mRNA_M-pyrifera_M_contig7930.18619.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7930.18619.1
Unique NamemRNA_M-pyrifera_M_contig7930.18619.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: A0A7S3TS18_EMIHU (Hypothetical protein (Fragment) n=6 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TS18_EMIHU)

HSP 1 Score: 129 bits (323), Expect = 2.370e-36
Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 3
Query:   90 PNNTMRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            PN+ MRECI+IH+GQAG+QTGNACWEL+CLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG
Sbjct:   15 PNSVMRECITIHLGQAGVQTGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 75          
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: R7VRJ6_COLLI (Tubulin alpha chain n=1 Tax=Columba livia TaxID=8932 RepID=R7VRJ6_COLLI)

HSP 1 Score: 125 bits (315), Expect = 1.190e-35
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 3
Query:   45 LGIPTVLSPSISFSCPNNTMRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            L +P+ +        P  + RECISIH+GQAG+Q GNACWELYCLEHGIQPDGQMPSDKTIGGGDD+FNTFFSETG
Sbjct:   16 LALPSSMPARPGGGVPTGSARECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG 91          
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: A0A821VI49_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821VI49_9NEOB)

HSP 1 Score: 124 bits (310), Expect = 2.280e-35
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  102 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            MRECISIH GQAG+QTGNACWELYCLEHGIQPDGQMPSDKTIGGGDD+FNTFFSETG
Sbjct:    1 MRECISIHAGQAGVQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG 57          
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: A0A7R9VZ41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZ41_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.500e-35
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 3
Query:   90 PNNTMRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            P N MRE +SIHIGQAGIQ GNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG
Sbjct:   26 PTNNMREVLSIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 86          
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: A0A3B3SI82_9TELE (Tubulin alpha-3 chain-like n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SI82_9TELE)

HSP 1 Score: 126 bits (317), Expect = 2.750e-35
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 3
Query:   60 VLSPSISFSCPNNTMRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            +L    S    +NT RECISIH+GQAG+Q GNACWELYCLEHGIQPDGQMPSDKTIGGGDD+FNTFFSETG
Sbjct:   15 ILKGGASLCSQHNTGRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG 85          
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: Q41999_ARATH (Tubulin alpha-2 chain (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q41999_ARATH)

HSP 1 Score: 123 bits (309), Expect = 2.750e-35
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 3
Query:  102 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            MRECISIHIGQAGIQ GNACWELYCLEHGIQPDGQMP DKT+GGGDDAFNTFFSETG
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETG 57          
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: A0A1J6KH75_NICAT (Tubulin domain-containing protein n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6KH75_NICAT)

HSP 1 Score: 124 bits (310), Expect = 3.690e-35
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 3
Query:  102 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            MRECISIHIGQAGIQ GNACWELYCLEHGIQPDGQMP DKTIGGGDDAFNTFFSETG
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTIGGGDDAFNTFFSETG 57          
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: UPI00128F4B05 (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00128F4B05)

HSP 1 Score: 125 bits (313), Expect = 3.740e-35
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  102 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            MRECISIHIGQAGIQ GNACWELYCLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETG
Sbjct:   34 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETG 90          
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: A0A448XM44_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448XM44_9PLAT)

HSP 1 Score: 124 bits (310), Expect = 3.910e-35
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = 3
Query:   99 TMRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            T+RECISIH+GQAG+Q GNACWELYCLEHGIQPDGQMPSDKTIGGGDD+FNTFFSETG
Sbjct:    3 TLRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG 60          
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Match: Q1KSI0_PHAVU (Alpha-tubulin (Fragment) n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=Q1KSI0_PHAVU)

HSP 1 Score: 125 bits (313), Expect = 5.040e-35
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  102 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETG 272
            MRECISIHIGQAGIQ GNACWELYCLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETG
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETG 57          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7930.18619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3TS18_EMIHU2.370e-3690.16Hypothetical protein (Fragment) n=6 Tax=Emiliania ... [more]
R7VRJ6_COLLI1.190e-3572.37Tubulin alpha chain n=1 Tax=Columba livia TaxID=89... [more]
A0A821VI49_9NEOB2.280e-3594.74(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A7R9VZ41_9STRA2.500e-3591.80Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A3B3SI82_9TELE2.750e-3578.87Tubulin alpha-3 chain-like n=2 Tax=Paramormyrops k... [more]
Q41999_ARATH2.750e-3594.74Tubulin alpha-2 chain (Fragment) n=1 Tax=Arabidops... [more]
A0A1J6KH75_NICAT3.690e-3596.49Tubulin domain-containing protein n=1 Tax=Nicotian... [more]
UPI00128F4B053.740e-3596.49hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
A0A448XM44_9PLAT3.910e-3591.38Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
Q1KSI0_PHAVU5.040e-3596.49Alpha-tubulin (Fragment) n=1 Tax=Phaseolus vulgari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7930contigM-pyrifera_M_contig7930:2915..3648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.1825633-CDS-M-pyrifera_M_contig7930:2914..30461622816696.1825633-CDS-M-pyrifera_M_contig7930:2914..3046Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7930 2915..3046 -
1692278125.019788-CDS-M-pyrifera_M_contig7930:2914..30461692278125.019788-CDS-M-pyrifera_M_contig7930:2914..3046Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7930 2915..3046 -
1622816696.198248-CDS-M-pyrifera_M_contig7930:3498..36481622816696.198248-CDS-M-pyrifera_M_contig7930:3498..3648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7930 3499..3648 -
1692278125.0308034-CDS-M-pyrifera_M_contig7930:3498..36481692278125.0308034-CDS-M-pyrifera_M_contig7930:3498..3648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7930 3499..3648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7930.18619.1prot_M-pyrifera_M_contig7930.18619.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7930 2915..3648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7930.18619.1

