mRNA_M-pyrifera_M_contig79069.18571.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79069.18571.1
Unique NamemRNA_M-pyrifera_M_contig79069.18571.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79069.18571.1 vs. uniprot
Match: A0A1Q3IYZ4_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium 65-7 TaxID=1895712 RepID=A0A1Q3IYZ4_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 9.970e-7
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1
Query:  103 QAFEGKDYANAALLFLKAANADNPLAQGALGLMYLDGKGVEKDLDEAFRWL 255
            +AF+ +DY+ A  L+   A   NP AQ  LG+MYLDGKGV ++++EA RW+
Sbjct:   29 RAFQNRDYSRAVSLWRPLAVQGNPTAQNNLGIMYLDGKGVPRNMNEAVRWM 79          
BLAST of mRNA_M-pyrifera_M_contig79069.18571.1 vs. uniprot
Match: A0A843ICG6_9ARCH (Sel1 repeat family protein n=1 Tax=Candidatus Methanomethylophilaceae archaeon TaxID=2517205 RepID=A0A843ICG6_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 1.620e-6
Identity = 33/85 (38.82%), Postives = 41/85 (48.24%), Query Frame = 1
Query:   70 SVIVQTVGLAKQAFEGKDYANAALLFLKAANADNPLAQGALGLMYLDGKGVEKDLDEAFRWLWAGACAQDGPAMRGLATMYLEGL 324
            S +     + K+    KD+A A   +   A  D+  AQ  +G MYL GKGV KDLD A  WL   A      AM  L  MY +GL
Sbjct:  117 SELFSLYDVGKRGLVRKDHAEAIRFYTNCAEMDDVHAQDVIGFMYLMGKGVRKDLDNAMYWLRKAADNGSSSAMYHLGQMYDQGL 201          
BLAST of mRNA_M-pyrifera_M_contig79069.18571.1 vs. uniprot
Match: A0A7S7NN26_9BACT (Sel1 repeat family protein n=1 Tax=Paludibaculum fermentans TaxID=1473598 RepID=A0A7S7NN26_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.920e-6
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 1
Query:  118 KDYANAALLFLKAANADNPLAQGALGLMYLDGKGVEKDLDEAFRWLWAGACAQDGPAMRGLATM 309
            KDY  A   +L +AN  +P AQ ++GL+Y  GKGV KDL +A+ WL     A  GP    LA +
Sbjct:   55 KDYVQAHHWYLLSANQGDPWAQASIGLLYRFGKGVPKDLVQAYMWLSLATSATHGPDSDSLAEL 118          
BLAST of mRNA_M-pyrifera_M_contig79069.18571.1 vs. uniprot
Match: I2K5E9_9PROT (Beta-lactamase n=3 Tax=unclassified Sulfurovum TaxID=2646778 RepID=I2K5E9_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 2.170e-5
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query:   76 IVQTVGLAKQAFEG--KDYANAALL-----FLKAANADNPLAQGALGLMYLDGKGVEKDLDEAFRWLWAGACAQDGPAMRGLATMY 312
            I+ TV L    F    +DY N   +     F + A  D+  AQ  +GL+Y +GKGV+KDLD+A +W    A   +GPA   LA +Y
Sbjct:    8 IIATVTLLANDFNQAVEDYNNGGYIKALNTFYELAKKDDAKAQYNVGLIYANGKGVQKDLDKAKKWYEKAAKQGNGPAQYNLAQLY 93          
BLAST of mRNA_M-pyrifera_M_contig79069.18571.1 vs. uniprot
Match: UPI000490F183 (sel1 repeat family protein n=2 Tax=unclassified Methylophilus TaxID=2630143 RepID=UPI000490F183)

HSP 1 Score: 50.8 bits (120), Expect = 3.810e-5
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   55 AAMSPSVI-VQTVGLAKQAFEGKDYANAALLFLKAANADNPLAQGALGLMYLDGKGVEKDLDEAFRW 252
            A +S S+    T+  AKQ    KDYA A  ++L  AN ++  A   LGLMY DG GV K+LDEA +W
Sbjct:   25 ALLSTSLTQANTLEEAKQKLAEKDYAAAHAIYLSLANQNDAKACYNLGLMYQDGDGVAKNLDEAVKW 91          
BLAST of mRNA_M-pyrifera_M_contig79069.18571.1 vs. uniprot
Match: A0A2W5QN45_VARPD (Uncharacterized protein n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A2W5QN45_VARPD)

HSP 1 Score: 50.8 bits (120), Expect = 3.870e-5
Identity = 34/86 (39.53%), Postives = 43/86 (50.00%), Query Frame = 1
Query:   43 VEGGAAMSPSVIVQTVGLAKQAFEGKDYANAALLFLKAANADNPLAQGALGLMYLDGKGVEKDLDEAFRWLWAGACAQDGPAMRGL 300
            V+ GA      + +  G A+ A    D+A  A L   AA A NP A  ALGL+YL G GVE D++ A R+  A A      A R L
Sbjct:  164 VDAGALDELKTVTEAAGRARAA---GDFAQLATLLRAAAEAGNPTAAEALGLLYLQGNGVEADMEAAVRFWRAAAGQGSARAQRNL 246          
BLAST of mRNA_M-pyrifera_M_contig79069.18571.1 vs. uniprot
Match: A0A2E8XRQ0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XRQ0_9PROT)

HSP 1 Score: 48.1 bits (113), Expect = 4.630e-5
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1
Query:  103 QAFEGKDYANAALLFLKAANADNPLAQGALGLMYLDGKGVEKDLDEAFRWL 255
            +A+E KDYA A  ++L  A+A    AQ  LG +Y +G+GV+++L EA RWL
Sbjct:    8 RAYEVKDYARAYAIWLPLADAGGASAQFHLGALYFEGRGVDRNLGEAKRWL 58          
BLAST of mRNA_M-pyrifera_M_contig79069.18571.1 vs. uniprot
Match: UPI000646CE43 (sel1 repeat family protein n=4 Tax=Methylophilus TaxID=16 RepID=UPI000646CE43)

