mRNA_M-pyrifera_M_contig78833.18520.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78833.18520.1
Unique NamemRNA_M-pyrifera_M_contig78833.18520.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78833.18520.1 vs. uniprot
Match: A0A2E7KC48_9PLAN (Exonuclease n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KC48_9PLAN)

HSP 1 Score: 104 bits (260), Expect = 7.040e-27
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 LVSRLRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID 150
            LVSRLRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID
Sbjct:  157 LVSRLRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID 206
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BLAST of mRNA_M-pyrifera_M_contig78833.18520.1 vs. uniprot
Match: A0A518A3B8_9PLAN (Putative HTH-type transcriptional regulator YdfH n=5 Tax=Gimesia TaxID=1649453 RepID=A0A518A3B8_9PLAN)

HSP 1 Score: 103 bits (257), Expect = 1.990e-26
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 LVSRLRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID 150
            LVSR+RRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID
Sbjct:  157 LVSRVRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID 206
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BLAST of mRNA_M-pyrifera_M_contig78833.18520.1 vs. uniprot
Match: A6CBF7_9PLAN (Exonuclease n=11 Tax=Planctomycetaceae TaxID=126 RepID=A6CBF7_9PLAN)

HSP 1 Score: 98.2 bits (243), Expect = 2.530e-24
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 LVSRLRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID 150
            LVSRLRRHFL GFQKPNDPMKVYYEH+AIV+MFR+GKLEPS+QALISNID
Sbjct:  157 LVSRLRRHFLAGFQKPNDPMKVYYEHVAIVAMFRTGKLEPSLQALISNID 206
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BLAST of mRNA_M-pyrifera_M_contig78833.18520.1 vs. uniprot
Match: A0A518I9F6_9PLAN (Putative HTH-type transcriptional regulator YdfH n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I9F6_9PLAN)

HSP 1 Score: 93.6 bits (231), Expect = 1.600e-22
Identity = 42/50 (84.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 LVSRLRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID 150
            LVSRLRRHFLEGFQ+P+DPMK+YYEH+AIV+MFR+GKLE SIQAL+SNID
Sbjct:  157 LVSRLRRHFLEGFQQPHDPMKIYYEHVAIVAMFRTGKLEVSIQALVSNID 206
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BLAST of mRNA_M-pyrifera_M_contig78833.18520.1 vs. uniprot
Match: A0A517WXB9_9PLAN (Putative HTH-type transcriptional regulator YdfH n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WXB9_9PLAN)

HSP 1 Score: 87.0 bits (214), Expect = 5.580e-20
Identity = 38/50 (76.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 LVSRLRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID 150
            LVSRLRRHFLEGFQKP DPM++YYEH+AIV+MFRS KL+ ++Q LI+NID
Sbjct:  157 LVSRLRRHFLEGFQKPGDPMRIYYEHVAIVAMFRSRKLDAAVQVLIANID 206
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BLAST of mRNA_M-pyrifera_M_contig78833.18520.1 vs. uniprot
Match: A0A381W019_9ZZZZ (HTH gntR-type domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381W019_9ZZZZ)

HSP 1 Score: 64.3 bits (155), Expect = 2.790e-11
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 LVSRLRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID 150
            L+SR++ HF+  + K  DPM++Y+EH AI SMFR+GKL+ +IQ L SNI+
Sbjct:  150 LISRVKGHFMRNYHKYRDPMEIYFEHEAIFSMFRTGKLDAAIQILESNIE 199
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78833.18520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E7KC48_9PLAN7.040e-27100.00Exonuclease n=5 Tax=Gimesia TaxID=1649453 RepID=A0... [more]
A0A518A3B8_9PLAN1.990e-2698.00Putative HTH-type transcriptional regulator YdfH n... [more]
A6CBF7_9PLAN2.530e-2490.00Exonuclease n=11 Tax=Planctomycetaceae TaxID=126 R... [more]
A0A518I9F6_9PLAN1.600e-2284.00Putative HTH-type transcriptional regulator YdfH n... [more]
A0A517WXB9_9PLAN5.580e-2076.00Putative HTH-type transcriptional regulator YdfH n... [more]
A0A381W019_9ZZZZ2.790e-1154.00HTH gntR-type domain-containing protein n=1 Tax=ma... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78833contigM-pyrifera_M_contig78833:827..979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score99.0
Seed ortholog evalue6.9e-19
Seed eggNOG ortholog344747.PM8797T_15681
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.helix_turn_helix gluconate operon transcriptional repressor
EggNOG OGs2IZPD@203682,COG1802@1,COG1802@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.2567186-CDS-M-pyrifera_M_contig78833:826..9791622816691.2567186-CDS-M-pyrifera_M_contig78833:826..979Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78833 827..979 -
1692278122.2734892-CDS-M-pyrifera_M_contig78833:826..9791692278122.2734892-CDS-M-pyrifera_M_contig78833:826..979Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78833 827..979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78833.18520.1prot_M-pyrifera_M_contig78833.18520.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78833 827..979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78833.18520.1

>prot_M-pyrifera_M_contig78833.18520.1 ID=prot_M-pyrifera_M_contig78833.18520.1|Name=mRNA_M-pyrifera_M_contig78833.18520.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
LVSRLRRHFLEGFQKPNDPMKVYYEHLAIVSMFRSGKLEPSIQALISNID
*
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mRNA from alignment at M-pyrifera_M_contig78833:827..979-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78833.18520.1 ID=mRNA_M-pyrifera_M_contig78833.18520.1|Name=mRNA_M-pyrifera_M_contig78833.18520.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig78833:827..979- (Macrocystis pyrifera P11B4 male)
CTCGTCTCCCGCTTGCGGAGACACTTTCTGGAAGGCTTTCAGAAGCCGAA
TGACCCCATGAAGGTCTATTACGAACACCTGGCGATTGTCTCCATGTTTC
GTTCCGGCAAACTGGAACCCTCCATCCAGGCGCTGATTTCAAATATCGAC
TGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78833:827..979-

>mRNA_M-pyrifera_M_contig78833.18520.1 ID=mRNA_M-pyrifera_M_contig78833.18520.1|Name=mRNA_M-pyrifera_M_contig78833.18520.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig78833:827..979- (Macrocystis pyrifera P11B4 male)
CTCGTCTCCCGCTTGCGGAGACACTTTCTGGAAGGCTTTCAGAAGCCGAA
TGACCCCATGAAGGTCTATTACGAACACCTGGCGATTGTCTCCATGTTTC
GTTCCGGCAAACTGGAACCCTCCATCCAGGCGCTGATTTCAAATATCGAC
TGACTCGTCTCCCGCTTGCGGAGACACTTTCTGGAAGGCTTTCAGAAGCC
GAATGACCCCATGAAGGTCTATTACGAACACCTGGCGATTGTCTCCATGT
TTCGTTCCGGCAAACTGGAACCCTCCATCCAGGCGCTGATTTCAAATATC
GACTGA
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