mRNA_M-pyrifera_M_contig79134.18580.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79134.18580.1
Unique NamemRNA_M-pyrifera_M_contig79134.18580.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79134.18580.1 vs. uniprot
Match: A9UZZ7_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UZZ7_MONBE)

HSP 1 Score: 97.8 bits (242), Expect = 4.640e-21
Identity = 56/136 (41.18%), Postives = 75/136 (55.15%), Query Frame = 1 
Query:    1 QFVPKVYEDTVVYFAFVALLVACGVATYISPAFRSTMHSRLPL-SPTCLRLPHAANRLLFDWWWPWTTGVSVGELFVLGSVTALYIYWIQFWGAVFAIPFERVLKYHRLLGGLTWLLTTLHMLIWWGKWARQSLLV 405
            QF  KVYEDT+VYFAF+  +V  GV T+ SP  + TMH+R  + +P    LP+               GV+VGE  +L +V  L  YW+ FW   +     R +KYHR LG + W L T HM++W  KW R S L+
Sbjct:  217 QFYFKVYEDTLVYFAFLTFVVVLGVITHFSPRIQRTMHTRYKVYAPLSSYLPY---------------GVTVGETLLLLAVAGLAGYWLYFWRWGYDRITVRAIKYHRALGVIVWTLVTSHMILWMIKWLRDSTLL 337
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BLAST of mRNA_M-pyrifera_M_contig79134.18580.1 vs. uniprot
Match: A0A5A8EE12_CAFRO (FAD-binding FR-type domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8EE12_CAFRO)

HSP 1 Score: 67.0 bits (162), Expect = 2.790e-10
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  226 VLGSVTALYIYWI-------QFWGAVFAIPFERVLKYHRLLGGLTWLLTTLHMLIWWGKWARQSLL 402
            VLG ++ L + ++         W A   +PFER +KYHR+LG  +WLL +LHM +W GKWARQ +L
Sbjct:  397 VLGHLSTLVMSFLLMPSSRNSLWEAAIGVPFERAVKYHRVLGAFSWLLVSLHMFVWLGKWARQGIL 462
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BLAST of mRNA_M-pyrifera_M_contig79134.18580.1 vs. uniprot
Match: A0A482RKH4_9ARCH (Ferric oxidoreductase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RKH4_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 3.930e-10
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  226 VLGSVTALYIYWIQF-------WGAVFAIPFERVLKYHRLLGGLTWLLTTLHMLIWWGKWARQSLL 402
            VLG +T L +  + F       W +VF +PFER +KYHR LG LTWLL TLHM++W  KWA++  L
Sbjct:  171 VLGHMTTLTMSLLTFPMARNSVWESVFGMPFERAVKYHRALGRLTWLLVTLHMVLWDIKWAKEGTL 236
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79134.18580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A9UZZ7_MONBE4.640e-2141.18Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A5A8EE12_CAFRO2.790e-1045.45FAD-binding FR-type domain-containing protein n=4 ... [more]
A0A482RKH4_9ARCH3.930e-1050.00Ferric oxidoreductase domain-containing protein (F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79134contigM-pyrifera_M_contig79134:44..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue4.5e-17
Seed eggNOG ortholog81824.XP_001746171.1
KEGG koko:K00521,ko:K13411
KEGG TC5.B.1.2
KEGG Pathwayko04013,ko04624,map04013,map04624
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
EC1.16.1.7,1.6.3.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.388233-CDS-M-pyrifera_M_contig79134:43..3191622816694.388233-CDS-M-pyrifera_M_contig79134:43..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79134 44..319 +
1692278123.9934309-CDS-M-pyrifera_M_contig79134:43..3191692278123.9934309-CDS-M-pyrifera_M_contig79134:43..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79134 44..319 +
1622816694.4095478-CDS-M-pyrifera_M_contig79134:460..5891622816694.4095478-CDS-M-pyrifera_M_contig79134:460..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79134 461..589 +
1692278124.0084546-CDS-M-pyrifera_M_contig79134:460..5891692278124.0084546-CDS-M-pyrifera_M_contig79134:460..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79134 461..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79134.18580.1prot_M-pyrifera_M_contig79134.18580.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79134 44..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79134.18580.1

