mRNA_M-pyrifera_M_contig79266.18607.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79266.18607.1
Unique NamemRNA_M-pyrifera_M_contig79266.18607.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A3D1GQY3_9GAMM (HTH gntR-type domain-containing protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A3D1GQY3_9GAMM)

HSP 1 Score: 269 bits (687), Expect = 1.760e-90
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTSSEPSGQIAA 414
            GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTSSEPSGQIAA
Sbjct:   44 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTSSEPSGQIAA 181          
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A6C0U5F5_9GAMM (FadR family transcriptional regulator n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U5F5_9GAMM)

HSP 1 Score: 133 bits (334), Expect = 4.000e-36
Identity = 66/129 (51.16%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTS 387
             VSR+V REAFK L+A+ II++  GRRARV + DG+ +A    HG+R  Q ++QQ+WD RR+IE+RAV LAC+HR+E+ A  L  LA  M++  G++   T  DIEFH +IA+ +RNPL+ V++SS TS
Sbjct:   49 NVSRTVVREAFKALAAMNIIEVSSGRRARVHAFDGSVMALTLSHGLRTQQVTVQQIWDIRRSIEMRAVALACMHRSERTARRLEELAGLMRETHGDIATMTEHDIEFHLTIAEATRNPLYPVLISSLTS 177          
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A2E7GML6_9ALTE (GntR family transcriptional regulator n=3 Tax=Alteromonadaceae TaxID=72275 RepID=A0A2E7GML6_9ALTE)

HSP 1 Score: 128 bits (321), Expect = 3.590e-34
Identity = 63/129 (48.84%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTS 387
            GVSR+V REAFK+L+A+ II++G GRRARV  ++G+ +A      V   Q S QQVWDARR +E R+VELA +HRT+++AD L+ L   M+    +    T+ D+ FH++IA  SRNPL+ +++SS TS
Sbjct:   49 GVSRTVVREAFKVLAAMHIIEVGAGRRARVRKMEGSVIALMMSQAVHTEQMSTQQVWDARRTVEARSVELAAIHRTQQDADKLLQLVNTMRDSEDDPILMTQTDLAFHSTIAQASRNPLYPILVSSLTS 177          
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: UPI001BDC9540 (FadR family transcriptional regulator n=1 Tax=Denitromonas sp. (strain IR12) TaxID=2795389 RepID=UPI001BDC9540)

HSP 1 Score: 125 bits (315), Expect = 3.650e-33
Identity = 66/129 (51.16%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTS 387
            GVSR+V REAFK LSA++II++  GRRARVG  DG+ +A    H +R  Q S QQ+WDARRA+E R V LA   R++ EA HL++L +QM+    ++   T  DI FH +IA+ +RNPLF V+++S TS
Sbjct:   59 GVSRTVIREAFKSLSAIRIIEMRAGRRARVGGFDGSVIALSLTHALRTEQISPQQMWDARRAVERRTVALAASRRSDAEAAHLLALVEQMRDARHDLARMTEHDIAFHVAIANATRNPLFPVLVASLTS 187          
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A6N6L9U9_9PROT (FadR family transcriptional regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6N6L9U9_9PROT)

HSP 1 Score: 122 bits (305), Expect = 9.930e-32
Identity = 63/129 (48.84%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCTS 387
            GVSR+V REAFK L+A++II++  GRRARVG  D + +A    H +R  Q +  Q+WDARRA+E+R+V LA + RT+ EA  L+    QM+    ++   T +DI FH +IAD SRNPLFSV++ S +S
Sbjct:   53 GVSRTVVREAFKSLAAMRIIEMHAGRRARVGGFDASVMALSLTHALRTEQINAPQMWDARRAVEMRSVALAAMRRTDAEAAALLEQVAQMRDCVDDLARMTELDIAFHVAIADASRNPLFSVLVGSLSS 181          
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A7X9WKL5_9SPHN (FadR family transcriptional regulator n=1 Tax=Sphingomonas sp. G-3-2-10 TaxID=2728838 RepID=A0A7X9WKL5_9SPHN)

HSP 1 Score: 121 bits (304), Expect = 1.180e-31
Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSS 378
            GVSR+V REAF  L+AL+++D+  GRRARVG++DG+ +AT   H V   Q S  +VWD RR +ELR   LA   RT+ EA  ++ LA  M     N+ E TRID+ FH +IAD S N LF  M+ S
Sbjct:   45 GVSRAVMREAFGALAALRVLDVANGRRARVGAIDGSVMATSLDHAVSTAQISFNEVWDVRRTVELRIAALAAERRTDAEAKRIVELADAMTAAAENLPELTRIDVAFHQAIADASHNQLFRQMVRS 170          
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: UPI001C5BA31F (FadR family transcriptional regulator n=1 Tax=Stakelama flava TaxID=2860338 RepID=UPI001C5BA31F)

