mRNA_M-pyrifera_M_contig79190.18591.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79190.18591.1
Unique NamemRNA_M-pyrifera_M_contig79190.18591.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: A0A5A8CC90_CAFRO (SANT domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CC90_CAFRO)

HSP 1 Score: 103 bits (258), Expect = 6.790e-24
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    7 ASSSTFALLRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWKETFRPPAPQE 279
            A  S F +LRR  LG L+SPLR  + LD+W+P + A FE  +CL GKDF  IA ++  K+ Q V++F+Y WK+SKNY +WK TFRPPA Q+
Sbjct:  293 ADGSGFIVLRRTVLGRLTSPLRRPTVLDKWSPYQAALFESAICLVGKDFNAIADLVEGKTEQDVMEFYYAWKKSKNYARWKATFRPPARQQ 383          
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: A0A5A8EGI9_CAFRO (SANT domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGI9_CAFRO)

HSP 1 Score: 102 bits (254), Expect = 7.710e-24
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    7 ASSSTFALLRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWKETFRPPA 270
            A  S F +LRR  LG L+SPLR  + LD+W+P + A FE  +CL GKDF  IA ++  K+ Q V++F+Y WK+SKNY +WK TFRPPA
Sbjct:  293 ADGSGFIVLRRTVLGRLTSPLRRPTVLDKWSPYQAALFESAICLVGKDFNAIADLVEGKTEQDVMEFYYAWKKSKNYARWKATFRPPA 380          
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: A0A835Z5U6_9STRA (SANT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.230e-20
Identity = 38/80 (47.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   19 TFALLRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWKETF 258
            ++AL R A L ++  PLR  SA+++W+P EVA+FEG +C++GK F KIA  + TK+ QQ ++F+Y+WK + +YK+WK+ F
Sbjct:   53 SYALERAAMLSMIQHPLRRPSAVEQWSPLEVAKFEGAMCIYGKQFHKIAAEVGTKTCQQAIEFYYVWKLTGHYKQWKKVF 132          
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: A0A7S2R001_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R001_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.880e-20
Identity = 35/82 (42.68%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   22 FALLRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWKETFRPP 267
            + + R    G+L+SPLR  + +++W+P E+A FE  V   GK F ++ K+IRTKST+++V+F+Y+WK++ +YK WK+ + PP
Sbjct:   44 YPIERITAYGVLTSPLRRPTVVEKWSPYEIATFEAAVAFLGKQFHRVQKLIRTKSTKEIVEFYYIWKKTHHYKMWKKQYIPP 125          
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: U6L4Z2_EIMTE (SANT domain-containing protein (Fragment) n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6L4Z2_EIMTE)

HSP 1 Score: 85.9 bits (211), Expect = 1.340e-19
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   31 LRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWK 249
            LR   + LL+SPLR A+ LD W P+EVA FE  +C FGKDF  + ++I+TKST+++VDF+YLWK++  Y  WK
Sbjct:   36 LRLTPVELLTSPLRHANVLDLWGPKEVALFEAGICKFGKDFNLLQRLIQTKSTKEIVDFYYLWKQTNRYDAWK 108          
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: U6MPK4_9EIME (Uncharacterized protein n=1 Tax=Eimeria necatrix TaxID=51315 RepID=U6MPK4_9EIME)

HSP 1 Score: 89.0 bits (219), Expect = 2.880e-19
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   31 LRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWKETF 258
            LR   + LL+SPLR A+ LD W P+EVA FE  +C FGKDF  + ++I+TKST+++VDF+YLWK++  Y  WK +F
Sbjct:   89 LRLTPVELLTSPLRHANVLDLWGPKEVALFEAGICKFGKDFNLLQRLIQTKSTKEIVDFYYLWKQTNRYDAWKRSF 164          
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: A0A7S1VAV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VAV0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.810e-19
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   22 FALLRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVI--RTKSTQQVVDFWYLWKRSKNYKKWKETFRPPAPQEND 285
            F L    TLG L+SPLR  + ++ W+P E+A FE  +  FGKDF KI+  +  R+KST+QVV+F+Y+WK++ + KKWK+++ P   +  D
Sbjct:   11 FPLETMTTLGYLTSPLRRPTVIERWSPYEIAMFEAGLTQFGKDFYKISTALLKRSKSTKQVVEFYYIWKKTSHGKKWKDSYTPDFVESED 100          
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: A0A7S0KBC3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBC3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.320e-19
Identity = 36/74 (48.65%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   43 TLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWKETFRP 264
            TLGLL+SPLR  + +++W+P EVA FE  + L+GK F  + KV++TKST+++V+F+Y+WK++ +YK+WK+   P
Sbjct:  286 TLGLLTSPLRRPTVIEKWSPYEVASFEAALTLYGKVFHSVQKVVKTKSTKEIVEFYYVWKKTSHYKRWKQQHEP 359          
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: B7FP89_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP89_PHATC)

