mRNA_M-pyrifera_M_contig78790.18515.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78790.18515.1
Unique NamemRNA_M-pyrifera_M_contig78790.18515.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78790.18515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78790contigM-pyrifera_M_contig78790:37..963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size927
Cds size927
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.0850608-CDS-M-pyrifera_M_contig78790:36..9631622816691.0850608-CDS-M-pyrifera_M_contig78790:36..963Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78790 37..963 +
1692278122.1825109-CDS-M-pyrifera_M_contig78790:36..9631692278122.1825109-CDS-M-pyrifera_M_contig78790:36..963Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78790 37..963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78790.18515.1prot_M-pyrifera_M_contig78790.18515.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78790 37..963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78790.18515.1

>prot_M-pyrifera_M_contig78790.18515.1 ID=prot_M-pyrifera_M_contig78790.18515.1|Name=mRNA_M-pyrifera_M_contig78790.18515.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=309bp
AVRQRFLARYLQAAAELAQGAPREAYVALDAAAAVLEEALSGRPDLQPEP
ARPSKHGGETAHDLFELRGLVELLAAHAALAEGAAAGDPVVLGHLRAAHE
NALLAQLRRLATDDQAGYESLDGLFDHELAPRRLVFSAPDNPTWSGPGRD
RGLDVLLAVGRAMAVVGGPELPGFEAPTAVAPGFGPARDDLRRANLLKLM
QPAELAAIQRRLNQSWDQNELQILELRRRLVTEDLQRALEEDFPNLDDLR
IPSMYALTMASDLNREDRAEEAVALAERLFADMDAAGELDDGANGSWLAA
RIELELGGA
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mRNA from alignment at M-pyrifera_M_contig78790:37..963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78790.18515.1 ID=mRNA_M-pyrifera_M_contig78790.18515.1|Name=mRNA_M-pyrifera_M_contig78790.18515.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=927bp|location=Sequence derived from alignment at M-pyrifera_M_contig78790:37..963+ (Macrocystis pyrifera P11B4 male)
GCCGTGCGCCAGCGCTTCCTCGCGCGCTACCTGCAGGCCGCGGCCGAGCT
GGCCCAGGGCGCGCCGCGCGAGGCGTACGTGGCGTTGGACGCGGCGGCGG
CGGTGTTGGAGGAAGCGCTCTCCGGCCGGCCTGACCTGCAGCCCGAACCG
GCGCGGCCGTCCAAGCACGGCGGCGAGACGGCCCACGACTTGTTCGAGCT
GCGCGGGTTGGTCGAGCTGTTGGCCGCGCACGCGGCGCTGGCCGAGGGTG
CGGCGGCGGGCGACCCGGTCGTGCTCGGGCACTTGCGCGCCGCGCACGAG
AACGCGCTGCTCGCGCAGTTGCGCCGGCTGGCGACCGACGACCAGGCCGG
CTACGAGTCGCTCGACGGGCTCTTCGACCATGAGCTCGCGCCGCGGCGGT
TGGTCTTCTCCGCGCCCGACAATCCGACCTGGTCGGGGCCGGGGCGGGAT
CGCGGGCTCGACGTGTTGCTGGCGGTGGGGCGCGCGATGGCGGTCGTCGG
CGGGCCCGAGCTGCCGGGCTTCGAAGCACCGACCGCCGTCGCGCCGGGCT
TCGGTCCCGCGCGCGACGACCTGCGGCGCGCGAACCTGCTCAAGCTGATG
CAGCCGGCGGAGCTGGCCGCGATCCAGCGGCGCCTGAACCAGTCGTGGGA