HSP 1 Score: 117 bits (293), Expect = 4.870e-30
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLF 360
            GVSR+VTREAF  L+AL++ID+G GRRARVG++DG+ +     H V   Q S+ Q+WD RR +ELR VELA LHR++++A  ++ LA  M +   ++E  T+ DI FH +IA  S N LF
Sbjct:   45 GVSRAVTREAFGALAALRLIDVGNGRRARVGAIDGSVMGASLDHAVVTAQVSMAQIWDVRRTLELRTVELAALHRSDQDAKLILQLADCMAEQHADLEALTQHDIAFHQAIARASGNALF 164          
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: UPI000289268C (FCD domain-containing protein n=1 Tax=Halomonas TaxID=2745 RepID=UPI000289268C)

HSP 1 Score: 117 bits (293), Expect = 5.500e-30
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSSCT 384
            GVSR+V REAFK L+A++I+++  GRR RV + D   +A    H +R  Q + QQ+ DARRAIELR VELA   R+E EA  L+SL ++M+     VE  T  DI FH ++A  +RNPLF V++SS T
Sbjct:   48 GVSRTVVREAFKSLAAMRILEMSAGRRTRVAAFDDTAIALTLSHALRTEQLNPQQLLDARRAIELRTVELAAGRRSEAEARELLSLVERMRTSYNEVEAMTEADIAFHVAVAQATRNPLFPVLVSSLT 175          
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A371XEB0_9HYPH (FadR family transcriptional regulator n=1 Tax=Mesorhizobium denitrificans TaxID=2294114 RepID=A0A371XEB0_9HYPH)

HSP 1 Score: 115 bits (289), Expect = 2.130e-29
Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLFSVMMSS 378
            GVSR+V REAF+ LSAL++ID+G GRRARV   DG+ +     H V  +Q SIQQ++D RR IELR   LA   RT  EAD +  +A  M+       +   +DI FH ++A  SRNPLF++++SS
Sbjct:   47 GVSRAVAREAFRSLSALRLIDVGNGRRARVAPADGSAIGRMIDHCVYTNQLSIQQIFDVRRTIELRTAALAAFRRTPAEADEISDIANNMRTSYAGTGDVMELDIAFHAAVARASRNPLFALLVSS 172          
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Match: A0A1V1PNT8_9PROT (Lactate-responsive regulator LldR in Firmicutes of GntR family n=1 Tax=alpha proteobacterium U9-1i TaxID=1605283 RepID=A0A1V1PNT8_9PROT)

HSP 1 Score: 115 bits (289), Expect = 2.510e-29
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQFSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEESTRIDIEFHNSIADYSRNPLF 360
            GVSR+V REAF  L+AL++ID+G GR+ RVG++DGA +A    H V   Q ++ ++WD RR IE+R   LA + RTE+EA  +++LA+ M K G ++    + DI FHN+IA  S N LF
Sbjct:   50 GVSRAVMREAFGALAALRLIDVGNGRKPRVGAIDGAVIAASLDHAVSTAQITVPEIWDVRRTIEMRTAALAAVSRTEEEAAEIVALAEAMAKDGDDLTSRIQHDIAFHNAIARASHNALF 169          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79266.18607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1GQY3_9GAMM1.760e-90100.00HTH gntR-type domain-containing protein n=1 Tax=Ha... [more]
A0A6C0U5F5_9GAMM4.000e-3651.16FadR family transcriptional regulator n=1 Tax=Kine... [more]
A0A2E7GML6_9ALTE3.590e-3448.84GntR family transcriptional regulator n=3 Tax=Alte... [more]
UPI001BDC95403.650e-3351.16FadR family transcriptional regulator n=1 Tax=Deni... [more]
A0A6N6L9U9_9PROT9.930e-3248.84FadR family transcriptional regulator n=1 Tax=Prot... [more]
A0A7X9WKL5_9SPHN1.180e-3149.21FadR family transcriptional regulator n=1 Tax=Sphi... [more]
UPI001C5BA31F4.870e-3050.00FadR family transcriptional regulator n=1 Tax=Stak... [more]
UPI000289268C5.500e-3049.22FCD domain-containing protein n=1 Tax=Halomonas Ta... [more]
A0A371XEB0_9HYPH2.130e-2947.62FadR family transcriptional regulator n=1 Tax=Meso... [more]
A0A1V1PNT8_9PROT2.510e-2947.50Lactate-responsive regulator LldR in Firmicutes of... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79266contigM-pyrifera_M_contig79266:552..968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score124.4
Seed ortholog evalue4.2e-26
Seed eggNOG ortholog1379701.JPJC01000249_gene843
KEGG koko:K05799
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FCD
EggNOG OGs1RBCJ@1224,2K46Q@204457,2U88W@28211,COG2186@1,COG2186@2
COG Functional cat.K
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.646336-CDS-M-pyrifera_M_contig79266:551..9681622816695.646336-CDS-M-pyrifera_M_contig79266:551..968Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79266 552..968 -
1692278124.7251801-CDS-M-pyrifera_M_contig79266:551..9681692278124.7251801-CDS-M-pyrifera_M_contig79266:551..968Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79266 552..968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79266.18607.1prot_M-pyrifera_M_contig79266.18607.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79266 552..968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79266.18607.1

