mRNA_M-pyrifera_M_contig78880.18528.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig78880.18528.1
Unique Name	mRNA_M-pyrifera_M_contig78880.18528.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: A0A5C5Y104_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula solitaria TaxID=2527987 RepID=A0A5C5Y104_9BACT)

HSP 1 Score: 116 bits (290), Expect = 1.030e-25
Identity = 66/96 (68.75%), Postives = 84/96 (87.50%), Query Frame = 1

Query:    1 IGDGQLSKAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKELEEESP 288
            I  GQLSKA+ +Q++AT EL+ +LKLL++EDRSSRIRDEKKRI+++IKQLRLTERNERSVRARTENGVEM EV KEQ+ I++RAE L++E  ++ P
Sbjct:  114 IASGQLSKALEEQETATGELEGLLKLLLTEDRSSRIRDEKKRIAEMIKQLRLTERNERSVRARTENGVEMEEVLKEQEEISKRAEALQEEFRQDDP 209

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: A0A0J1BDF2_RHOIS (Putative signal peptide and transmembrane protein n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1BDF2_RHOIS)

HSP 1 Score: 100 bits (250), Expect = 2.230e-20
Identity = 67/96 (69.79%), Postives = 68/96 (70.83%), Query Frame = 1

Query:    1 IGDGQLSKAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKELEEESP 288
            IGDGQLSKAMTDQKSATDELQSILKLLMSEDRSSR                           RTENGVEMSEVEKEQKAIAERAEQLRKELE+E P
Sbjct:  122 IGDGQLSKAMTDQKSATDELQSILKLLMSEDRSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXRTENGVEMSEVEKEQKAIAERAEQLRKELEDELP 217

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: A0A2G1WCN3_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1WCN3_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 2.400e-17
Identity = 63/95 (66.32%), Postives = 64/95 (67.37%), Query Frame = 1

Query:    1 IGDGQLSKAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKELEEES 285
            IGDGQLSKAMTDQKSATDELQSILKLLMSEDR                               TENGVEMSEVEKEQKAIAERAE+LRKELEEES
Sbjct:  121 IGDGQLSKAMTDQKSATDELQSILKLLMSEDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTENGVEMSEVEKEQKAIAERAEELRKELEEES 215

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: A0A5C6E0I2_9BACT (Uncharacterized protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6E0I2_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 2.760e-17
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 1

Query:   22 KAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKELEEESP 288
            +A+ +Q +AT  L+ +L+LLMSEDRS RIRDEK+RI++LIK L+  ER ERS RARTENG +M EV+KEQ+AI +R+E LR EL E+ P
Sbjct:   99 EAVDNQANATQGLEGLLQLLMSEDRSKRIRDEKERIANLIKDLKRVERAERSTRARTENGADMEEVQKEQEAITDRSESLRDELAEKDP 187

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: A0A5C6FH00_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6FH00_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 5.480e-17
Identity = 51/90 (56.67%), Postives = 70/90 (77.78%), Query Frame = 1

Query:   13 QLSKAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKELEEE 282
            +  KA+ +Q +AT+EL S+LKLL+SEDRS RIRDEK+R + L+K L+    N+RS RARTENG +M EVE EQKA+ E++E+L+  L+EE
Sbjct:  112 EFQKAVDEQSAATEELASLLKLLLSEDRSKRIRDEKERFTKLVKDLKRNLNNQRSTRARTENGADMKEVEAEQKAVTEKSEELKSRLDEE 201

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: A0A5C6ELG5_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6ELG5_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 7.370e-17
Identity = 51/90 (56.67%), Postives = 72/90 (80.00%), Query Frame = 1

Query:   13 QLSKAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKELEEE 282
            +  KA+  Q +AT+EL S++KLL+SEDRS RIRDEK+R + LIK L+    N+RS RARTENG +++EVEKEQKA+ E++++L K++EEE
Sbjct:   89 EFQKAVDAQTTATEELASLMKLLLSEDRSKRIRDEKERYTKLIKDLKRNLNNQRSTRARTENGADINEVEKEQKAVTEKSQELNKQMEEE 178

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: UPI001E5CEC57 (hypothetical protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E5CEC57)

HSP 1 Score: 89.0 bits (219), Expect = 2.570e-16
Identity = 60/95 (63.16%), Postives = 67/95 (70.53%), Query Frame = 1

