mRNA_M-pyrifera_M_contig790.18557.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig790.18557.1
Unique NamemRNA_M-pyrifera_M_contig790.18557.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig790.18557.1 vs. uniprot
Match: Q8QNP7_ESV1K (EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP7_ESV1K)

HSP 1 Score: 235 bits (599), Expect = 1.290e-74
Identity = 119/173 (68.79%), Postives = 137/173 (79.19%), Query Frame = 3 
Query:  120 G*KEPWHFAHHPKDNDECSAGGETYIHLAAKLLLVTYITRFEFFAHCGSLRPVHKRGYGGCTAVHEHRYDGVHSADVGVLRDGKLEATIEVMATHKTEGESLASRISCVGEDNVWEVEAMRVLKQQRRLTLTTDTIRLSSLLRLTDCTKCAQESREKHDRWVKQMTTGKLESE 638
            G K  WHFAHH  ++DECSAGGETYIHLAAKLLLVTYITRFEF + CG LR  H++ Y GCTAV E+RYDGVHSADV VLRDG LEA IEVMATHKTEGE LASRI  VG DNVW V+AM V +Q++RL+LTTDTI ++SLL+L DC +CAQE +E  +R  K M   K +SE
Sbjct:   41 GQKNQWHFAHHSNNDDECSAGGETYIHLAAKLLLVTYITRFEFASKCGRLRHDHEKQYQGCTAVQEYRYDGVHSADVAVLRDGNLEAIIEVMATHKTEGEPLASRIERVGADNVWGVDAMDVWRQRKRLSLTTDTIHVASLLKLEDCAECAQEGKEAQERREKLMAIEKNKSE 213
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig790.18557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNP7_ESV1K1.290e-7468.79EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig790contigM-pyrifera_M_contig790:16408..17045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size638
Cds size489
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.127734-CDS-M-pyrifera_M_contig790:16407..168961622816693.127734-CDS-M-pyrifera_M_contig790:16407..16896Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig790 16408..16896 +
1692278123.3697395-CDS-M-pyrifera_M_contig790:16407..168961692278123.3697395-CDS-M-pyrifera_M_contig790:16407..16896Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig790 16408..16896 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.139123-UTR-M-pyrifera_M_contig790:16896..170451622816693.139123-UTR-M-pyrifera_M_contig790:16896..17045Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig790 16897..17045 +
1692278123.3868291-UTR-M-pyrifera_M_contig790:16896..170451692278123.3868291-UTR-M-pyrifera_M_contig790:16896..17045Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig790 16897..17045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig790.18557.1prot_M-pyrifera_M_contig790.18557.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig790 16408..16896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig790.18557.1

>prot_M-pyrifera_M_contig790.18557.1 ID=prot_M-pyrifera_M_contig790.18557.1|Name=mRNA_M-pyrifera_M_contig790.18557.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MPLLIPVVNDSKGETVTPTCYKDDGPFTCLGCAKPLVLRQGEKNRGISRT
IPRTMTSVLPAGKPTSTWPRNCCWSRTSLGSSSSPTVVACDPFINEGTEG
ARRYMSIATTVCTPRTWACSGTGSWRLPLRSWRRTRLRENRWLPGFLAWG
KTMCGRWKRCAY*
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mRNA from alignment at M-pyrifera_M_contig790:16408..17045+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig790.18557.1 ID=mRNA_M-pyrifera_M_contig790.18557.1|Name=mRNA_M-pyrifera_M_contig790.18557.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=638bp|location=Sequence derived from alignment at M-pyrifera_M_contig790:16408..17045+ (Macrocystis pyrifera P11B4 male)
ATGCCCCTTCTCATCCCTGTCGTAAACGATTCTAAAGGCGAGACGGTGAC
GCCGACCTGTTACAAGGACGACGGCCCATTCACGTGTCTCGGTTGTGCCA
AGCCGCTGGTCCTGAGGCAGGGTGAAAAGAACCGTGGCATTTCGCGCACC
ATCCCAAGGACAATGACGAGTGTTCTGCCGGCGGGGAAACCTACATCCAC
TTGGCCGCGAAATTGTTGTTGGTCACGTACATCACTAGGTTCGAGTTCTT
CGCCCACTGTGGTAGCCTGCGACCCGTTCATAAACGAGGGTACGGAGGGT
GCACGGCGGTACATGAGCATCGCTACGACGGTGTGCACTCCGCGGACGTG
GGCGTGCTCCGGGACGGGAAGTTGGAGGCTACCATTGAGGTCATGGCGAC
GCACAAGACTGAGGGAGAATCGTTGGCTTCCAGGATTTCTTGCGTGGGGG
AAGACAATGTGTGGGAGGTGGAAGCGATGCGCGTATTGAAACAGCAGAGA
CGGCTGACATTGACGACTGACACCATTCGGCTATCTAGTTTGCTCAGGCT
GACGGACTGTACCAAATGTGCGCAGGAGAGCAGGGAGAAGCACGACCGAT
GGGTAAAACAGATGACGACTGGGAAGTTAGAGTCCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig790:16408..17045+

>mRNA_M-pyrifera_M_contig790.18557.1 ID=mRNA_M-pyrifera_M_contig790.18557.1|Name=mRNA_M-pyrifera_M_contig790.18557.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig790:16408..17045+ (Macrocystis pyrifera P11B4 male)
ATGCCCCTTCTCATCCCTGTCGTAAACGATTCTAAAGGCGAGACGGTGAC
GCCGACCTGTTACAAGGACGACGGCCCATTCACGTGTCTCGGTTGTGCCA
AGCCGCTGGTCCTGAGGCAGGGTGAAAAGAACCGTGGCATTTCGCGCACC
ATCCCAAGGACAATGACGAGTGTTCTGCCGGCGGGGAAACCTACATCCAC
TTGGCCGCGAAATTGTTGTTGGTCACGTACATCACTAGGTTCGAGTTCTT
CGCCCACTGTGGTAGCCTGCGACCCGTTCATAAACGAGGGTACGGAGGGT
GCACGGCGGTACATGAGCATCGCTACGACGGTGTGCACTCCGCGGACGTG
GGCGTGCTCCGGGACGGGAAGTTGGAGGCTACCATTGAGGTCATGGCGAC
GCACAAGACTGAGGGAGAATCGTTGGCTTCCAGGATTTCTTGCGTGGGGG
AAGACAATGTGTGGGAGGTGGAAGCGATGCGCGTATTGAATGCCCCTTCT
CATCCCTGTCGTAAACGATTCTAAAGGCGAGACGGTGACGCCGACCTGTT
ACAAGGACGACGGCCCATTCACGTGTCTCGGTTGTGCCAAGCCGCTGGTC
CTGAGGCAGGGTGAAAAGAACCGTGGCATTTCGCGCACCATCCCAAGGAC
AATGACGAGTGTTCTGCCGGCGGGGAAACCTACATCCACTTGGCCGCGAA
ATTGTTGTTGGTCACGTACATCACTAGGTTCGAGTTCTTCGCCCACTGTG
GTAGCCTGCGACCCGTTCATAAACGAGGGTACGGAGGGTGCACGGCGGTA
CATGAGCATCGCTACGACGGTGTGCACTCCGCGGACGTGGGCGTGCTCCG
GGACGGGAAGTTGGAGGCTACCATTGAGGTCATGGCGACGCACAAGACTG
AGGGAGAATCGTTGGCTTCCAGGATTTCTTGCGTGGGGGAAGACAATGTG
TGGGAGGTGGAAGCGATGCGCGTATTGA
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