mRNA_M-pyrifera_M_contig78916.18538.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78916.18538.1
Unique NamemRNA_M-pyrifera_M_contig78916.18538.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: A0A0H2R6K7_9AGAM (SET domain-containing protein n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2R6K7_9AGAM)

HSP 1 Score: 62.0 bits (149), Expect = 5.380e-8
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1
Query:  217 GHGVYLAPALFNHSCAPNVRLRTNAAGPLLLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESFRFHCACARCLEDE 495
            GH +Y+AP+L NHSC PN R      G  ++    Q + KG+ +T+SY+D  +  D+              RR  LM S+RF+C+C  C  D+
Sbjct:  557 GHALYVAPSLMNHSCMPNARREF--IGTAIVIRTIQDLKKGEEVTVSYIDAQVSYDE--------------RRFRLMNSWRFNCSCGVCEADD 633          
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: A0A813L9Q5_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L9Q5_POLGL)

HSP 1 Score: 60.5 bits (145), Expect = 1.500e-7
Identity = 42/132 (31.82%), Postives = 61/132 (46.21%), Query Frame = 1
Query:   94 RSLQAYFRHL--EVTDGDLLLEMLCRNRRNGFCFGNGVHEEPQGHGVYLAPALFNHSCAPNVRLRTNAAGPLLLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESFRFHCACARC 483
            R+ QA  R L  ++ D D L  +L     N F F     +EP G+  Y  P+  +HSC P+      A     +  A +A+A G  +T+SYL+  LL+                RR +L E+ +F CAC RC
Sbjct:  130 RATQAIARQLVPQLRDVDKLERLLQAWIHNAFDFS----DEPSGYATYYFPSFMSHSCYPSAFWHYGADAERYVLRARRAIAAGDEVTVSYLEETLLLSHVQE-----------RRWDLFETKQFWCACERC 246          
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: A0A2C6L766_9APIC (Histone lysine set n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6L766_9APIC)

HSP 1 Score: 58.9 bits (141), Expect = 6.400e-7
Identity = 41/122 (33.61%), Postives = 58/122 (47.54%), Query Frame = 1
Query:  118 HLEVTDGDLLLEMLCRNRRNGFCFGNGVHEEPQGHGVYLAPALFNHSCAPNVRLRTNAAGPLLLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESFRFHCACARC 483
            H  V D +L+L++   N     CF    H++P G+ +Y  P+  +HSC PN    T+     +L   A  + KG  +TLSYL    L+           R    RRK L+E+  F CAC RC
Sbjct:  162 HTTVQDLELMLQIWIHN-----CFEQ--HDDPIGYVIYFMPSFSSHSCLPNTLWFTDEKDRFVLRSRAH-LKKGDEVTLSYLSEEDLM-----------RPAKERRKVLLETKDFFCACERC 264          
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: A0A383W211_TETOB (SET domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W211_TETOB)

HSP 1 Score: 56.6 bits (135), Expect = 3.820e-6
Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  217 GH-GVYLAPALFNHSCAPNVRLRTNAAGPLLLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESFRFHCACARC 483
            GH GV+ A A+ NH+C PN        G  L+  AA+ +A GQ +TLSYL           P+L A    A+R++EL + + F C CARC
Sbjct:  533 GHLGVWPAAAMINHACCPNAHALL--IGDRLVVRAAEDIAAGQQVTLSYL----------GPQLFA--PAAVRQEELRQQWGFDCGCARC 608          
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: A0A0H2R7W9_9AGAM (SET domain-containing protein n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2R7W9_9AGAM)

HSP 1 Score: 56.2 bits (134), Expect = 5.130e-6
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 1
Query:  205 EEPQGHGVYLAPALFNHSCAPNVRLRTNAAGPLLLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESFRFHCACARCLEDE 495
            E     G+Y+AP+L NHSCAP  R      G      A Q + KG+ LTL+Y++  +  D+              RR  +M+S+RF C C  C  D+
Sbjct:  492 ESDSWKGLYVAPSLLNHSCAPTARREF--IGNAFALRAIQDMKKGEELTLTYIEPHVSYDE--------------RRFRMMKSWRFSCECIVCQADD 572          
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: E1ZCG6_CHLVA (SET domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZCG6_CHLVA)

