM
Sbjct:   91 YVATVAFFATLYYAIRLNYVCELDFETWLGAFDFSLETMATIGYTTKDLSFANCAIVTVVLTLQCCIRLIVDGSTIGIIYCRLARPHSRASTIIFSKNAVIRRIRGKLYFM 201          
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: A0A484DZB3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZB3_BRELC)

HSP 1 Score: 102 bits (255), Expect = 1.470e-23
Identity = 51/114 (44.74%), Postives = 82/114 (71.93%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISA-HMGCHLELASIREAFLFSLETMSTVGYG--TSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            Y  ++L+FAL Y+ +S  H  CH+ L+SI +A++FSLET+ T+GYG  T+D  + GC  M  +L+L++  G+++D+  IGI +AR +R   RA+T++F+  AVIR++RG+ YFM
Sbjct:   99 YFFVILLFALAYLNVSMRHPTCHVGLSSIIDAYIFSLETIMTIGYGAPTNDIFYGGCTSMATLLTLESFAGIILDSVCIGIFYARFARANQRANTIIFSNSAVIRKIRGQYYFM 212          
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: A0A421GNN7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GNN7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.340e-23
Identity = 53/114 (46.49%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISA-HMGCHLELASIREAFLFSLETMSTVGYG--TSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            Y  I+L FAL Y+ +S  H  CH+ L+SI EA++FSLET+ T+GYG  T+D  + GC  +  +L+L++  G+++D+  IGI +AR SR   RA+T++F+  AVIR++RG  YFM
Sbjct:   79 YFFIILFFALAYLDVSVRHPTCHVGLSSIIEAYIFSLETIMTIGYGAPTNDIFYGGCTTIATLLTLESFAGIILDSVCIGIFYARFSRANQRANTIMFSNSAVIRKIRGHYYFM 192          
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: A0A833SV26_PHYIN (Inward rectifier potassium channel transmembrane domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SV26_PHYIN)

HSP 1 Score: 99.8 bits (247), Expect = 6.530e-23
Identity = 51/114 (44.74%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISA-HMGCHLELASIREAFLFSLETMSTVGYG--TSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            Y  I+L FA+ Y+ +S  H  CH+ L+SI +A++FSLET+ T+GYG  T D  + GC  +  +L+L++  G+++D+  IGI +AR SR   RA+T++F+  AVIR++RG  YFM
Sbjct:   81 YFFIILFFAVAYLDVSVRHPTCHVGLSSIMDAYIFSLETIMTIGYGAPTDDIFYGGCTSIATLLTLESFSGIILDSVCIGIFYARFSRANQRANTIMFSNSAVIRKIRGHFYFM 194          
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: D0N402_PHYIT (Animal inward rectifier K channel (IRK-C) family protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=D0N402_PHYIT)

HSP 1 Score: 99.8 bits (247), Expect = 1.550e-22
Identity = 51/114 (44.74%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISA-HMGCHLELASIREAFLFSLETMSTVGYG--TSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            Y  I+L FA+ Y+ +S  H  CH+ L+SI +A++FSLET+ T+GYG  T D  + GC  +  +L+L++  G+++D+  IGI +AR SR   RA+T++F+  AVIR++RG  YFM
Sbjct:   71 YFFIILFFAVAYLDVSVRHPTCHVGLSSIMDAYIFSLETIMTIGYGAPTDDIFYGGCTSIATLLTLESFAGIILDSVCIGIFYARFSRANQRANTIMFSNSAVIRKIRGHFYFM 184          
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Match: H3GJH8_PHYRM (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=H3GJH8_PHYRM)

