mRNA_M-pyrifera_M_contig790.18556.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig790.18556.1
Unique NamemRNA_M-pyrifera_M_contig790.18556.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig790.18556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig790contigM-pyrifera_M_contig790:7220..8171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size952
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig790.18556.1prot_M-pyrifera_M_contig790.18556.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig790 7297..8010 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.0616193-UTR-M-pyrifera_M_contig790:7219..72961622816693.0616193-UTR-M-pyrifera_M_contig790:7219..7296Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig790 7220..7296 +
1692278123.3261-UTR-M-pyrifera_M_contig790:7219..72961692278123.3261-UTR-M-pyrifera_M_contig790:7219..7296Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig790 7220..7296 +
1622816693.089931-UTR-M-pyrifera_M_contig790:8010..81711622816693.089931-UTR-M-pyrifera_M_contig790:8010..8171Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig790 8011..8171 +
1692278123.3585281-UTR-M-pyrifera_M_contig790:8010..81711692278123.3585281-UTR-M-pyrifera_M_contig790:8010..8171Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig790 8011..8171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.0747256-CDS-M-pyrifera_M_contig790:7296..80101622816693.0747256-CDS-M-pyrifera_M_contig790:7296..8010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig790 7297..8010 +
1692278123.3424664-CDS-M-pyrifera_M_contig790:7296..80101692278123.3424664-CDS-M-pyrifera_M_contig790:7296..8010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig790 7297..8010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig790.18556.1

>prot_M-pyrifera_M_contig790.18556.1 ID=prot_M-pyrifera_M_contig790.18556.1|Name=mRNA_M-pyrifera_M_contig790.18556.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=238bp
MERPQQVLMRTKVKKPPVYSGDAVMFITEFKLCSRHATAGMVTFGQLRCK
HPGCDKNPSYGKPGTGARLFCYPHAPEGMVSYRAKCNHLGCTKCPTHGNP
GLGTVRFCFSHALEGMVVLWNECKHPGCDNVSSYGKPGTKVALYCAPHAL
EGMLNVIRSRCKKPDCDKFPSYGKPGTTTRLYCAPHALEGMVVLDNKARC
KRPDCDKIPSYGKLGTRTRLYCVRHALEGMVNTRTQR*
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mRNA from alignment at M-pyrifera_M_contig790:7220..8171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig790.18556.1 ID=mRNA_M-pyrifera_M_contig790.18556.1|Name=mRNA_M-pyrifera_M_contig790.18556.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=952bp|location=Sequence derived from alignment at M-pyrifera_M_contig790:7220..8171+ (Macrocystis pyrifera P11B4 male)
TTTCGGCCGAAGATGCGGCCAGGTACGGCGGGAACGCGTCGGGGTACTAT
AGAGGAATTTTTGGAGATGCGAGGGGAATGGAGAGGCCCCAACAGGTCCT
