mRNA_M-pyrifera_M_contig79223.18596.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79223.18596.1
Unique NamemRNA_M-pyrifera_M_contig79223.18596.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79223.18596.1 vs. uniprot
Match: A0A2H0WTB6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium CG09_land_8_20_14_0_10_41_9 TaxID=1974850 RepID=A0A2H0WTB6_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.300e-9
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 VPNFVGHDIQ-LSYQKFLDRWFVDFDFSFIGK-----VLEIGSGYGQLALNLLPRANEYICLDLDTQSLVQILKQEKISGLVADKHKLPI 252
            +P + G DI+  +Y KFL R+ + ++F ++ K     +L+IGSG G+LAL L    ++  C D+D +SL +I K++K+  L     KL I
Sbjct:   39 LPTYAGADIEEKNYMKFLKRFILTYEFGYLKKRQPMRILDIGSGSGELALQLSKFGHDVTCNDIDKKSLARISKRQKLKTLYGSIEKLSI 128
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79223.18596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2H0WTB6_9BACT2.300e-936.67Uncharacterized protein n=1 Tax=Candidatus Roizman... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79223contigM-pyrifera_M_contig79223:84..962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.1265028-CDS-M-pyrifera_M_contig79223:83..1671622816695.1265028-CDS-M-pyrifera_M_contig79223:83..167Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79223 84..167 +
1692278124.4272087-CDS-M-pyrifera_M_contig79223:83..1671692278124.4272087-CDS-M-pyrifera_M_contig79223:83..167Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79223 84..167 +
1622816695.1404445-CDS-M-pyrifera_M_contig79223:794..9621622816695.1404445-CDS-M-pyrifera_M_contig79223:794..962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79223 795..962 +
1692278124.4397542-CDS-M-pyrifera_M_contig79223:794..9621692278124.4397542-CDS-M-pyrifera_M_contig79223:794..962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79223 795..962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79223.18596.1prot_M-pyrifera_M_contig79223.18596.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79223 84..962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79223.18596.1

>prot_M-pyrifera_M_contig79223.18596.1 ID=prot_M-pyrifera_M_contig79223.18596.1|Name=mRNA_M-pyrifera_M_contig79223.18596.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
VPNFVGHDIQLSYQKFLDRWFVDFDFSFIGKVLEIGSGYGQLALNLLPRA
NEYICLDLDTQSLVQILKQEKISGLVADKHKLPI
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mRNA from alignment at M-pyrifera_M_contig79223:84..962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79223.18596.1 ID=mRNA_M-pyrifera_M_contig79223.18596.1|Name=mRNA_M-pyrifera_M_contig79223.18596.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=879bp|location=Sequence derived from alignment at M-pyrifera_M_contig79223:84..962+ (Macrocystis pyrifera P11B4 male)
GTGCCAAATTTTGTTGGTCATGATATTCAGTTGAGTTATCAAAAGTTTTT
GGATAGATGGTTTGTTGATTTTGATTTCTCATTTGTATATGACAAGATGG
GCTTTGAGCAACCATATGATTGCAAGCAAAATTACACTCACTTAGACTCT
TATAAACCATTGAGATTTGATCTAAGAATGCCGCATTTTTTAGATGATAA
AACCAGCTTAATTGTAATGCCGCAGCTTTCCTTCGATGGTTTTAAGGCAG
CAGGTGATGCTTTTTTCTTAGAAAGAAACTTATGGTCTCCATCAATTGAA
GACTGGAAAGCTTATTTGGATTATAGCAAAATATCAAAGTTTTATAGCGA
CAATAATGGTTCATTAAGCTATTTTCAACATTATCATGATAGTCGAATCT
ACAACAGACCAATGATGCTTGAAAAAGATAGAATCACGGTTTTATTGCTT
GATATTGCCAGTAGCATGCCAGGTGATTCTGATATTGACTTTGAAAATAT
AGTTCAGACTGTTAAAGCTCAGAGCTCTATAGTGGGTACACTGAGGTTAG
CTGATTTTTTAGCTGGAAAAGGTAACTTACTTGCTAATTCTCATAGTTTA
AATGATTTGTTAAATGTTCAACGCGAAGATCATAGCTATTTATCAGTAAA
AAAAGTAGATCCTGAGTTGAGGCAGGATATACAACATTTTGTTAGTTTTA
TTCCGGATAAGATAGGAAAGGTTTTAGAGATAGGTTCAGGATATGGGCAG
CTTGCACTAAATCTATTGCCTCGAGCAAATGAGTACATCTGTCTTGATTT
GGATACACAGAGTCTCGTTCAAATCTTGAAACAAGAAAAAATATCTGGCC
TTGTTGCCGATAAACATAAATTACCTATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79223:84..962+

>mRNA_M-pyrifera_M_contig79223.18596.1 ID=mRNA_M-pyrifera_M_contig79223.18596.1|Name=mRNA_M-pyrifera_M_contig79223.18596.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig79223:84..962+ (Macrocystis pyrifera P11B4 male)
GTGCCAAATTTTGTTGGTCATGATATTCAGTTGAGTTATCAAAAGTTTTT
GGATAGATGGTTTGTTGATTTTGATTTCTCATTTGTGCCAAATTTTGTTG
GTCATGATATTCAGTTGAGTTATCAAAAGTTTTTGGATAGATGGTTTGTT
GATTTTGATTTCTCATTTATAGGAAAGGTTTTAGAGATAGGTTCAGGATA
TGGGCAGCTTGCACTAAATCTATTGCCTCGAGCAAATGAGTACATCTGTC
TTGATTTGGATACACAGAGTCTCGTTCAAATCTTGAAACAAGAAAAAATA
TCTGGCCTTGTTGCCGATAAACATAAATTACCTATTATAGGAAAGGTTTT
AGAGATAGGTTCAGGATATGGGCAGCTTGCACTAAATCTATTGCCTCGAG
CAAATGAGTACATCTGTCTTGATTTGGATACACAGAGTCTCGTTCAAATC
TTGAAACAAGAAAAAATATCTGGCCTTGTTGCCGATAAACATAAATTACC
TATT
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