HSP 1 Score: 50.4 bits (119), Expect = 5.250e-5
Identity = 31/78 (39.74%), Postives = 42/78 (53.85%), Query Frame = 1
Query:   85 TVGLAKQAFEGKDYANAALLFLKAANADNPLAQGALGLMYLDGKGVEKDLDEAFRWLWAGACAQDGPAMRGLATMYLE 318
            T+  AKQ    KDYA A  ++L  AN ++  A   LGLMY DG GV K++DEA +W    A      A   LA++  +
Sbjct:   36 TLEEAKQKLLQKDYAGAHAIYLSLANQNDTKACYNLGLMYQDGDGVAKNMDEAVKWYTKSAELNYKEAQYTLASLVFQ 113          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79069.18571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A1Q3IYZ4_9PROT9.970e-749.02Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A843ICG6_9ARCH1.620e-638.82Sel1 repeat family protein n=1 Tax=Candidatus Meth... [more]
A0A7S7NN26_9BACT1.920e-643.75Sel1 repeat family protein n=1 Tax=Paludibaculum f... [more]
I2K5E9_9PROT2.170e-538.37Beta-lactamase n=3 Tax=unclassified Sulfurovum Tax... [more]
UPI000490F1833.810e-546.27sel1 repeat family protein n=2 Tax=unclassified Me... [more]
A0A2W5QN45_VARPD3.870e-539.53Uncharacterized protein n=2 Tax=Burkholderiales Ta... [more]
A0A2E8XRQ0_9PROT4.630e-547.06Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI000646CE435.250e-539.74sel1 repeat family protein n=4 Tax=Methylophilus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79069contigM-pyrifera_M_contig79069:634..957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.891357-CDS-M-pyrifera_M_contig79069:633..9571622816693.891357-CDS-M-pyrifera_M_contig79069:633..957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79069 634..957 +
1692278123.6777172-CDS-M-pyrifera_M_contig79069:633..9571692278123.6777172-CDS-M-pyrifera_M_contig79069:633..957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79069 634..957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79069.18571.1prot_M-pyrifera_M_contig79069.18571.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79069 634..957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79069.18571.1

>prot_M-pyrifera_M_contig79069.18571.1 ID=prot_M-pyrifera_M_contig79069.18571.1|Name=mRNA_M-pyrifera_M_contig79069.18571.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
NKRNEEGKEEAEANVEGGAAMSPSVIVQTVGLAKQAFEGKDYANAALLFL
KAANADNPLAQGALGLMYLDGKGVEKDLDEAFRWLWAGACAQDGPAMRGL
ATMYLEGL
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mRNA from alignment at M-pyrifera_M_contig79069:634..957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79069.18571.1 ID=mRNA_M-pyrifera_M_contig79069.18571.1|Name=mRNA_M-pyrifera_M_contig79069.18571.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig79069:634..957+ (Macrocystis pyrifera P11B4 male)
AACAAAAGGAATGAAGAAGGGAAGGAGGAGGCAGAGGCCAATGTGGAGGG CGGTGCAGCAATGTCTCCTAGCGTGATAGTACAGACGGTGGGCCTGGCGA AACAGGCATTTGAAGGCAAGGACTATGCCAACGCTGCTCTGCTCTTCCTC AAGGCAGCGAATGCTGACAACCCACTGGCCCAGGGGGCGCTGGGTTTGAT GTACCTCGATGGCAAGGGCGTGGAGAAGGATCTGGATGAGGCATTTCGCT GGCTTTGGGCTGGTGCTTGTGCGCAAGATGGCCCTGCAATGCGCGGCCTG GCAACCATGTATCTGGAGGGACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79069:634..957+

>mRNA_M-pyrifera_M_contig79069.18571.1 ID=mRNA_M-pyrifera_M_contig79069.18571.1|Name=mRNA_M-pyrifera_M_contig79069.18571.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig79069:634..957+ (Macrocystis pyrifera P11B4 male)
AACAAAAGGAATGAAGAAGGGAAGGAGGAGGCAGAGGCCAATGTGGAGGG
CGGTGCAGCAATGTCTCCTAGCGTGATAGTACAGACGGTGGGCCTGGCGA
AACAGGCATTTGAAGGCAAGGACTATGCCAACGCTGCTCTGCTCTTCCTC
AAGGCAGCGAATGCTGACAACCCACTGGCCCAGGGGGCGCTGGGTTTGAT
GTACCTCGATGGCAAGGGCGTGGAGAAGGATCTGGATGAGGCATTTCGCT
GGCTTTGGGCTGGTGCTTGTGCGCAAGATGGCCCTGCAATGCGCGGCCTG
GCAACCATGTATCTGGAGGGACTGAACAAAAGGAATGAAGAAGGGAAGGA
GGAGGCAGAGGCCAATGTGGAGGGCGGTGCAGCAATGTCTCCTAGCGTGA
TAGTACAGACGGTGGGCCTGGCGAAACAGGCATTTGAAGGCAAGGACTAT
GCCAACGCTGCTCTGCTCTTCCTCAAGGCAGCGAATGCTGACAACCCACT
GGCCCAGGGGGCGCTGGGTTTGATGTACCTCGATGGCAAGGGCGTGGAGA
AGGATCTGGATGAGGCATTTCGCTGGCTTTGGGCTGGTGCTTGTGCGCAA
GATGGCCCTGCAATGCGCGGCCTGGCAACCATGTATCTGGAGGGACTG
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