HSP 1 Score: 85.1 bits (209), Expect = 2.070e-18
Identity = 36/81 (44.44%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   22 FALLRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWKETFRP 264
            F L   + L  ++SPLR  + ++ W+P E+A FEG +  +GKDF  I K I+TKSTQ+++DF+Y+WK++ +Y+ WK+T+ P
Sbjct:  116 FPLETVSALAFVASPLRRPTVVERWSPYEIAIFEGAMAQYGKDFYHIHKFIKTKSTQEIIDFYYVWKKTSHYRLWKKTYIP 196          
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Match: A0A7S4RT22_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RT22_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.450e-18
Identity = 32/79 (40.51%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   22 FALLRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKDFAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWKETF 258
            + + R  TLGLL++P R  S +++W+P E+A FE  + L+GK F K+ K++R+K+T+++++F+Y+WK+S +Y++WK  +
Sbjct:  153 YPIERLTTLGLLTNPCRRPSPIEKWSPYEIAMFEASLSLYGKVFHKVQKIVRSKTTKEIIEFYYIWKKSSHYRRWKGQY 231          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79190.18591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CC90_CAFRO6.790e-2452.75SANT domain-containing protein n=1 Tax=Cafeteria r... [more]
A0A5A8EGI9_CAFRO7.710e-2453.41SANT domain-containing protein n=2 Tax=Cafeteria r... [more]
A0A835Z5U6_9STRA2.230e-2047.50SANT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2R001_9STRA8.880e-2042.68Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
U6L4Z2_EIMTE1.340e-1953.42SANT domain-containing protein (Fragment) n=1 Tax=... [more]
U6MPK4_9EIME2.880e-1952.63Uncharacterized protein n=1 Tax=Eimeria necatrix T... [more]
A0A7S1VAV0_9STRA4.810e-1944.44Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S0KBC3_9STRA5.320e-1948.65Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
B7FP89_PHATC2.070e-1844.44Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S4RT22_9STRA9.450e-1840.51Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79190contigM-pyrifera_M_contig79190:272..559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2850.Phatr42704
Hectar predicted targeting categorysignal peptide
EggNOG OGs2D00B@1,2SCAZ@2759,2XHIP@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.847266-CDS-M-pyrifera_M_contig79190:271..5591622816694.847266-CDS-M-pyrifera_M_contig79190:271..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79190 272..559 -
1692278124.2465866-CDS-M-pyrifera_M_contig79190:271..5591692278124.2465866-CDS-M-pyrifera_M_contig79190:271..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79190 272..559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79190.18591.1prot_M-pyrifera_M_contig79190.18591.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79190 272..559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79190.18591.1

>prot_M-pyrifera_M_contig79190.18591.1 ID=prot_M-pyrifera_M_contig79190.18591.1|Name=mRNA_M-pyrifera_M_contig79190.18591.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
AGASSSTFALLRRATLGLLSSPLRPASALDEWAPREVAQFEGCVCLFGKD
FAKIAKVIRTKSTQQVVDFWYLWKRSKNYKKWKETFRPPAPQEND*
back to top

mRNA from alignment at M-pyrifera_M_contig79190:272..559-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79190.18591.1 ID=mRNA_M-pyrifera_M_contig79190.18591.1|Name=mRNA_M-pyrifera_M_contig79190.18591.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig79190:272..559- (Macrocystis pyrifera P11B4 male)
GCTGGTGCCTCCTCCTCCACCTTCGCACTCCTCCGAAGAGCCACATTAGG CCTCCTCTCCTCCCCACTCCGACCAGCCTCTGCTCTCGATGAGTGGGCAC CCCGAGAAGTCGCACAGTTCGAGGGCTGTGTCTGCCTCTTTGGGAAAGAC TTTGCGAAAATCGCAAAGGTCATCCGCACAAAGTCCACACAGCAGGTCGT AGACTTCTGGTACCTCTGGAAACGATCCAAAAACTACAAAAAGTGGAAGG AAACATTCAGACCCCCGGCACCACAAGAAAACGACTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig79190:272..559-

>mRNA_M-pyrifera_M_contig79190.18591.1 ID=mRNA_M-pyrifera_M_contig79190.18591.1|Name=mRNA_M-pyrifera_M_contig79190.18591.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig79190:272..559- (Macrocystis pyrifera P11B4 male)
GCTGGTGCCTCCTCCTCCACCTTCGCACTCCTCCGAAGAGCCACATTAGG
CCTCCTCTCCTCCCCACTCCGACCAGCCTCTGCTCTCGATGAGTGGGCAC
CCCGAGAAGTCGCACAGTTCGAGGGCTGTGTCTGCCTCTTTGGGAAAGAC
TTTGCGAAAATCGCAAAGGTCATCCGCACAAAGTCCACACAGCAGGTCGT
AGACTTCTGGTACCTCTGGAAACGATCCAAAAACTACAAAAAGTGGAAGG
AAACATTCAGACCCCCGGCACCACAAGAAAACGACTGAGCTGGTGCCTCC
TCCTCCACCTTCGCACTCCTCCGAAGAGCCACATTAGGCCTCCTCTCCTC
CCCACTCCGACCAGCCTCTGCTCTCGATGAGTGGGCACCCCGAGAAGTCG
CACAGTTCGAGGGCTGTGTCTGCCTCTTTGGGAAAGACTTTGCGAAAATC
GCAAAGGTCATCCGCACAAAGTCCACACAGCAGGTCGTAGACTTCTGGTA
CCTCTGGAAACGATCCAAAAACTACAAAAAGTGGAAGGAAACATTCAGAC
CCCCGGCACCACAAGAAAACGACTGA
back to top