CCAGAACGAACTGCAGATCCTGGAGCTGCGGCGGCGGCTGGTGACCGAGG
ACCTGCAGCGCGCGCTCGAGGAGGACTTTCCGAACCTCGACGACTTGCGC
ATCCCATCGATGTACGCGCTGACGATGGCCAGCGATTTGAACCGCGAGGA
CCGCGCGGAGGAAGCGGTCGCGCTGGCCGAGCGCCTGTTCGCGGACATGG
ACGCGGCGGGCGAGCTGGACGACGGCGCGAACGGATCGTGGCTCGCGGCG
CGGATCGAGCTCGAGCTGGGCGGTGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78790:37..963+

>mRNA_M-pyrifera_M_contig78790.18515.1 ID=mRNA_M-pyrifera_M_contig78790.18515.1|Name=mRNA_M-pyrifera_M_contig78790.18515.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1854bp|location=Sequence derived from alignment at M-pyrifera_M_contig78790:37..963+ (Macrocystis pyrifera P11B4 male)
GCCGTGCGCCAGCGCTTCCTCGCGCGCTACCTGCAGGCCGCGGCCGAGCT
GGCCCAGGGCGCGCCGCGCGAGGCGTACGTGGCGTTGGACGCGGCGGCGG
CGGTGTTGGAGGAAGCGCTCTCCGGCCGGCCTGACCTGCAGCCCGAACCG
GCGCGGCCGTCCAAGCACGGCGGCGAGACGGCCCACGACTTGTTCGAGCT
GCGCGGGTTGGTCGAGCTGTTGGCCGCGCACGCGGCGCTGGCCGAGGGTG
CGGCGGCGGGCGACCCGGTCGTGCTCGGGCACTTGCGCGCCGCGCACGAG
AACGCGCTGCTCGCGCAGTTGCGCCGGCTGGCGACCGACGACCAGGCCGG
CTACGAGTCGCTCGACGGGCTCTTCGACCATGAGCTCGCGCCGCGGCGGT
TGGTCTTCTCCGCGCCCGACAATCCGACCTGGTCGGGGCCGGGGCGGGAT
CGCGGGCTCGACGTGTTGCTGGCGGTGGGGCGCGCGATGGCGGTCGTCGG
CGGGCCCGAGCTGCCGGGCTTCGAAGCACCGACCGCCGTCGCGCCGGGCT
TCGGTCCCGCGCGCGACGACCTGCGGCGCGCGAACCTGCTCAAGCTGATG
CAGCCGGCGGAGCTGGCCGCGATCCAGCGGCGCCTGAACCAGTCGTGGGA
CCAGAACGAACTGCAGATCCTGGAGCTGCGGCGGCGGCTGGTGACCGAGG
ACCTGCAGCGCGCGCTCGAGGAGGACTTTCCGAACCTCGACGACTTGCGC
ATCCCATCGATGTACGCGCTGACGATGGCCAGCGATTTGAACCGCGAGGA
CCGCGCGGAGGAAGCGGTCGCGCTGGCCGAGCGCCTGTTCGCGGACATGG
ACGCGGCGGGCGAGCTGGACGACGGCGCGAACGGATCGTGGCTCGCGGCG
CGGATCGAGCTCGAGCTGGGCGGTGCGGCCGTGCGCCAGCGCTTCCTCGC
GCGCTACCTGCAGGCCGCGGCCGAGCTGGCCCAGGGCGCGCCGCGCGAGG
CGTACGTGGCGTTGGACGCGGCGGCGGCGGTGTTGGAGGAAGCGCTCTCC
GGCCGGCCTGACCTGCAGCCCGAACCGGCGCGGCCGTCCAAGCACGGCGG
CGAGACGGCCCACGACTTGTTCGAGCTGCGCGGGTTGGTCGAGCTGTTGG
CCGCGCACGCGGCGCTGGCCGAGGGTGCGGCGGCGGGCGACCCGGTCGTG
CTCGGGCACTTGCGCGCCGCGCACGAGAACGCGCTGCTCGCGCAGTTGCG
CCGGCTGGCGACCGACGACCAGGCCGGCTACGAGTCGCTCGACGGGCTCT
TCGACCATGAGCTCGCGCCGCGGCGGTTGGTCTTCTCCGCGCCCGACAAT
CCGACCTGGTCGGGGCCGGGGCGGGATCGCGGGCTCGACGTGTTGCTGGC
GGTGGGGCGCGCGATGGCGGTCGTCGGCGGGCCCGAGCTGCCGGGCTTCG
AAGCACCGACCGCCGTCGCGCCGGGCTTCGGTCCCGCGCGCGACGACCTG
CGGCGCGCGAACCTGCTCAAGCTGATGCAGCCGGCGGAGCTGGCCGCGAT
CCAGCGGCGCCTGAACCAGTCGTGGGACCAGAACGAACTGCAGATCCTGG
AGCTGCGGCGGCGGCTGGTGACCGAGGACCTGCAGCGCGCGCTCGAGGAG
GACTTTCCGAACCTCGACGACTTGCGCATCCCATCGATGTACGCGCTGAC
GATGGCCAGCGATTTGAACCGCGAGGACCGCGCGGAGGAAGCGGTCGCGC
TGGCCGAGCGCCTGTTCGCGGACATGGACGCGGCGGGCGAGCTGGACGAC
GGCGCGAACGGATCGTGGCTCGCGGCGCGGATCGAGCTCGAGCTGGGCGG
TGCG
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