HSP 1 Score: 55.8 bits (133), Expect = 5.800e-6
Identity = 31/95 (32.63%), Postives = 48/95 (50.53%), Query Frame = 1
Query:  217 GHGVYLAPALFNHSCAPNVRLRTNAAGPLLLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESFRFHCACARCLEDEVA 501
            G   YL  +L NHSC P++ +       +  F AA+ +A+G+ LT+SY+D G              +  A RR+ L  ++ F C C RC+E+  A
Sbjct:  300 GSAAYLLASLLNHSCEPSLGVSFPRNNAVAAFTAARHIARGEQLTVSYVDAG--------------QGLAARRQALAWAYGFTCRCPRCVEEAAA 380          
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: A0A0G4FR69_VITBC (SET domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FR69_VITBC)

HSP 1 Score: 54.7 bits (130), Expect = 1.610e-5
Identity = 34/110 (30.91%), Postives = 53/110 (48.18%), Query Frame = 1
Query:  181 FCFGNGVHEEPQGHGVYLAPALFNHSCAPNVRLRTNAAGPLLLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESF--RFHCACARCLEDEVAP 504
            FC+     ++ +  G++   + FNHSC+PNV   +      +LF   + V KG+PLT+SY++   L +              LRR  L E+   RF C C +C+E    P
Sbjct:  234 FCYSKAGFDKMEAVGLFFLASFFNHSCSPNVCRYS--ISEWMLFHTIKPVKKGEPLTISYVEEEHLEEPLW-----------LRRAVLAENGYQRFKCVCPKCVEQRDDP 330          
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: A0A812LEA2_SYMMI (Pgl protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812LEA2_SYMMI)

HSP 1 Score: 54.7 bits (130), Expect = 1.870e-5
Identity = 37/124 (29.84%), Postives = 58/124 (46.77%), Query Frame = 1
Query:  142 LLLEMLCRNRRNGFCFGNGVHEEPQGHGVYLAPALFNHSCAPNVRLRTNAA-GPL---------LLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESFRFHCACARC 483
            L+LE+ C    +G+             G++   A  NHSCAPN  +R +AA GP          + F A + ++KG+ +T+SY++ GLL     +            R+  + S+ F CAC RC
Sbjct:  636 LILEVCCSGLPSGWA------------GLFEYVAYVNHSCAPNAAIRASAASGPSRQESCCQYRIRFVALRPISKGEEITISYIEEGLLKQPVRS------------RQRYLRSWGFSCACVRC 735          
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: A0A1Q9CKV6_SYMMI (6-phosphogluconolactonase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CKV6_SYMMI)

HSP 1 Score: 54.7 bits (130), Expect = 1.960e-5
Identity = 37/124 (29.84%), Postives = 58/124 (46.77%), Query Frame = 1
Query:  142 LLLEMLCRNRRNGFCFGNGVHEEPQGHGVYLAPALFNHSCAPNVRLRTNAA-GPL---------LLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESFRFHCACARC 483
            L+LE+ C    +G+             G++   A  NHSCAPN  +R +AA GP          + F A + ++KG+ +T+SY++ GLL     +            R+  + S+ F CAC RC
Sbjct: 3069 LILEVCCSGLPSGWA------------GLFEYVAYVNHSCAPNAAIRASAASGPSRQESCCQYRIRFVALRPISKGEEITISYIEEGLLKQPVRS------------RQRYLRSWGFSCACVRC 3168          
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Match: A0A553PDN0_TIGCA (MYND-type domain-containing protein (Fragment) n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PDN0_TIGCA)