Query:    1 IGDGQLSKAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKELEEES 285
            I DGQLSKAMTDQKSAT ELQSIL+LLMSEDRS+RIR                          TENGVEMSEV+KEQ+AIAERAE+LRKELE+E+
Sbjct:   87 IEDGQLSKAMTDQKSATKELQSILQLLMSEDRSTRIRXXXXXXXXXXXXXXXXXXXXXXXXXXTENGVEMSEVQKEQEAIAERAEELRKELEDEN 181

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: A0A1Z9QRT8_9PLAN (Uncharacterized protein (Fragment) n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A1Z9QRT8_9PLAN)

HSP 1 Score: 84.0 bits (206), Expect = 1.980e-15
Identity = 48/91 (52.75%), Postives = 70/91 (76.92%), Query Frame = 1

Query:   13 QLSKAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKELEEES 285
            +  KA+ +Q++AT EL  +LKLL+SEDRS RIRDEK+R + LIK L+    N+RS RARTENG ++ +VE EQK++ +R+E+L+  L+EE+
Sbjct:  135 EFQKAVENQEAATRELGDLLKLLLSEDRSKRIRDEKERYTKLIKDLKRNLNNQRSARARTENGADLEQVEAEQKSVTDRSEELKDRLQEEN 225

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: A0A358N256_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A358N256_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 1.980e-15
Identity = 47/91 (51.65%), Postives = 71/91 (78.02%), Query Frame = 1

Query:   13 QLSKAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKELEEES 285
            +  KA+ +Q++AT EL  +LKLL+SEDRS RIRDEK+R + LIK L+    N+RS RARTENG ++ EV+ EQK++ +R+E+L+ +L++E+
Sbjct:  141 EFQKAVENQEAATKELGDLLKLLLSEDRSKRIRDEKERYTKLIKDLKRNLNNQRSARARTENGADLKEVQGEQKSVTDRSEELKNQLQDEN 231

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BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Match: UPI0013D8FF62 (hypothetical protein n=1 Tax=Candidatus Laterigemmans baculatus TaxID=2770505 RepID=UPI0013D8FF62)

HSP 1 Score: 85.9 bits (211), Expect = 2.960e-15
Identity = 48/84 (57.14%), Postives = 67/84 (79.76%), Query Frame = 1

Query:   22 KAMTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERSVRARTENGVEMSEVEKEQKAIAERAEQLRKEL 273
            +A++DQK+A  EL S+LKLLM+EDR  RIR+EK+R++  IK L+  ER+ER +RAR ENG E+SE+E EQK++ ERA++L  EL
Sbjct:  147 RAISDQKAAQQELTSLLKLLMTEDRPQRIREEKERVTRWIKDLKRLERSERGIRARAENGAELSEIESEQKSVTERAKELEAEL 230

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig78880.18528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A5C5Y104_9BACT	1.030e-25	68.75	Uncharacterized protein n=1 Tax=Rhodopirellula sol...	[more]
A0A0J1BDF2_RHOIS	2.230e-20	69.79	Putative signal peptide and transmembrane protein ...	[more]
A0A2G1WCN3_9BACT	2.400e-17	66.32	Uncharacterized protein n=1 Tax=Rhodopirellula bah...	[more]
A0A5C6E0I2_9BACT	2.760e-17	60.67	Uncharacterized protein n=1 Tax=Novipirellula aure...	[more]
A0A5C6FH00_9BACT	5.480e-17	56.67	Uncharacterized protein n=1 Tax=Rubripirellula ten...	[more]
A0A5C6ELG5_9BACT	7.370e-17	56.67	Uncharacterized protein n=1 Tax=Rubripirellula ret...	[more]
UPI001E5CEC57	2.570e-16	63.16	hypothetical protein n=2 Tax=unclassified Rhodopir...	[more]
A0A1Z9QRT8_9PLAN	1.980e-15	52.75	Uncharacterized protein (Fragment) n=2 Tax=Plancto...	[more]
A0A358N256_9BACT	1.980e-15	51.65	Uncharacterized protein (Fragment) n=1 Tax=Rhodopi...	[more]
UPI0013D8FF62	2.960e-15	57.14	hypothetical protein n=1 Tax=Candidatus Laterigemm...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig78880	contig	M-pyrifera_M_contig78880:2..892 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	65.5
Seed ortholog evalue	4.3e-08
Seed eggNOG ortholog	595460.RRSWK_06610
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Non-essential cell division protein that could be required for efficient cell constriction
EggNOG OGs	2IYA2@203682,COG3147@1,COG3147@2
COG Functional cat.	S
Best tax level	Planctomycetes
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	819
Cds size	792
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig78880.18528.1	prot_M-pyrifera_M_contig78880.18528.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig78880 29..892 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816691.6736615-UTR-M-pyrifera_M_contig78880:1..28	1622816691.6736615-UTR-M-pyrifera_M_contig78880:1..28	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig78880 2..28 +
1692278122.5214949-UTR-M-pyrifera_M_contig78880:1..28	1692278122.5214949-UTR-M-pyrifera_M_contig78880:1..28	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig78880 2..28 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816691.688093-CDS-M-pyrifera_M_contig78880:28..620	1622816691.688093-CDS-M-pyrifera_M_contig78880:28..620	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig78880 29..620 +
1692278122.53345-CDS-M-pyrifera_M_contig78880:28..620	1692278122.53345-CDS-M-pyrifera_M_contig78880:28..620	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig78880 29..620 +
1622816691.6982267-CDS-M-pyrifera_M_contig78880:692..892	1622816691.6982267-CDS-M-pyrifera_M_contig78880:692..892	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig78880 693..892 +
1692278122.5516531-CDS-M-pyrifera_M_contig78880:692..892	1692278122.5516531-CDS-M-pyrifera_M_contig78880:692..892	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig78880 693..892 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig78880:2..892+
coding sequence from alignment at M-pyrifera_M_contig78880:2..892+