>prot_M-pyrifera_M_contig79134.18580.1 ID=prot_M-pyrifera_M_contig79134.18580.1|Name=mRNA_M-pyrifera_M_contig79134.18580.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
QFVPKVYEDTVVYFAFVALLVACGVATYISPAFRSTMHSRLPLSPTCLRL
PHAANRLLFDWWWPWTTGVSVGELFVLGSVTALYIYWIQFWGAVFAIPFE
RVLKYHRLLGGLTWLLTTLHMLIWWGKWARQSLLV
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mRNA from alignment at M-pyrifera_M_contig79134:44..589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79134.18580.1 ID=mRNA_M-pyrifera_M_contig79134.18580.1|Name=mRNA_M-pyrifera_M_contig79134.18580.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig79134:44..589+ (Macrocystis pyrifera P11B4 male)
CAGTTCGTCCCAAAAGTGTACGAGGACACTGTGGTGTACTTTGCCTTTGT
GGCTCTGCTGGTGGCCTGCGGAGTGGCAACGTACATTTCTCCAGCGTTTC
GTAGCACCATGCACTCCCGACTCCCGCTGTCCCCAACTTGCCTCCGCTTA
CCCCACGCCGCCAATCGTTTGCTCTTCGACTGGTGGTGGCCGTGGACTAC
TGGGGTGAGTGTGGGAGAGCTGTTTGTTCTGGGCAGTGTCACGGCGCTGT
ACATCTACTGGATCCAGTTTTGGGGAGTCCGTTACGACCGCATTCGCACA
GAAGCAGCACTGGATGACCTGCAGAACGACCAAATTGCAGCTAGGGTCGT
GGGTCACGTTCTCACCCTCACCATGTCCTTCCTCCTCCTCCCCGCCACGC
GCAATTCTGCGCTCGAGGCTGTCTTCGCAATCCCCTTTGAACGAGTGCTC
AAGTACCACCGCCTCCTCGGAGGGCTCACCTGGCTCCTCACCACCCTCCA
CATGCTCATCTGGTGGGGAAAGTGGGCCCGGCAATCCCTCCTCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79134:44..589+

>mRNA_M-pyrifera_M_contig79134.18580.1 ID=mRNA_M-pyrifera_M_contig79134.18580.1|Name=mRNA_M-pyrifera_M_contig79134.18580.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig79134:44..589+ (Macrocystis pyrifera P11B4 male)
CAGTTCGTCCCAAAAGTGTACGAGGACACTGTGGTGTACTTTGCCTTTGT
GGCTCTGCTGGTGGCCTGCGGAGTGGCAACGTACATTTCTCCAGCGTTTC
GTAGCACCATGCACTCCCGACTCCCGCTGTCCCCAACTTGCCTCCGCTTA
CCCCACGCCGCCAATCGTTTGCTCTTCGACTGGTGGTGGCCGTGGACTAC
TGGGGTGAGTGTGGGAGAGCTGTTTGTTCTGGGCAGTGTCACGGCGCTGT
ACATCTACTGGATCCAGTTTTGGGGACAGTTCGTCCCAAAAGTGTACGAG
GACACTGTGGTGTACTTTGCCTTTGTGGCTCTGCTGGTGGCCTGCGGAGT
GGCAACGTACATTTCTCCAGCGTTTCGTAGCACCATGCACTCCCGACTCC
CGCTGTCCCCAACTTGCCTCCGCTTACCCCACGCCGCCAATCGTTTGCTC
TTCGACTGGTGGTGGCCGTGGACTACTGGGGTGAGTGTGGGAGAGCTGTT
TGTTCTGGGCAGTGTCACGGCGCTGTACATCTACTGGATCCAGTTTTGGG
GAGCTGTCTTCGCAATCCCCTTTGAACGAGTGCTCAAGTACCACCGCCTC
CTCGGAGGGCTCACCTGGCTCCTCACCACCCTCCACATGCTCATCTGGTG
GGGAAAGTGGGCCCGGCAATCCCTCCTCGTCGCTGTCTTCGCAATCCCCT
TTGAACGAGTGCTCAAGTACCACCGCCTCCTCGGAGGGCTCACCTGGCTC
CTCACCACCCTCCACATGCTCATCTGGTGGGGAAAGTGGGCCCGGCAATC
CCTCCTCGTC
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