HSP 1 Score: 53.5 bits (127), Expect = 3.560e-5
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  202 HEEPQGHGVYLAPALFNHSCAPNVRL----RTNAAGPLLLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELMESFRFHCACARCL 486
            H   +G G+YLAP++ +HSCAPN  +    RT     L+  E+     K   + +SY+D   L++ S            +R+K+L+E ++FHC C RC+
Sbjct:  132 HRSIKGWGLYLAPSILDHSCAPNATVSFLGRTIFVRTLVDMESP---LKWNEVRISYID---LMETSE-----------MRQKKLLEQYQFHCDCPRCV 213          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78916.18538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A0H2R6K7_9AGAM5.380e-835.48SET domain-containing protein n=1 Tax=Schizopora p... [more]
A0A813L9Q5_POLGL1.500e-731.82Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A2C6L766_9APIC6.400e-733.61Histone lysine set n=1 Tax=Cystoisospora suis TaxI... [more]
A0A383W211_TETOB3.820e-640.00SET domain-containing protein n=1 Tax=Tetradesmus ... [more]
A0A0H2R7W9_9AGAM5.130e-634.02SET domain-containing protein n=1 Tax=Schizopora p... [more]
E1ZCG6_CHLVA5.800e-632.63SET domain-containing protein n=1 Tax=Chlorella va... [more]
A0A0G4FR69_VITBC1.610e-530.91SET domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A812LEA2_SYMMI1.870e-529.84Pgl protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A1Q9CKV6_SYMMI1.960e-529.846-phosphogluconolactonase n=1 Tax=Symbiodinium mic... [more]
A0A553PDN0_TIGCA3.560e-533.33MYND-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78916contigM-pyrifera_M_contig78916:19..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.4
Seed ortholog evalue7.8e-09
Seed eggNOG ortholog140110.NechaP123247
KEGG koko:K00598,ko:K11426
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
EggNOG OGs1FM95@110618,21EKC@147550,3A9H2@33154,3P7EK@4751,3RMMB@4890,3TUJ1@5125,COG2940@1,KOG2084@2759
EC2.1.1.144
COG Functional cat.B
Best tax levelNectriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons3
Model size537
Cds size537
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78916.18538.1prot_M-pyrifera_M_contig78916.18538.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78916 19..684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.216965-CDS-M-pyrifera_M_contig78916:18..1371622816692.216965-CDS-M-pyrifera_M_contig78916:18..137Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78916 19..137 +
1692278122.876088-CDS-M-pyrifera_M_contig78916:18..1371692278122.876088-CDS-M-pyrifera_M_contig78916:18..137Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78916 19..137 +
1622816692.2299182-CDS-M-pyrifera_M_contig78916:200..3601622816692.2299182-CDS-M-pyrifera_M_contig78916:200..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78916 201..360 +
1692278122.8963053-CDS-M-pyrifera_M_contig78916:200..3601692278122.8963053-CDS-M-pyrifera_M_contig78916:200..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78916 201..360 +
1622816692.2409286-CDS-M-pyrifera_M_contig78916:426..6841622816692.2409286-CDS-M-pyrifera_M_contig78916:426..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78916 427..684 +
1692278122.9134517-CDS-M-pyrifera_M_contig78916:426..6841692278122.9134517-CDS-M-pyrifera_M_contig78916:426..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78916 427..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78916.18538.1

