mRNA_M-pyrifera_M_contig78951.18547.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 1.410e-8 Identity = 29/45 (64.44%), Postives = 41/45 (91.11%), Query Frame = 1 Query: 10 VDLFEEMVEMG-ISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAK 141 ++L++EM+E+G ++PDVYTYSSLV+AYA+LG+V AVK LSDM+K Sbjct: 996 LELYDEMMEVGGMAPDVYTYSSLVTAYARLGDVENAVKTLSDMSK 1040
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: M5WR28_PRUPE (Uncharacterized protein n=6 Tax=Prunus TaxID=3754 RepID=M5WR28_PRUPE) HSP 1 Score: 50.4 bits (119), Expect = 1.370e-5 Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 1 QRAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVK-VLSDMAKGGVKPNGFTCSAVM 183 +RA+DLF +MVE+G+SP + TY+ ++ Y K+G + +L DM G + + FTCS V+ Sbjct: 247 ERAIDLFNKMVELGLSPTLVTYNVMLDVYGKMGRSWNKILGLLEDMRSKGFEFDEFTCSTVI 308
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: A0A5J9W8B9_9POAL (Smr domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9W8B9_9POAL) HSP 1 Score: 50.1 bits (118), Expect = 1.870e-5 Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 1 Query: 4 RAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAKGGVKPNGFTCSAVMQV 189 RA+ LF EMVE GI P++ +Y+ ++ K + AV+VL D K G+KP+ C ++ V Sbjct: 437 RALQLFAEMVEAGIEPNIMSYTIVIQCLGKAQRIRHAVEVLEDGLKRGLKPDDRLCGCLLSV 498
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: A0A0E0APY7_9ORYZ (Uncharacterized protein n=3 Tax=Oryza glumipatula TaxID=40148 RepID=A0A0E0APY7_9ORYZ) HSP 1 Score: 49.7 bits (117), Expect = 2.560e-5 Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1 Query: 7 AVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAKGGVKPNGFT 168 A LF++M++ G+SPDV TY+S++SA +K + A VL+ M K G PN T Sbjct: 320 AYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLARMVKNGAMPNRIT 373
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: A0A2P6QT10_ROSCH (Putative tetratricopeptide-like helical domain-containing protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QT10_ROSCH) HSP 1 Score: 48.9 bits (115), Expect = 4.740e-5 Identity = 24/62 (38.71%), Postives = 41/62 (66.13%), Query Frame = 1 Query: 1 QRAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVK-VLSDMAKGGVKPNGFTCSAVM 183 +RA+DLFE+++EMG+SP + TY+ ++ Y K G + +L++M G + + FTCS V+ Sbjct: 242 ERAIDLFEKLMEMGLSPTLVTYNVMLDVYGKKGRSWNKILGLLAEMKSKGFEFDDFTCSTVI 303
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: A0A314UVA6_PRUYE (Pentatricopeptide repeat-containing protein n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314UVA6_PRUYE) HSP 1 Score: 48.5 bits (114), Expect = 6.380e-5 Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 1 QRAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVK-VLSDMAKGGVKPNGFTCSAVM 183 +RA+DLF +MVE+G+SP + TY+ ++ Y K+G + +L +M G + + FTCS V+ Sbjct: 117 ERAIDLFNKMVEIGLSPTLVTYNVMLDVYGKMGRSWYKILGLLEEMRSKGFEFDEFTCSTVI 178
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: UPI0002C311D2 (pentatricopeptide repeat-containing protein At2g18940, chloroplastic n=2 Tax=Rosoideae TaxID=171638 RepID=UPI0002C311D2) HSP 1 Score: 48.5 bits (114), Expect = 6.570e-5 Identity = 23/62 (37.10%), Postives = 41/62 (66.13%), Query Frame = 1 Query: 1 QRAVDLFEEMVEMGISPDVYTYSSLVSAYAKLGEVAAAVK-VLSDMAKGGVKPNGFTCSAVM 183 +RA+D+FE+++EMG+SP + TY+ ++ Y K G + +L +M G++ + FTCS V+ Sbjct: 242 ERAIDMFEKLMEMGLSPTLVTYNVMLDVYGKKGRSWNKILGLLDEMKSKGLEFDDFTCSTVI 303 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig78951.18547.1 >prot_M-pyrifera_M_contig78951.18547.1 ID=prot_M-pyrifera_M_contig78951.18547.1|Name=mRNA_M-pyrifera_M_contig78951.18547.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp MVEMGISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAKGGVKPNGFTCSAback to top mRNA from alignment at M-pyrifera_M_contig78951:408..599+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig78951.18547.1 ID=mRNA_M-pyrifera_M_contig78951.18547.1|Name=mRNA_M-pyrifera_M_contig78951.18547.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig78951:408..599+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig78951:408..599+ >mRNA_M-pyrifera_M_contig78951.18547.1 ID=mRNA_M-pyrifera_M_contig78951.18547.1|Name=mRNA_M-pyrifera_M_contig78951.18547.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig78951:408..599+ (Macrocystis pyrifera P11B4 male)back to top |