HSP 1 Score: 99.0 bits (245), Expect = 3.260e-22
Identity = 51/114 (44.74%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 YLSIVLIFALVYVMISA-HMGCHLELASIREAFLFSLETMSTVGYG--TSDYLFDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAVIRRVRGESYFM 333
            Y  I+  FAL Y+ +S  H  CH+ L+SI +A++FSLET+ T+GYG  T D  + GC  +  +L+L++  G+++D+  IGI +AR SR   RA+T++F+  AVIR++RG  YFM
Sbjct:   81 YFFIIFFFALAYLDVSVRHPTCHVGLSSIMDAYVFSLETIMTIGYGAPTDDIFYGGCTSIATLLTLESFAGIILDSVCIGIFYARFSRANQRANTIMFSNSAVIRKIRGHYYFM 194          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79313.18623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEB7_ECTSI1.850e-5381.08IRK domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8M2_9PHAE3.730e-4979.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CL18_9STRA2.570e-3861.26Inward rectifier potassium channel-domain-containi... [more]
A0A835YU47_9STRA4.210e-3759.46Inward rectifier potassium channel-domain-containi... [more]
A0A482S2N8_9ARCH2.350e-2548.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A484DZB3_BRELC1.470e-2344.74Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A421GNN7_9STRA2.340e-2346.49Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A833SV26_PHYIN6.530e-2344.74Inward rectifier potassium channel transmembrane d... [more]
D0N402_PHYIT1.550e-2244.74Animal inward rectifier K channel (IRK-C) family p... [more]
H3GJH8_PHYRM3.260e-2244.74Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79313contigM-pyrifera_M_contig79313:282..617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue1.1e-42
Seed eggNOG ortholog2880.D8LEB7
KEGG koko:K05005,ko:K05330
KEGG TC1.A.2.1.14,1.A.2.1.15,1.A.2.1.9
KEGG Pathwayko04725,ko04921,map04725,map04921
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.inward rectifier potassium channel activity
EggNOG OGsKOG3827@1,KOG3827@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.6023026-CDS-M-pyrifera_M_contig79313:281..6171622816696.6023026-CDS-M-pyrifera_M_contig79313:281..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79313 282..617 +
1692278125.2726216-CDS-M-pyrifera_M_contig79313:281..6171692278125.2726216-CDS-M-pyrifera_M_contig79313:281..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79313 282..617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79313.18623.1prot_M-pyrifera_M_contig79313.18623.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79313 282..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79313.18623.1

>prot_M-pyrifera_M_contig79313.18623.1 ID=prot_M-pyrifera_M_contig79313.18623.1|Name=mRNA_M-pyrifera_M_contig79313.18623.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
YLSIVLIFALVYVMISAHMGCHLELASIREAFLFSLETMSTVGYGTSDYL
FDGCWIMLPVLSLQACMGLLIDAFLIGILFARLSRPQTRASTVVFTKHAV
IRRVRGESYFM*
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mRNA from alignment at M-pyrifera_M_contig79313:282..617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79313.18623.1 ID=mRNA_M-pyrifera_M_contig79313.18623.1|Name=mRNA_M-pyrifera_M_contig79313.18623.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig79313:282..617+ (Macrocystis pyrifera P11B4 male)
TACCTGAGCATCGTCCTGATCTTCGCCTTGGTGTACGTGATGATATCGGC CCACATGGGCTGCCACCTGGAGCTGGCAAGCATCCGCGAGGCGTTCTTGT TTTCGCTGGAGACGATGTCGACCGTCGGCTACGGGACCAGCGACTACCTC TTCGACGGCTGCTGGATAATGCTGCCGGTGCTCAGCCTGCAGGCGTGCAT GGGGTTACTGATCGACGCGTTTCTGATCGGGATACTTTTCGCCAGGCTCA GCCGCCCGCAGACGCGGGCGAGCACGGTGGTGTTCACGAAGCACGCGGTG ATTCGTCGCGTGCGTGGCGAGTCCTACTTCATGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79313:282..617+

>mRNA_M-pyrifera_M_contig79313.18623.1 ID=mRNA_M-pyrifera_M_contig79313.18623.1|Name=mRNA_M-pyrifera_M_contig79313.18623.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig79313:282..617+ (Macrocystis pyrifera P11B4 male)
TACCTGAGCATCGTCCTGATCTTCGCCTTGGTGTACGTGATGATATCGGC
CCACATGGGCTGCCACCTGGAGCTGGCAAGCATCCGCGAGGCGTTCTTGT
TTTCGCTGGAGACGATGTCGACCGTCGGCTACGGGACCAGCGACTACCTC
TTCGACGGCTGCTGGATAATGCTGCCGGTGCTCAGCCTGCAGGCGTGCAT
GGGGTTACTGATCGACGCGTTTCTGATCGGGATACTTTTCGCCAGGCTCA
GCCGCCCGCAGACGCGGGCGAGCACGGTGGTGTTCACGAAGCACGCGGTG
ATTCGTCGCGTGCGTGGCGAGTCCTACTTCATGTGATACCTGAGCATCGT
CCTGATCTTCGCCTTGGTGTACGTGATGATATCGGCCCACATGGGCTGCC
ACCTGGAGCTGGCAAGCATCCGCGAGGCGTTCTTGTTTTCGCTGGAGACG
ATGTCGACCGTCGGCTACGGGACCAGCGACTACCTCTTCGACGGCTGCTG
GATAATGCTGCCGGTGCTCAGCCTGCAGGCGTGCATGGGGTTACTGATCG
ACGCGTTTCTGATCGGGATACTTTTCGCCAGGCTCAGCCGCCCGCAGACG
CGGGCGAGCACGGTGGTGTTCACGAAGCACGCGGTGATTCGTCGCGTGCG
TGGCGAGTCCTACTTCATGTGA
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