protein sequence of mRNA_M-pyrifera_M_contig78880.18528.1

>prot_M-pyrifera_M_contig78880.18528.1 ID=prot_M-pyrifera_M_contig78880.18528.1|Name=mRNA_M-pyrifera_M_contig78880.18528.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=264bp
MTDQKSATDELQSILKLLMSEDRSSRIRDEKKRISDLIKQLRLTERNERS
VRARTENGVEMSEVEKEQKAIAERAEQLRKELEEESPETDSAPSDAEASQ
SESSEKDSNEQGSESESKNNSDEASGEKQDGESQSDEQTPGEPKESGDEQ
SPKKESSGDQSSQSGEENKGSEQQPSGGDEPQDGSEKSDQPEGEPSEDAP
KQSGEQQSGQQQSSSQQQPPQPQSPQQQAEEQLQRAIERMQEAQDKLAQN
ERQEATEQQRQAEE

mRNA from alignment at M-pyrifera_M_contig78880:2..892+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig78880.18528.1 ID=mRNA_M-pyrifera_M_contig78880.18528.1|Name=mRNA_M-pyrifera_M_contig78880.18528.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=891bp|location=Sequence derived from alignment at M-pyrifera_M_contig78880:2..892+ (Macrocystis pyrifera P11B4 male)
ATTGGCGACGGCCAGCTGTCCAAAGCGATGACAGACCAGAAATCCGCCAC
CGATGAACTGCAGTCGATCTTGAAACTGCTGATGAGCGAAGATCGCAGTT
CGCGAATTCGTGACGAGAAGAAACGCATCTCCGATCTGATCAAACAGCTT
CGCCTGACCGAACGCAATGAACGCAGCGTTCGGGCTCGAACCGAAAACGG
TGTCGAGATGAGCGAAGTCGAAAAGGAGCAGAAAGCGATCGCAGAACGCG
CCGAACAGCTCCGCAAAGAACTCGAAGAAGAATCACCTGAAACAGATAGC
GCCCCATCCGACGCCGAAGCATCCCAATCCGAATCGTCCGAGAAGGATTC
GAACGAGCAAGGATCCGAAAGCGAATCGAAGAACAACAGCGACGAAGCCT
CGGGTGAAAAACAAGACGGCGAAAGCCAATCTGACGAACAGACGCCCGGC
GAGCCAAAAGAGTCCGGCGACGAACAATCGCCCAAAAAGGAAAGCAGCGG
CGATCAATCCAGCCAAAGTGGCGAAGAAAACAAAGGCTCGGAACAACAAC
CCAGTGGCGGTGACGAACCACAGGATGGGTCGGAGAAAAGCGACCAACCC
GAGGGGGAACCGTCGGAAGGTGAAAAGTCCGACGGTGAAATGAAGTCGTC
GGAATCACCCGAGTCCGAATCTGGTGAATCGCAATCCCAAGACGCTCCCA
AGCAATCTGGCGAACAACAATCGGGCCAGCAGCAGTCGTCTTCGCAACAA
CAGCCACCCCAGCCGCAGTCACCTCAGCAACAAGCCGAGGAGCAACTGCA
GCGTGCGATCGAACGCATGCAAGAGGCGCAAGACAAGCTCGCTCAAAACG
AACGACAGGAGGCAACTGAACAACAACGTCAGGCCGAAGAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig78880:2..892+