>prot_M-pyrifera_M_contig78916.18538.1 ID=prot_M-pyrifera_M_contig78916.18538.1|Name=mRNA_M-pyrifera_M_contig78916.18538.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
RFEDYLLLVARPEDFPEEEVASLRYWIIDYLRSLQAYFRHLEVTDGDLLL
EMLCRNRRNGFCFGNGVHEEPQGHGVYLAPALFNHSCAPNVRLRTNAAGP
LLLFEAAQAVAKGQPLTLSYLDNGLLVDDSAAPRLSARRDCALRRKELME
SFRFHCACARCLEDEVAPEEEEEEEEEVQ
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mRNA from alignment at M-pyrifera_M_contig78916:19..684+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78916.18538.1 ID=mRNA_M-pyrifera_M_contig78916.18538.1|Name=mRNA_M-pyrifera_M_contig78916.18538.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig78916:19..684+ (Macrocystis pyrifera P11B4 male)
CGGTTCGAGGACTACCTGCTGCTCGTGGCGCGGCCGGAGGACTTTCCCGA GGAGGAGGTGGCGTCGCTGCGCTACTGGATCATAGACTACCTGCGCAGCC TGCAGGCCTACTTCCGCCAGTGCATGGAGGGCGGCCTCGCCCGCGCGGTG GACGCCAAGCGCCGTGCGGCGCAGGAGACGAGCCTGGAGGTGACCGACGG CGACCTGCTGCTGGAGATGCTGTGCAGGAACCGGCGCAACGGCTTCTGCT TTGGCAACGGCGTGCACGAGGAGCCGCAAGGCCACGGCGTCTATCTGGCG CCGGCGCTCTTCAACCACAGCTGTGCGCCCAACGTGCGCCTCGTGACGCT CGGCCCCGAGCAAGAGGCAGCCGCCGACCTCCCGCTGCCAGACGGCGGCA GCAGCAAGCGCACCAACGCCGCAGGCCCCCTCCTCCTCTTCGAGGCCGCC CAGGCGGTGGCCAAGGGCCAGCCGCTGACGCTCTCCTACCTCGACAACGG CCTGCTGGTCGACGACAGCGCCGCGCCGCGCCTCTCCGCCAGGCGTGACT GCGCGCTCCGCAGGAAGGAGCTCATGGAGTCCTTTCGCTTCCACTGCGCT TGCGCCCGCTGCCTCGAGGACGAGGTCGCCCCAGAGGAAGAGGAAGAGGA GGAAGAGGAGGTGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78916:19..684+

>mRNA_M-pyrifera_M_contig78916.18538.1 ID=mRNA_M-pyrifera_M_contig78916.18538.1|Name=mRNA_M-pyrifera_M_contig78916.18538.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig78916:19..684+ (Macrocystis pyrifera P11B4 male)
CGGTTCGAGGACTACCTGCTGCTCGTGGCGCGGCCGGAGGACTTTCCCGA
GGAGGAGGTGGCGTCGCTGCGCTACTGGATCATAGACTACCTGCGCAGCC
TGCAGGCCTACTTCCGCCACGGTTCGAGGACTACCTGCTGCTCGTGGCGC
GGCCGGAGGACTTTCCCGAGGAGGAGGTGGCGTCGCTGCGCTACTGGATC
ATAGACTACCTGCGCAGCCTGCAGGCCTACTTCCGCCACCTGGAGGTGAC
CGACGGCGACCTGCTGCTGGAGATGCTGTGCAGGAACCGGCGCAACGGCT
TCTGCTTTGGCAACGGCGTGCACGAGGAGCCGCAAGGCCACGGCGTCTAT
CTGGCGCCGGCGCTCTTCAACCACAGCTGTGCGCCCAACGTGCGCCTCCC
TGGAGGTGACCGACGGCGACCTGCTGCTGGAGATGCTGTGCAGGAACCGG
CGCAACGGCTTCTGCTTTGGCAACGGCGTGCACGAGGAGCCGCAAGGCCA
CGGCGTCTATCTGGCGCCGGCGCTCTTCAACCACAGCTGTGCGCCCAACG
TGCGCCTCCGCACCAACGCCGCAGGCCCCCTCCTCCTCTTCGAGGCCGCC
CAGGCGGTGGCCAAGGGCCAGCCGCTGACGCTCTCCTACCTCGACAACGG
CCTGCTGGTCGACGACAGCGCCGCGCCGCGCCTCTCCGCCAGGCGTGACT
GCGCGCTCCGCAGGAAGGAGCTCATGGAGTCCTTTCGCTTCCACTGCGCT
TGCGCCCGCTGCCTCGAGGACGAGGTCGCCCCAGAGGAAGAGGAAGAGGA
GGAAGAGGAGGTGCAACGCACCAACGCCGCAGGCCCCCTCCTCCTCTTCG
AGGCCGCCCAGGCGGTGGCCAAGGGCCAGCCGCTGACGCTCTCCTACCTC
GACAACGGCCTGCTGGTCGACGACAGCGCCGCGCCGCGCCTCTCCGCCAG
GCGTGACTGCGCGCTCCGCAGGAAGGAGCTCATGGAGTCCTTTCGCTTCC
ACTGCGCTTGCGCCCGCTGCCTCGAGGACGAGGTCGCCCCAGAGGAAGAG
GAAGAGGAGGAAGAGGAGGTGCAA
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