>prot_M-pyrifera_M_contig7930.18619.1 ID=prot_M-pyrifera_M_contig7930.18619.1|Name=mRNA_M-pyrifera_M_contig7930.18619.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
PAVASRDDSPDNSPSSVSPQSSRHLSPFPAPITPCASASPSTLARPASRP
VTRAGSSTAWSTGSSPMARCPRTRPSVAVTMLSTLSSPRPVSA*
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mRNA from alignment at M-pyrifera_M_contig7930:2915..3648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7930.18619.1 ID=mRNA_M-pyrifera_M_contig7930.18619.1|Name=mRNA_M-pyrifera_M_contig7930.18619.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=734bp|location=Sequence derived from alignment at M-pyrifera_M_contig7930:2915..3648- (Macrocystis pyrifera P11B4 male)
CCTGCCGTCGCATCGCGTGACGACTCGCCCGATAACTCGCCAAGCTCGGT ATCCCCACAGTCCTCTCGCCATCTATCTCCTTTTCCTGCCCCAATAACAC CATGCGCGAGTGCATCTCCATCCACATTGGCCAGGCCGGCATCCAGACCG GTGAGCACTCCAAGACAGGCAAAAACTATTCAAAAATTGCACAGGCGAAC AGCAGAGAAGCAATAAAATAAAGGATGGGCCCGCTTGTGGATGGATCTAC TTCAGAGCGCTAGCGCAGAGCGAGGATGGGCGCAAACATACCCATAGGCA ACTGCCGTTTGGGCGAGCTTGCTAATTGCACCGTCGGCCACATACATAGC TGTAGGTGTATCCCTTCTCATGTTCATCTTGACTTTGCCTCTTGCCACCT CCTTGCAACTTGAAATCACAAGAAGTACCCGAATACCACAGTGTCCGAAA ATGTAAGGAGCTTTGTATTCTCTACTAGAATCCAAGCGGTCCTTACATTT CCGGACATGGTGGAGTGGTAAATGCCAACCGAAACGTTTCCAATTTTTTT CGGCTGCCTTCGGCTTTCGGCTTCGCTGTGTCTTCGCACAACTGCTGTCA AGGTAACGCGTGCTGGGAGCTCTACTGCTTGGAGCACGGGATCCAGCCCG ATGGCCAGATGCCCTCGGACAAGACCATCGGTGGCGGTGACGATGCTTTC AACACTTTCTTCTCCGAGACCGGTGAGTGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7930:2915..3648-

>mRNA_M-pyrifera_M_contig7930.18619.1 ID=mRNA_M-pyrifera_M_contig7930.18619.1|Name=mRNA_M-pyrifera_M_contig7930.18619.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig7930:2915..3648- (Macrocystis pyrifera P11B4 male)
CCTGCCGTCGCATCGCGTGACGACTCGCCCGATAACTCGCCAAGCTCGGT
ATCCCCACAGTCCTCTCGCCATCTATCTCCTTTTCCTGCCCCAATAACAC
CATGCGCGAGTGCATCTCCATCCACATTGGCCAGGCCGGCATCCAGACCG
CCTGCCGTCGCATCGCGTGACGACTCGCCCGATAACTCGCCAAGCTCGGT
ATCCCCACAGTCCTCTCGCCATCTATCTCCTTTTCCTGCCCCAATAACAC
CATGCGCGAGTGCATCTCCATCCACATTGGCCAGGCCGGCATCCAGACCG
GTAACGCGTGCTGGGAGCTCTACTGCTTGGAGCACGGGATCCAGCCCGAT
GGCCAGATGCCCTCGGACAAGACCATCGGTGGCGGTGACGATGCTTTCAA
CACTTTCTTCTCCGAGACCGGTGAGTGCCTGAGTAACGCGTGCTGGGAGC
TCTACTGCTTGGAGCACGGGATCCAGCCCGATGGCCAGATGCCCTCGGAC
AAGACCATCGGTGGCGGTGACGATGCTTTCAACACTTTCTTCTCCGAGAC
CGGTGAGTGCCTGA
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