mRNA_M-pyrifera_M_contig792.18592.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig792.18592.1
Unique NamemRNA_M-pyrifera_M_contig792.18592.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig792.18592.1 vs. uniprot
Match: D7FYZ2_ECTSI (GBBH-like_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ2_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.990e-20
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   10 VDYTDVLESDRSVQIQWEDGRTSHYDFTWLRVNCPSCLHESGQRTVFPGDVRADLKP 180
            V  T VL ++R V++ W+DG  S++D+TWLRVNCPS LHESGQRTVFPGDV   LKP
Sbjct:   80 VSSTQVLANERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTVFPGDVDPGLKP 136
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BLAST of mRNA_M-pyrifera_M_contig792.18592.1 vs. uniprot
Match: A0A6H5KBM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.220e-19
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   10 VDYTDVLESDRSVQIQWEDGRTSHYDFTWLRVNCPSCLHESGQRTVFPGDVRADLKP 180
            V  T+VL S+R V++ W+DG  S++D+TWLRVNCPS LHESGQRT+FPGDV   LKP
Sbjct:   78 VSSTEVLPSERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTLFPGDVDPGLKP 134
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BLAST of mRNA_M-pyrifera_M_contig792.18592.1 vs. uniprot
Match: UPI00097D6471 (gamma-butyrobetaine dioxygenase n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097D6471)

HSP 1 Score: 48.1 bits (113), Expect = 8.480e-5
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    7 AVDYTDVLESDRSVQIQWEDGRTSHYDFTWLRVNC--PSCLHESGQ 138
            +V +   LE  R V+++W+DG TS Y FTWLR NC  P C  +S Q
Sbjct:   65 SVRHARALEEARMVEVEWDDGGTSLYPFTWLRDNCQCPLCTLQSAQ 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig792.18592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYZ2_ECTSI1.990e-2064.91GBBH-like_N domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBM7_9PHAE6.220e-1964.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00097D64718.480e-547.83gamma-butyrobetaine dioxygenase n=1 Tax=Paralichth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig792contigM-pyrifera_M_contig792:99..287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.8797457-CDS-M-pyrifera_M_contig792:98..2871622816694.8797457-CDS-M-pyrifera_M_contig792:98..287Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig792 99..287 -
1692278124.2655594-CDS-M-pyrifera_M_contig792:98..2871692278124.2655594-CDS-M-pyrifera_M_contig792:98..287Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig792 99..287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig792.18592.1prot_M-pyrifera_M_contig792.18592.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig792 99..287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig792.18592.1

>prot_M-pyrifera_M_contig792.18592.1 ID=prot_M-pyrifera_M_contig792.18592.1|Name=mRNA_M-pyrifera_M_contig792.18592.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
AAAVDYTDVLESDRSVQIQWEDGRTSHYDFTWLRVNCPSCLHESGQRTVF
PGDVRADLKPTAV
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mRNA from alignment at M-pyrifera_M_contig792:99..287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig792.18592.1 ID=mRNA_M-pyrifera_M_contig792.18592.1|Name=mRNA_M-pyrifera_M_contig792.18592.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig792:99..287- (Macrocystis pyrifera P11B4 male)
GCAGCAGCGGTTGATTACACGGACGTTCTTGAAAGCGACCGATCCGTGCA
GATCCAGTGGGAAGACGGCCGCACTTCGCACTACGACTTCACCTGGCTGA
GGGTTAACTGCCCGTCCTGCCTGCACGAGAGCGGACAGCGGACGGTCTTC
CCGGGCGACGTGAGAGCGGACTTGAAGCCGACGGCGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig792:99..287-

>mRNA_M-pyrifera_M_contig792.18592.1 ID=mRNA_M-pyrifera_M_contig792.18592.1|Name=mRNA_M-pyrifera_M_contig792.18592.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig792:99..287- (Macrocystis pyrifera P11B4 male)
GCAGCAGCGGTTGATTACACGGACGTTCTTGAAAGCGACCGATCCGTGCA
GATCCAGTGGGAAGACGGCCGCACTTCGCACTACGACTTCACCTGGCTGA
GGGTTAACTGCCCGTCCTGCCTGCACGAGAGCGGACAGCGGACGGTCTTC
CCGGGCGACGTGAGAGCGGACTTGAAGCCGACGGCGGTGGCAGCAGCGGT
TGATTACACGGACGTTCTTGAAAGCGACCGATCCGTGCAGATCCAGTGGG
AAGACGGCCGCACTTCGCACTACGACTTCACCTGGCTGAGGGTTAACTGC
CCGTCCTGCCTGCACGAGAGCGGACAGCGGACGGTCTTCCCGGGCGACGT
GAGAGCGGACTTGAAGCCGACGGCGGTG
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