prot_M-pyrifera_M_contig79212.18594.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig79212.18594.1
Unique Nameprot_M-pyrifera_M_contig79212.18594.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length110
Homology
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BLAST of mRNA_M-pyrifera_M_contig79212.18594.1 vs. uniprot
Match: D7G6J3_ECTSI (Similar to ring finger protein 167 isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J3_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.460e-20
Identity = 60/110 (54.55%), Postives = 65/110 (59.09%), Query Frame = 0 
Query:    1 VSGSFLFNSTLILLGFVWCGVTFARLVCVHRARDSAAAASASFQLEHGAAPGGGGPFAAXXXXXXXXXXXXXXAGLTPAQIRRLELTNTLPVRRSFGGSKRAAVGGGAEV 110
            +S SFLFNSTLILLGFVWCGVTFARLVCVHRAR+SA + +       G     G  F                AGLTPAQIR LE TN LP  R FG SK A  GG  +V
Sbjct:   21 ISTSFLFNSTLILLGFVWCGVTFARLVCVHRARESALSGAHFSDRRGGRGDQTGAGFTGTGLGAATSAGP---AGLTPAQIRSLEQTNVLPKHRRFG-SKLAGGGGDMDV 126
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BLAST of mRNA_M-pyrifera_M_contig79212.18594.1 vs. uniprot
Match: A0A6H5JXB7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXB7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.890e-19
Identity = 57/110 (51.82%), Postives = 64/110 (58.18%), Query Frame = 0 
Query:    1 VSGSFLFNSTLILLGFVWCGVTFARLVCVHRARDSAAAASASFQLEHGAAPGGGGPFAAXXXXXXXXXXXXXXAGLTPAQIRRLELTNTLPVRRSFGGSKRAAVGGGAEV 110
            +S SFLFNSTL+LLGFVWCGVTFARLVCVHRAR+SA + +       G     G   A               AGLTPAQIR LE TN LP  R FG      VGGG ++
Sbjct:  223 ISSSFLFNSTLVLLGFVWCGVTFARLVCVHRARESALSGAHLSDRRGGRGDQTG---AGLTLTGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSK---LVGGGGDM 326
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79212.18594.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6J3_ECTSI9.460e-2054.55Similar to ring finger protein 167 isoform 1 n=1 T... [more]
A0A6H5JXB7_9PHAE4.890e-1951.82RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..110
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..28
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79212contigM-pyrifera_M_contig79212:252..581 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79212.18594.1mRNA_M-pyrifera_M_contig79212.18594.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig79212 252..581 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig79212.18594.1 ID=prot_M-pyrifera_M_contig79212.18594.1|Name=mRNA_M-pyrifera_M_contig79212.18594.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
VSGSFLFNSTLILLGFVWCGVTFARLVCVHRARDSAAAASASFQLEHGAA
PGGGGPFAAGAGGLGAATSGGAPAGLTPAQIRRLELTNTLPVRRSFGGSK
RAAVGGGAEV
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