>prot_M-pyrifera_M_contig79266.18607.1 ID=prot_M-pyrifera_M_contig79266.18607.1|Name=mRNA_M-pyrifera_M_contig79266.18607.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
GVSRSVTREAFKILSALQIIDIGGGRRARVGSLDGANLATFFHHGVRIHQ
FSIQQVWDARRAIELRAVELACLHRTEKEADHLISLAQQMKKVGGNVEES
TRIDIEFHNSIADYSRNPLFSVMMSSCTSSEPSGQIAA*
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mRNA from alignment at M-pyrifera_M_contig79266:552..968-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79266.18607.1 ID=mRNA_M-pyrifera_M_contig79266.18607.1|Name=mRNA_M-pyrifera_M_contig79266.18607.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig79266:552..968- (Macrocystis pyrifera P11B4 male)
GGGGTGAGTCGATCGGTGACCCGTGAGGCCTTCAAGATTCTATCGGCACT GCAGATTATTGATATTGGTGGTGGCCGCCGGGCCAGGGTGGGCTCACTGG ATGGGGCCAATCTGGCCACGTTCTTCCATCACGGGGTTCGCATTCACCAG TTCTCCATCCAGCAGGTTTGGGATGCCCGGCGCGCTATTGAGCTGCGCGC CGTTGAACTGGCCTGCCTGCATCGTACGGAGAAAGAGGCCGATCATCTTA TCTCGCTGGCGCAGCAGATGAAGAAAGTGGGTGGCAACGTCGAGGAGAGC ACCCGCATCGATATTGAGTTCCACAACAGCATAGCCGACTACTCACGCAA TCCGCTGTTCAGTGTGATGATGTCGTCCTGTACGTCGTCAGAACCTTCTG GACAGATCGCGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79266:552..968-

>mRNA_M-pyrifera_M_contig79266.18607.1 ID=mRNA_M-pyrifera_M_contig79266.18607.1|Name=mRNA_M-pyrifera_M_contig79266.18607.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig79266:552..968- (Macrocystis pyrifera P11B4 male)
GGGGTGAGTCGATCGGTGACCCGTGAGGCCTTCAAGATTCTATCGGCACT
GCAGATTATTGATATTGGTGGTGGCCGCCGGGCCAGGGTGGGCTCACTGG
ATGGGGCCAATCTGGCCACGTTCTTCCATCACGGGGTTCGCATTCACCAG
TTCTCCATCCAGCAGGTTTGGGATGCCCGGCGCGCTATTGAGCTGCGCGC
CGTTGAACTGGCCTGCCTGCATCGTACGGAGAAAGAGGCCGATCATCTTA
TCTCGCTGGCGCAGCAGATGAAGAAAGTGGGTGGCAACGTCGAGGAGAGC
ACCCGCATCGATATTGAGTTCCACAACAGCATAGCCGACTACTCACGCAA
TCCGCTGTTCAGTGTGATGATGTCGTCCTGTACGTCGTCAGAACCTTCTG
GACAGATCGCGGCCTGAGGGGTGAGTCGATCGGTGACCCGTGAGGCCTTC
AAGATTCTATCGGCACTGCAGATTATTGATATTGGTGGTGGCCGCCGGGC
CAGGGTGGGCTCACTGGATGGGGCCAATCTGGCCACGTTCTTCCATCACG
GGGTTCGCATTCACCAGTTCTCCATCCAGCAGGTTTGGGATGCCCGGCGC
GCTATTGAGCTGCGCGCCGTTGAACTGGCCTGCCTGCATCGTACGGAGAA
AGAGGCCGATCATCTTATCTCGCTGGCGCAGCAGATGAAGAAAGTGGGTG
GCAACGTCGAGGAGAGCACCCGCATCGATATTGAGTTCCACAACAGCATA
GCCGACTACTCACGCAATCCGCTGTTCAGTGTGATGATGTCGTCCTGTAC
GTCGTCAGAACCTTCTGGACAGATCGCGGCCTGA
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