>mRNA_M-pyrifera_M_contig78880.18528.1 ID=mRNA_M-pyrifera_M_contig78880.18528.1|Name=mRNA_M-pyrifera_M_contig78880.18528.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1584bp|location=Sequence derived from alignment at M-pyrifera_M_contig78880:2..892+ (Macrocystis pyrifera P11B4 male)
ATGACAGACCAGAAATCCGCCACCGATGAACTGCAGTCGATCTTGAAACT
GCTGATGAGCGAAGATCGCAGTTCGCGAATTCGTGACGAGAAGAAACGCA
TCTCCGATCTGATCAAACAGCTTCGCCTGACCGAACGCAATGAACGCAGC
GTTCGGGCTCGAACCGAAAACGGTGTCGAGATGAGCGAAGTCGAAAAGGA
GCAGAAAGCGATCGCAGAACGCGCCGAACAGCTCCGCAAAGAACTCGAAG
AAGAATCACCTGAAACAGATAGCGCCCCATCCGACGCCGAAGCATCCCAA
TCCGAATCGTCCGAGAAGGATTCGAACGAGCAAGGATCCGAAAGCGAATC
GAAGAACAACAGCGACGAAGCCTCGGGTGAAAAACAAGACGGCGAAAGCC
AATCTGACGAACAGACGCCCGGCGAGCCAAAAGAGTCCGGCGACGAACAA
TCGCCCAAAAAGGAAAGCAGCGGCGATCAATCCAGCCAAAGTGGCGAAGA
AAACAAAGGCTCGGAACAACAACCCAGTGGCGGTGACGAACCACAGGATG
GGTCGGAGAAAAGCGACCAACCCGAGGGGGAACCGTCGGAAGATGACAGA
CCAGAAATCCGCCACCGATGAACTGCAGTCGATCTTGAAACTGCTGATGA
GCGAAGATCGCAGTTCGCGAATTCGTGACGAGAAGAAACGCATCTCCGAT
CTGATCAAACAGCTTCGCCTGACCGAACGCAATGAACGCAGCGTTCGGGC
TCGAACCGAAAACGGTGTCGAGATGAGCGAAGTCGAAAAGGAGCAGAAAG
CGATCGCAGAACGCGCCGAACAGCTCCGCAAAGAACTCGAAGAAGAATCA
CCTGAAACAGATAGCGCCCCATCCGACGCCGAAGCATCCCAATCCGAATC
GTCCGAGAAGGATTCGAACGAGCAAGGATCCGAAAGCGAATCGAAGAACA
ACAGCGACGAAGCCTCGGGTGAAAAACAAGACGGCGAAAGCCAATCTGAC
GAACAGACGCCCGGCGAGCCAAAAGAGTCCGGCGACGAACAATCGCCCAA
AAAGGAAAGCAGCGGCGATCAATCCAGCCAAAGTGGCGAAGAAAACAAAG
GCTCGGAACAACAACCCAGTGGCGGTGACGAACCACAGGATGGGTCGGAG
AAAAGCGACCAACCCGAGGGGGAACCGTCGGAAGACGCTCCCAAGCAATC
TGGCGAACAACAATCGGGCCAGCAGCAGTCGTCTTCGCAACAACAGCCAC
CCCAGCCGCAGTCACCTCAGCAACAAGCCGAGGAGCAACTGCAGCGTGCG
ATCGAACGCATGCAAGAGGCGCAAGACAAGCTCGCTCAAAACGAACGACA
GGAGGCAACTGAACAACAACGTCAGGCCGAAGAGACGCTCCCAAGCAATC
TGGCGAACAACAATCGGGCCAGCAGCAGTCGTCTTCGCAACAACAGCCAC
CCCAGCCGCAGTCACCTCAGCAACAAGCCGAGGAGCAACTGCAGCGTGCG
ATCGAACGCATGCAAGAGGCGCAAGACAAGCTCGCTCAAAACGAACGACA
GGAGGCAACTGAACAACAACGTCAGGCCGAAGAG