TATGCGGACCAAAGTAAAGAAACCACCGGTTTACTCCGGCGACGCTGTCA
TGTTCATCACCGAGTTCAAGCTCTGTAGCCGGCATGCGACGGCGGGCATG
GTTACCTTCGGCCAACTGCGATGCAAGCACCCCGGCTGCGACAAGAACCC
ATCGTACGGCAAGCCGGGAACCGGAGCGAGGCTGTTCTGTTACCCGCATG
CGCCGGAGGGCATGGTTTCCTATCGCGCAAAATGCAATCACCTCGGGTGC
ACCAAGTGTCCAACACACGGCAATCCGGGACTCGGGACGGTGCGTTTCTG
TTTTTCGCATGCGCTGGAGGGCATGGTTGTTCTCTGGAACGAATGCAAGC
ATCCCGGATGCGACAATGTCTCATCGTACGGCAAGCCGGGAACCAAGGTG
GCACTTTACTGTGCCCCGCATGCGTTGGAGGGCATGCTAAACGTCATCAG
ATCCCGATGCAAGAAGCCCGACTGCGACAAGTTCCCATCGTACGGCAAGC
CGGGAACCACGACGAGGCTGTACTGTGCCCCGCATGCGTTGGAGGGCATG
GTTGTGCTCGACAACAAAGCCCGATGCAAGCGCCCCGACTGCGACAAAAT
CCCCTCGTACGGCAAGCTGGGAACCAGGACGAGGCTGTACTGTGTCCGAC
ATGCGCTGGAGGGCATGGTAAACACCCGCACACAACGATGAGAGCACCCC
CGCCTGCGACAAACTGCAAACAGTAGGAAGAAGGCGCTGGCTGGCGCTTT
AATTTGCCCCGCGCGAGTTAACTTCTAAGCGATAACCAAGGATAACCGAG
ACATTTTGGGTGGAAAATGCCCCCTAAATTGCCTAAAATGGCACATTCTG
CG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig790:7220..8171+

>mRNA_M-pyrifera_M_contig790.18556.1 ID=mRNA_M-pyrifera_M_contig790.18556.1|Name=mRNA_M-pyrifera_M_contig790.18556.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1428bp|location=Sequence derived from alignment at M-pyrifera_M_contig790:7220..8171+ (Macrocystis pyrifera P11B4 male)
ATGGAGAGGCCCCAACAGGTCCTTATGCGGACCAAAGTAAAGAAACCACC
GGTTTACTCCGGCGACGCTGTCATGTTCATCACCGAGTTCAAGCTCTGTA
GCCGGCATGCGACGGCGGGCATGGTTACCTTCGGCCAACTGCGATGCAAG
CACCCCGGCTGCGACAAGAACCCATCGTACGGCAAGCCGGGAACCGGAGC
GAGGCTGTTCTGTTACCCGCATGCGCCGGAGGGCATGGTTTCCTATCGCG
CAAAATGCAATCACCTCGGGTGCACCAAGTGTCCAACACACGGCAATCCG
GGACTCGGGACGGTGCGTTTCTGTTTTTCGCATGCGCTGGAGGGCATGGT
TGTTCTCTGGAACGAATGCAAGCATCCCGGATGCGACAATGTCTCATCGT
ACGGCAAGCCGGGAACCAAGGTGGCACTTTACTGTGCCCCGCATGCGTTG
GAGGGCATGCTAAACGTCATCAGATCCCGATGCAAGAAGCCCGACTGCGA
CAAGTTCCCATCGTACGGCAAGCCGGGAACCACGACGAGGCTGTACTGTG
CCCCGCATGCGTTGGAGGGCATGGTTGTGCTCGACAACAAAGCCCGATGC
AAGCGCCCCGACTGCGACAAAATCCCCTCGTACGGCAAGCTGGGAACCAG
GACGAGGCTGTACTGTGTCCGACATGCGCTGGAGGGCATGGTAAACACCC
GCACACAACGATGAATGGAGAGGCCCCAACAGGTCCTTATGCGGACCAAA
GTAAAGAAACCACCGGTTTACTCCGGCGACGCTGTCATGTTCATCACCGA
GTTCAAGCTCTGTAGCCGGCATGCGACGGCGGGCATGGTTACCTTCGGCC
AACTGCGATGCAAGCACCCCGGCTGCGACAAGAACCCATCGTACGGCAAG
CCGGGAACCGGAGCGAGGCTGTTCTGTTACCCGCATGCGCCGGAGGGCAT
GGTTTCCTATCGCGCAAAATGCAATCACCTCGGGTGCACCAAGTGTCCAA
CACACGGCAATCCGGGACTCGGGACGGTGCGTTTCTGTTTTTCGCATGCG
CTGGAGGGCATGGTTGTTCTCTGGAACGAATGCAAGCATCCCGGATGCGA
CAATGTCTCATCGTACGGCAAGCCGGGAACCAAGGTGGCACTTTACTGTG
CCCCGCATGCGTTGGAGGGCATGCTAAACGTCATCAGATCCCGATGCAAG
AAGCCCGACTGCGACAAGTTCCCATCGTACGGCAAGCCGGGAACCACGAC
GAGGCTGTACTGTGCCCCGCATGCGTTGGAGGGCATGGTTGTGCTCGACA
ACAAAGCCCGATGCAAGCGCCCCGACTGCGACAAAATCCCCTCGTACGGC
AAGCTGGGAACCAGGACGAGGCTGTACTGTGTCCGACATGCGCTGGAGGG
CATGGTAAACACCCGCACACAACGATGA
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